Wall clock time and date at job start Mon Mar 30 2020 06:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47076 * 2 1 4 4 C 1.52993 * 109.47532 * 304.56222 * 3 2 1 5 5 C 1.53004 * 109.47195 * 293.19254 * 4 3 2 6 6 C 1.53002 * 109.47010 * 64.56234 * 3 2 1 7 7 N 1.46900 * 109.47145 * 92.77067 * 6 3 2 8 8 C 1.46902 * 111.00237 * 274.90297 * 7 6 3 9 9 C 1.50702 * 109.46967 * 295.88395 * 8 7 6 10 10 H 1.07999 * 119.99779 * 83.85679 * 9 8 7 11 11 C 1.37872 * 120.00101 * 263.85673 * 9 8 7 12 12 N 1.31514 * 120.00046 * 170.44279 * 11 9 8 13 13 Si 1.86799 * 119.99985 * 350.44646 * 11 9 8 14 14 H 1.48499 * 109.47523 * 89.43353 * 13 11 9 15 15 H 1.48505 * 109.47149 * 209.43643 * 13 11 9 16 16 H 1.48507 * 109.47020 * 329.43554 * 13 11 9 17 17 C 1.46906 * 111.00165 * 150.95021 * 7 6 3 18 18 C 1.52998 * 109.47133 * 255.25510 * 17 7 6 19 19 C 1.53007 * 112.84927 * 43.28342 * 18 17 7 20 20 C 1.53781 * 113.61790 * 271.97537 * 18 17 7 21 21 C 1.53778 * 87.08117 * 220.01887 * 20 18 17 22 22 C 1.53775 * 87.08103 * 25.43156 * 21 20 18 23 23 H 1.08998 * 109.47331 * 65.73259 * 1 2 3 24 24 H 1.08994 * 109.47206 * 185.73245 * 1 2 3 25 25 H 1.09004 * 109.46780 * 305.73454 * 1 2 3 26 26 H 1.08997 * 109.46628 * 240.00170 * 2 1 3 27 27 H 1.09002 * 109.46867 * 120.00038 * 2 1 3 28 28 H 1.09004 * 109.47423 * 184.55698 * 3 2 1 29 29 H 1.09003 * 109.47457 * 53.18922 * 4 3 2 30 30 H 1.09005 * 109.47460 * 173.19520 * 4 3 2 31 31 H 1.08998 * 109.46980 * 65.39102 * 5 4 3 32 32 H 1.08993 * 109.47247 * 185.39374 * 5 4 3 33 33 H 1.09002 * 109.47133 * 305.39635 * 5 4 3 34 34 H 1.08995 * 109.47412 * 332.76689 * 6 3 2 35 35 H 1.09000 * 109.47299 * 212.76584 * 6 3 2 36 36 H 1.08997 * 109.47372 * 175.88068 * 8 7 6 37 37 H 1.09004 * 109.46827 * 55.88170 * 8 7 6 38 38 H 0.97000 * 119.99661 * 180.02562 * 12 11 9 39 39 H 1.09005 * 109.46815 * 15.25837 * 17 7 6 40 40 H 1.08995 * 109.47048 * 135.25367 * 17 7 6 41 41 H 1.08997 * 109.47155 * 40.48276 * 19 18 17 42 42 H 1.08997 * 109.46945 * 160.48401 * 19 18 17 43 43 H 1.08996 * 109.46834 * 280.48464 * 19 18 17 44 44 H 1.08994 * 113.61167 * 334.57123 * 20 18 17 45 45 H 1.08997 * 113.60931 * 105.46990 * 20 18 17 46 46 H 1.08996 * 113.61475 * 270.87890 * 21 20 18 47 47 H 1.09000 * 113.68531 * 139.99084 * 21 20 18 48 48 H 1.09002 * 113.61502 * 220.01597 * 22 21 20 49 49 H 1.09001 * 113.61373 * 89.11626 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4386 2.1961 -1.1878 5 6 1.9877 1.6142 -2.4920 6 6 1.6258 2.1298 1.3027 7 7 2.7012 1.9897 2.2936 8 6 2.5937 0.7117 3.0101 9 6 1.3133 0.6874 3.8045 10 1 0.3877 0.3998 3.3282 11 6 1.3236 1.0323 5.1394 12 7 0.1896 1.1941 5.7855 13 14 2.9482 1.2698 6.0302 14 1 3.3794 2.6852 5.9045 15 1 2.7800 0.9292 7.4658 16 1 3.9768 0.3836 5.4285 17 6 2.7035 3.1204 3.2315 18 6 3.8587 4.0637 2.8903 19 6 4.0001 4.3104 1.3869 20 6 5.1811 3.6939 3.5828 21 6 5.3993 5.2010 3.7968 22 6 3.8705 5.3521 3.7298 23 1 -0.3634 0.4224 -0.9368 24 1 -0.3633 -1.0225 0.1026 25 1 -0.3633 0.6002 0.8342 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.1270 1.4436 -0.0816 29 1 0.3536 2.0924 -1.1723 30 1 1.7038 3.2512 -1.1207 31 1 1.6422 0.5867 -2.6053 32 1 1.6350 2.2110 -3.3331 33 1 3.0773 1.6303 -2.4667 34 1 0.7166 1.6660 1.6851 35 1 1.4422 3.1873 1.1131 36 1 3.4423 0.6011 3.6851 37 1 2.5913 -0.1083 2.2920 38 1 0.1969 1.4371 6.7245 39 1 1.7591 3.6592 3.1533 40 1 2.8263 2.7485 4.2487 41 1 3.0111 4.4214 0.9424 42 1 4.5773 5.2199 1.2207 43 1 4.5125 3.4656 0.9267 44 1 5.0475 3.1361 4.5096 45 1 5.9112 3.2376 2.9144 46 1 5.9227 5.6876 2.9738 47 1 5.8202 5.4485 4.7713 48 1 3.5426 6.2344 3.1801 49 1 3.3786 5.2476 4.6968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432834840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:30 Heat of formation + Delta-G solvation = 5.723552 kcal Electronic energy + Delta-G solvation = -22840.268314 eV Core-core repulsion = 19995.479015 eV Total energy + Delta-G solvation = -2844.789299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.30663 -37.68906 -35.09637 -32.25106 -30.86282 -29.37846 -28.36664 -26.98530 -25.26931 -25.06273 -23.64784 -22.52972 -22.00681 -19.68255 -18.55836 -17.80496 -16.78127 -15.54410 -15.07742 -14.80374 -14.60895 -14.28683 -14.10461 -13.41466 -13.28421 -13.06125 -12.73514 -12.50192 -12.36565 -12.16706 -11.87402 -11.85041 -11.63985 -11.51289 -11.20979 -11.12892 -10.87052 -10.75159 -10.60649 -10.40838 -10.27160 -10.07734 -9.94151 -9.80240 -9.73737 -9.63954 -9.38012 -9.24468 -8.93777 -8.58108 -6.96615 -6.14962 -4.15344 3.19693 3.31975 3.32781 4.32617 4.81391 5.07908 5.11503 5.19192 5.20504 5.28880 5.29674 5.41926 5.62146 5.70422 5.75786 5.81471 5.86371 5.95545 5.99494 6.06838 6.14435 6.16901 6.19272 6.20203 6.22969 6.28562 6.30052 6.35505 6.41389 6.48636 6.53453 6.55993 6.62277 6.62989 6.69797 6.80163 6.81834 6.85221 6.96191 7.00499 7.11868 7.24018 7.41628 7.66643 8.27158 8.37980 8.54522 8.91839 9.50137 10.97572 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.014024 B = 0.008934 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.168893 B = 3133.192965 C = 4648.007692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.079 4.079 4 C -0.121 4.121 5 C -0.148 4.148 6 C 0.059 3.941 7 N -0.534 5.534 8 C 0.132 3.868 9 C -0.542 4.542 10 H 0.071 0.929 11 C 0.077 3.923 12 N -0.894 5.894 13 Si 0.870 3.130 14 H -0.265 1.265 15 H -0.295 1.295 16 H -0.262 1.262 17 C 0.071 3.929 18 C -0.072 4.072 19 C -0.106 4.106 20 C -0.129 4.129 21 C -0.142 4.142 22 C -0.137 4.137 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 4.936 -10.148 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.098 4.098 4 C -0.158 4.158 5 C -0.206 4.206 6 C -0.069 4.069 7 N -0.257 5.257 8 C 0.007 3.993 9 C -0.582 4.582 10 H 0.089 0.911 11 C -0.126 4.126 12 N -0.532 5.532 13 Si 0.699 3.301 14 H -0.191 1.191 15 H -0.222 1.222 16 H -0.187 1.187 17 C -0.058 4.058 18 C -0.073 4.073 19 C -0.163 4.163 20 C -0.166 4.166 21 C -0.180 4.180 22 C -0.175 4.175 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.797 4.955 -10.234 13.247 hybrid contribution -0.122 0.118 1.203 1.215 sum 6.676 5.073 -9.031 12.323 Atomic orbital electron populations 1.21871 0.96598 1.01066 1.01445 1.21683 0.95723 0.96994 1.01470 1.21192 1.00258 0.94365 0.93946 1.21659 1.00565 0.99154 0.94461 1.21774 1.00833 1.00728 0.97228 1.22236 0.95019 0.98167 0.91493 1.62650 1.44063 1.03246 1.15717 1.20505 0.96052 0.88469 0.94271 1.21589 0.95410 1.46132 0.95042 0.91090 1.25163 0.95748 0.94130 0.97573 1.69940 1.25760 1.47128 1.10350 0.87205 0.85324 0.79046 0.78513 1.19150 1.22230 1.18741 1.22077 0.94994 0.91714 0.96993 1.21867 0.95865 0.94626 0.94906 1.21375 1.01021 0.99928 0.93994 1.22983 0.97888 0.95233 1.00542 1.22799 0.96657 0.97681 1.00817 1.23024 0.96028 0.97948 1.00509 0.93517 0.93744 0.91676 0.93403 0.90782 0.90887 0.92015 0.92657 0.92880 0.93680 0.93035 0.92235 0.93453 0.94541 0.93772 0.92719 0.94274 0.91293 0.92930 0.94496 0.91871 0.90903 0.91841 0.90698 0.92392 0.92074 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.13 37.16 0.34 -2.04 16 2 C -0.12 -1.92 5.30 -26.73 -0.14 -2.06 16 3 C -0.08 -1.23 2.26 -90.63 -0.21 -1.44 16 4 C -0.12 -1.62 5.01 -26.73 -0.13 -1.75 16 5 C -0.15 -1.72 9.57 37.16 0.36 -1.37 16 6 C 0.06 1.11 3.89 -3.82 -0.01 1.09 16 7 N -0.53 -10.88 3.76 -236.06 -0.89 -11.77 16 8 C 0.13 3.06 5.36 -4.97 -0.03 3.03 16 9 C -0.54 -14.60 7.94 -34.44 -0.27 -14.88 16 10 H 0.07 2.10 7.58 -52.49 -0.40 1.70 16 11 C 0.08 2.15 5.04 -17.82 -0.09 2.06 16 12 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 13 Si 0.87 21.20 24.47 -169.99 -4.16 17.04 16 14 H -0.26 -6.16 5.69 56.52 0.32 -5.84 16 15 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.26 -6.24 6.27 56.52 0.35 -5.88 16 17 C 0.07 1.47 4.04 -3.82 -0.02 1.46 16 18 C -0.07 -1.24 1.21 -153.70 -0.19 -1.42 16 19 C -0.11 -1.61 8.16 37.16 0.30 -1.31 16 20 C -0.13 -2.16 7.22 -25.92 -0.19 -2.35 16 21 C -0.14 -2.03 7.74 -25.92 -0.20 -2.23 16 22 C -0.14 -2.16 7.15 -25.92 -0.19 -2.35 16 23 H 0.05 0.64 6.55 -51.93 -0.34 0.30 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 1.16 6.08 -51.93 -0.32 0.85 16 26 H 0.05 0.68 6.97 -51.93 -0.36 0.31 16 27 H 0.07 1.34 5.28 -51.93 -0.27 1.06 16 28 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 29 H 0.06 0.83 6.10 -51.93 -0.32 0.52 16 30 H 0.05 0.73 7.96 -51.93 -0.41 0.32 16 31 H 0.05 0.61 6.99 -51.93 -0.36 0.25 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 1.29 4.06 -51.93 -0.21 1.08 16 35 H 0.05 0.86 5.77 -51.93 -0.30 0.56 16 36 H 0.04 0.88 4.85 -51.93 -0.25 0.62 16 37 H 0.04 0.98 5.19 -51.93 -0.27 0.71 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.04 0.87 7.40 -51.93 -0.38 0.48 16 40 H 0.07 1.60 1.94 -51.93 -0.10 1.50 16 41 H 0.05 0.81 6.52 -51.93 -0.34 0.47 16 42 H 0.04 0.49 7.43 -51.93 -0.39 0.11 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 1.35 6.88 -51.93 -0.36 1.00 16 45 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 46 H 0.07 0.95 7.77 -51.93 -0.40 0.55 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 49 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -27.51 342.95 -8.61 -36.12 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.84 Total: 4.91 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -0.66 Total: -25.56 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.11 Total: -37.68 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.16 Total: 17.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.51 -8.61 -36.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432834840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.846 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds