Wall clock time and date at job start Mon Mar 30 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47066 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47701 * 55.00137 * 5 4 3 7 7 C 1.52997 * 109.47392 * 294.99910 * 5 4 3 8 8 C 1.53005 * 109.46935 * 175.00057 * 5 4 3 9 9 H 1.08997 * 109.47105 * 60.00059 * 8 5 4 10 10 C 1.53001 * 109.46808 * 299.99791 * 8 5 4 11 11 N 1.46905 * 109.47087 * 179.97438 * 8 5 4 12 12 C 1.46900 * 110.99656 * 204.99911 * 11 8 5 13 13 H 1.09006 * 110.01790 * 325.70025 * 12 11 8 14 14 C 1.53876 * 110.03494 * 87.09387 * 12 11 8 15 15 C 1.54268 * 106.59749 * 119.27992 * 14 12 11 16 16 C 1.54882 * 104.19567 * 23.61368 * 15 14 12 17 17 H 1.09001 * 110.75858 * 80.37320 * 16 15 14 18 18 C 1.50705 * 110.75336 * 203.55616 * 16 15 14 19 19 H 1.08002 * 119.99848 * 118.55119 * 18 16 15 20 20 C 1.37878 * 119.99908 * 298.54172 * 18 16 15 21 21 N 1.31518 * 120.00087 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99773 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46579 * 90.00711 * 22 20 18 24 24 H 1.48498 * 109.47065 * 210.00490 * 22 20 18 25 25 H 1.48498 * 109.47553 * 330.00887 * 22 20 18 26 26 C 1.54266 * 110.03058 * 204.30928 * 12 11 8 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.08996 * 109.46698 * 300.00222 * 4 3 2 35 35 H 1.09002 * 109.46838 * 59.99718 * 4 3 2 36 36 H 1.08998 * 109.47714 * 180.02562 * 7 5 4 37 37 H 1.09007 * 109.47199 * 300.00288 * 7 5 4 38 38 H 1.08995 * 109.47248 * 60.00475 * 7 5 4 39 39 H 1.09001 * 109.47239 * 60.00265 * 10 8 5 40 40 H 1.09008 * 109.46996 * 179.97438 * 10 8 5 41 41 H 1.08996 * 109.47226 * 299.99551 * 10 8 5 42 42 H 1.00900 * 110.99935 * 328.95067 * 11 8 5 43 43 H 1.08993 * 110.03044 * 238.56880 * 14 12 11 44 44 H 1.09007 * 110.02419 * 359.94814 * 14 12 11 45 45 H 1.09004 * 110.47940 * 142.29182 * 15 14 12 46 46 H 1.08998 * 110.48498 * 264.92879 * 15 14 12 47 47 H 0.97000 * 119.99739 * 179.97438 * 21 20 18 48 48 H 1.09001 * 110.48616 * 335.78508 * 26 12 11 49 49 H 1.09010 * 110.48620 * 98.42599 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4236 0.8423 7 6 3.6746 3.5698 -1.3067 8 6 5.6048 2.8868 0.1251 9 1 6.0391 2.3483 -0.7172 10 6 6.0101 2.2020 1.4319 11 7 6.0945 4.2719 0.1251 12 6 7.4848 4.3386 -0.3446 13 1 8.0296 3.4500 -0.0254 14 6 7.5181 4.4546 -1.8786 15 6 8.2212 5.7885 -2.2045 16 6 9.0812 6.0809 -0.9500 17 1 10.0068 5.5057 -0.9735 18 6 9.3736 7.5548 -0.8347 19 1 9.0277 8.1083 0.0258 20 6 10.0829 8.1967 -1.8277 21 7 10.5039 7.5228 -2.8757 22 14 10.4447 10.0237 -1.6851 23 1 11.7369 10.2188 -0.9797 24 1 10.5270 10.6195 -3.0428 25 1 9.3580 10.6854 -0.9193 26 6 8.1694 5.6053 0.2092 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9337 0.9286 0.8891 35 1 3.9330 0.9288 -0.8909 36 1 4.0383 4.5974 -1.3065 37 1 4.1089 3.0313 -2.1491 38 1 2.5883 3.5686 -1.3958 39 1 5.6468 1.1743 1.4314 40 1 7.0966 2.2029 1.5208 41 1 5.5759 2.7406 2.2742 42 1 5.4968 4.8667 -0.4289 43 1 8.0796 3.6228 -2.3038 44 1 6.5025 4.4605 -2.2746 45 1 8.8549 5.6804 -3.0848 46 1 7.4870 6.5795 -2.3566 47 1 11.0026 7.9744 -3.5744 48 1 7.4269 6.3670 0.4474 49 1 8.7650 5.3633 1.0895 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449444356.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:00 Heat of formation + Delta-G solvation = -50.284121 kcal Electronic energy + Delta-G solvation = -21089.339518 eV Core-core repulsion = 18242.121544 eV Total energy + Delta-G solvation = -2847.217974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.86307 -37.06094 -35.08683 -32.91081 -31.62767 -29.51235 -28.69379 -27.93601 -26.08296 -24.60164 -23.62373 -22.25338 -21.04662 -19.79416 -19.17125 -18.93166 -16.31555 -15.91131 -15.83628 -14.87538 -14.52956 -14.32843 -14.05670 -13.80762 -13.68141 -13.14911 -13.02049 -12.73619 -12.33996 -12.24763 -12.20871 -11.76615 -11.69207 -11.51129 -11.33420 -11.31073 -10.99218 -10.94734 -10.79810 -10.69730 -10.61379 -10.45864 -10.37193 -10.23917 -9.89471 -9.69702 -9.45348 -9.02021 -8.71025 -8.30961 -7.85570 -5.94386 -3.96696 3.34244 3.40761 3.44518 4.35985 4.49629 4.68707 4.72099 4.78618 4.91059 5.01878 5.10523 5.27334 5.37294 5.47245 5.50378 5.52096 5.57306 5.61367 5.66402 5.68645 5.75140 5.81148 5.85578 5.88013 5.90282 5.93028 5.98911 6.06870 6.10374 6.16728 6.31392 6.32610 6.41066 6.47782 6.60839 6.78202 6.82599 6.92401 7.13578 7.23793 7.41633 7.69035 7.78675 7.88872 7.99098 8.11610 8.54121 9.06164 9.66997 11.14831 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.041801 B = 0.003132 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.685184 B = 8938.027990 C = 9106.461451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.092 4.092 6 H 0.076 0.924 7 C -0.154 4.154 8 C 0.087 3.913 9 H 0.039 0.961 10 C -0.140 4.140 11 N -0.682 5.682 12 C 0.084 3.916 13 H 0.063 0.937 14 C -0.154 4.154 15 C -0.097 4.097 16 C 0.048 3.952 17 H 0.026 0.974 18 C -0.509 4.509 19 H 0.055 0.945 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.102 4.102 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.339 0.661 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.258 0.742 48 H 0.060 0.940 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.081 -13.836 4.426 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.153 4.153 5 C -0.111 4.111 6 H 0.094 0.906 7 C -0.211 4.211 8 C -0.023 4.023 9 H 0.057 0.943 10 C -0.197 4.197 11 N -0.315 5.315 12 C -0.025 4.025 13 H 0.082 0.918 14 C -0.193 4.193 15 C -0.135 4.135 16 C 0.029 3.971 17 H 0.044 0.956 18 C -0.547 4.547 19 H 0.073 0.927 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.200 1.200 26 C -0.140 4.140 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.161 0.839 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.819 -13.819 4.924 21.574 hybrid contribution 0.171 0.825 -1.085 1.374 sum -15.649 -12.993 3.839 20.699 Atomic orbital electron populations 1.21781 0.96115 1.01377 1.01761 1.21542 0.95645 0.97264 1.01859 1.21672 0.95659 0.96383 1.02104 1.21694 0.95083 0.96389 1.02128 1.21292 0.95194 0.96115 0.98477 0.90575 1.21957 1.01226 1.00746 0.97210 1.21493 0.93298 0.90570 0.96987 0.94290 1.21850 1.01346 0.98903 0.97650 1.60812 1.03599 1.07496 1.59546 1.22340 0.87982 0.99297 0.92923 0.91828 1.22975 0.99331 1.00571 0.96424 1.22233 0.97856 0.92120 1.01339 1.19591 0.92762 0.95543 0.89202 0.95583 1.21152 1.34226 0.93872 1.05471 0.92680 1.24986 0.95739 0.97858 0.95474 1.69969 1.37995 1.35659 1.09448 0.86654 0.78654 0.85878 0.77159 1.20785 1.21383 1.19950 1.22445 0.98199 0.94726 0.98651 0.92808 0.92992 0.92831 0.92178 0.92200 0.91863 0.92102 0.91518 0.92215 0.92274 0.92871 0.92413 0.92936 0.92901 0.92287 0.83940 0.93480 0.93838 0.91624 0.93681 0.93231 0.92084 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -0.99 4.97 -26.73 -0.13 -1.12 16 4 C -0.12 -1.06 4.47 -26.73 -0.12 -1.18 16 5 C -0.09 -0.99 2.11 -90.62 -0.19 -1.18 16 6 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.15 -1.66 8.71 37.16 0.32 -1.34 16 8 C 0.09 1.12 2.07 -67.71 -0.14 0.98 16 9 H 0.04 0.55 7.74 -51.93 -0.40 0.14 16 10 C -0.14 -1.70 9.05 37.16 0.34 -1.37 16 11 N -0.68 -10.65 6.01 -98.56 -0.59 -11.24 16 12 C 0.08 1.53 3.01 -66.59 -0.20 1.33 16 13 H 0.06 1.14 7.16 -51.93 -0.37 0.77 16 14 C -0.15 -2.94 6.30 -25.61 -0.16 -3.10 16 15 C -0.10 -2.29 5.57 -25.08 -0.14 -2.43 16 16 C 0.05 1.21 2.81 -89.74 -0.25 0.95 16 17 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.51 -14.21 8.55 -34.44 -0.29 -14.50 16 19 H 0.05 1.53 7.79 -52.49 -0.41 1.12 16 20 C 0.06 1.70 5.33 -17.82 -0.10 1.61 16 21 N -0.89 -25.97 12.01 55.43 0.67 -25.30 16 22 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.10 -2.18 5.96 -25.03 -0.15 -2.33 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.60 6.17 -51.93 -0.32 0.28 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.69 6.21 -51.93 -0.32 0.37 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 39 H 0.05 0.54 6.32 -51.93 -0.33 0.21 16 40 H 0.05 0.70 7.46 -51.92 -0.39 0.31 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.34 5.28 5.61 -39.29 -0.22 5.06 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.76 7.58 -51.92 -0.39 0.37 16 45 H 0.07 1.70 7.37 -51.93 -0.38 1.31 16 46 H 0.04 1.10 8.04 -51.93 -0.42 0.68 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.06 1.34 7.96 -51.93 -0.41 0.93 16 49 H 0.04 0.93 8.14 -51.92 -0.42 0.50 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -27.92 366.35 -10.11 -38.03 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -9.68 Total: 1.82 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -1.01 Total: -25.43 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.07 Total: -36.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.92 -10.11 -38.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444356.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.250 kcal (2) G-P(sol) polarization free energy of solvation -27.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds