Wall clock time and date at job start Mon Mar 30 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47066 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47701 * 55.00137 * 5 4 3 7 7 C 1.52997 * 109.47392 * 294.99910 * 5 4 3 8 8 C 1.53005 * 109.46935 * 175.00057 * 5 4 3 9 9 H 1.08997 * 109.47105 * 60.00059 * 8 5 4 10 10 C 1.53001 * 109.46808 * 299.99791 * 8 5 4 11 11 N 1.46905 * 109.47087 * 179.97438 * 8 5 4 12 12 C 1.46900 * 110.99656 * 204.99911 * 11 8 5 13 13 H 1.09006 * 110.01790 * 325.70025 * 12 11 8 14 14 C 1.53876 * 110.03494 * 87.09387 * 12 11 8 15 15 C 1.54268 * 106.59749 * 119.27992 * 14 12 11 16 16 C 1.54882 * 104.19567 * 23.61368 * 15 14 12 17 17 H 1.09001 * 110.75858 * 80.37320 * 16 15 14 18 18 C 1.50705 * 110.75336 * 203.55616 * 16 15 14 19 19 H 1.08002 * 119.99848 * 118.55119 * 18 16 15 20 20 C 1.37878 * 119.99908 * 298.54172 * 18 16 15 21 21 N 1.31518 * 120.00087 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99773 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46579 * 90.00711 * 22 20 18 24 24 H 1.48498 * 109.47065 * 210.00490 * 22 20 18 25 25 H 1.48498 * 109.47553 * 330.00887 * 22 20 18 26 26 C 1.54266 * 110.03058 * 204.30928 * 12 11 8 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.08996 * 109.46698 * 300.00222 * 4 3 2 35 35 H 1.09002 * 109.46838 * 59.99718 * 4 3 2 36 36 H 1.08998 * 109.47714 * 180.02562 * 7 5 4 37 37 H 1.09007 * 109.47199 * 300.00288 * 7 5 4 38 38 H 1.08995 * 109.47248 * 60.00475 * 7 5 4 39 39 H 1.09001 * 109.47239 * 60.00265 * 10 8 5 40 40 H 1.09008 * 109.46996 * 179.97438 * 10 8 5 41 41 H 1.08996 * 109.47226 * 299.99551 * 10 8 5 42 42 H 1.00900 * 110.99935 * 328.95067 * 11 8 5 43 43 H 1.08993 * 110.03044 * 238.56880 * 14 12 11 44 44 H 1.09007 * 110.02419 * 359.94814 * 14 12 11 45 45 H 1.09004 * 110.47940 * 142.29182 * 15 14 12 46 46 H 1.08998 * 110.48498 * 264.92879 * 15 14 12 47 47 H 0.97000 * 119.99739 * 179.97438 * 21 20 18 48 48 H 1.09001 * 110.48616 * 335.78508 * 26 12 11 49 49 H 1.09010 * 110.48620 * 98.42599 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4236 0.8423 7 6 3.6746 3.5698 -1.3067 8 6 5.6048 2.8868 0.1251 9 1 6.0391 2.3483 -0.7172 10 6 6.0101 2.2020 1.4319 11 7 6.0945 4.2719 0.1251 12 6 7.4848 4.3386 -0.3446 13 1 8.0296 3.4500 -0.0254 14 6 7.5181 4.4546 -1.8786 15 6 8.2212 5.7885 -2.2045 16 6 9.0812 6.0809 -0.9500 17 1 10.0068 5.5057 -0.9735 18 6 9.3736 7.5548 -0.8347 19 1 9.0277 8.1083 0.0258 20 6 10.0829 8.1967 -1.8277 21 7 10.5039 7.5228 -2.8757 22 14 10.4447 10.0237 -1.6851 23 1 11.7369 10.2188 -0.9797 24 1 10.5270 10.6195 -3.0428 25 1 9.3580 10.6854 -0.9193 26 6 8.1694 5.6053 0.2092 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9337 0.9286 0.8891 35 1 3.9330 0.9288 -0.8909 36 1 4.0383 4.5974 -1.3065 37 1 4.1089 3.0313 -2.1491 38 1 2.5883 3.5686 -1.3958 39 1 5.6468 1.1743 1.4314 40 1 7.0966 2.2029 1.5208 41 1 5.5759 2.7406 2.2742 42 1 5.4968 4.8667 -0.4289 43 1 8.0796 3.6228 -2.3038 44 1 6.5025 4.4605 -2.2746 45 1 8.8549 5.6804 -3.0848 46 1 7.4870 6.5795 -2.3566 47 1 11.0026 7.9744 -3.5744 48 1 7.4269 6.3670 0.4474 49 1 8.7650 5.3633 1.0895 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449444356.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:00 Heat of formation + Delta-G solvation = -63.506502 kcal Electronic energy + Delta-G solvation = -21089.912883 eV Core-core repulsion = 18242.121544 eV Total energy + Delta-G solvation = -2847.791339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09319 -38.35973 -36.09715 -34.58329 -32.99126 -30.70961 -29.73828 -29.51898 -27.73123 -25.54010 -25.32828 -23.16133 -21.74757 -21.21185 -20.78404 -20.34044 -18.37454 -17.16969 -16.60190 -16.50860 -16.01070 -15.70984 -15.06407 -14.90732 -14.69239 -14.25951 -14.10744 -14.01192 -13.76994 -13.46555 -13.14717 -13.11503 -13.01525 -12.84135 -12.66195 -12.45182 -12.33433 -12.17554 -12.07997 -11.92672 -11.82566 -11.58234 -11.51804 -11.38507 -11.29442 -11.19542 -11.06105 -10.80882 -10.78801 -10.45553 -9.17163 -8.10373 -6.20344 1.40880 1.41198 1.51924 2.43960 3.19425 3.27554 3.79833 3.95103 4.01485 4.04058 4.11007 4.21914 4.27042 4.33585 4.39164 4.56355 4.60790 4.67300 4.73835 4.80729 4.85366 4.85822 4.90976 4.98203 5.00172 5.04848 5.06907 5.09509 5.12286 5.15862 5.21484 5.21685 5.26587 5.29175 5.38284 5.42784 5.45075 5.46103 5.51278 5.60934 5.62671 5.66757 5.94025 6.01897 6.34474 6.42059 6.62855 6.90169 7.46923 8.97835 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.041801 B = 0.003132 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.685184 B = 8938.027990 C = 9106.461451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.110 4.110 5 C -0.084 4.084 6 H 0.074 0.926 7 C -0.153 4.153 8 C 0.085 3.915 9 H 0.034 0.966 10 C -0.137 4.137 11 N -0.682 5.682 12 C 0.098 3.902 13 H 0.071 0.929 14 C -0.141 4.141 15 C -0.089 4.089 16 C 0.038 3.962 17 H -0.004 1.004 18 C -0.530 4.530 19 H 0.051 0.949 20 C 0.010 3.990 21 N -0.920 5.920 22 Si 0.953 3.047 23 H -0.276 1.276 24 H -0.284 1.284 25 H -0.268 1.268 26 C -0.093 4.093 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.341 0.659 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.030 0.970 47 H 0.259 0.741 48 H 0.054 0.946 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.639 -14.529 5.053 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.148 4.148 5 C -0.103 4.103 6 H 0.092 0.908 7 C -0.211 4.211 8 C -0.024 4.024 9 H 0.052 0.948 10 C -0.195 4.195 11 N -0.315 5.315 12 C -0.012 4.012 13 H 0.089 0.911 14 C -0.180 4.180 15 C -0.127 4.127 16 C 0.019 3.981 17 H 0.014 0.986 18 C -0.568 4.568 19 H 0.069 0.931 20 C -0.188 4.188 21 N -0.560 5.560 22 Si 0.779 3.221 23 H -0.202 1.202 24 H -0.209 1.209 25 H -0.192 1.192 26 C -0.131 4.131 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.162 0.838 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.391 -14.521 5.564 23.329 hybrid contribution 0.663 1.027 -1.270 1.763 sum -16.728 -13.494 4.294 21.917 Atomic orbital electron populations 1.21783 0.95662 1.01809 1.01810 1.21533 0.96062 0.96695 1.01967 1.21634 0.94838 0.96937 1.02066 1.21646 0.95757 0.95049 1.02301 1.21223 0.93428 0.97299 0.98370 0.90792 1.21950 1.02152 0.99908 0.97047 1.21597 0.94786 0.88743 0.97280 0.94761 1.21837 1.00542 1.00105 0.96980 1.60749 1.02212 1.09371 1.59204 1.22060 0.89555 0.97757 0.91815 0.91099 1.22857 0.99890 0.97900 0.97352 1.22007 0.97051 0.94278 0.99387 1.19581 0.92538 0.94120 0.91850 0.98619 1.21511 1.34474 0.95377 1.05433 0.93065 1.25776 0.95591 1.02306 0.95143 1.70098 1.38500 1.37348 1.10040 0.85630 0.78651 0.80548 0.77285 1.20158 1.20923 1.19244 1.22282 0.97482 0.96034 0.97315 0.92702 0.92417 0.92858 0.91950 0.92229 0.91959 0.92079 0.91066 0.92291 0.93418 0.93160 0.91024 0.90779 0.94148 0.92487 0.83780 0.92803 0.91849 0.94549 0.95141 0.93196 0.92753 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.13 -1.58 5.93 30.59 0.18 -1.40 16 3 C -0.12 -1.65 4.97 30.59 0.15 -1.49 16 4 C -0.11 -1.74 4.47 30.59 0.14 -1.60 16 5 C -0.08 -1.64 2.11 -10.80 -0.02 -1.66 16 6 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 7 C -0.15 -3.00 8.71 71.98 0.63 -2.37 16 8 C 0.09 2.04 2.07 44.92 0.09 2.14 16 9 H 0.03 0.88 7.74 -2.39 -0.02 0.86 16 10 C -0.14 -3.04 9.05 71.98 0.65 -2.39 16 11 N -0.68 -20.29 6.01 -465.74 -2.80 -23.09 16 12 C 0.10 3.48 3.01 45.64 0.14 3.62 16 13 H 0.07 2.45 7.16 -2.38 -0.02 2.43 16 14 C -0.14 -5.27 6.30 31.32 0.20 -5.08 16 15 C -0.09 -4.29 5.57 31.67 0.18 -4.11 16 16 C 0.04 1.97 2.81 -10.22 -0.03 1.94 16 17 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 18 C -0.53 -30.17 8.55 25.60 0.22 -29.96 16 19 H 0.05 2.88 7.79 -2.91 -0.02 2.86 16 20 C 0.01 0.58 5.33 84.65 0.45 1.03 16 21 N -0.92 -54.77 12.01 21.45 0.26 -54.52 16 22 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 C -0.09 -3.98 5.96 31.69 0.19 -3.79 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.89 6.57 -2.39 -0.02 0.88 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.08 6.17 -2.39 -0.01 1.06 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 1.04 6.21 -2.39 -0.01 1.03 16 37 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.07 1.20 6.57 -2.39 -0.02 1.18 16 39 H 0.07 1.32 6.32 -2.39 -0.02 1.30 16 40 H 0.04 0.99 7.46 -2.38 -0.02 0.98 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.34 10.09 5.61 -89.69 -0.50 9.58 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 2.12 7.58 -2.38 -0.02 2.10 16 45 H 0.04 1.93 7.37 -2.38 -0.02 1.91 16 46 H 0.03 1.51 8.04 -2.39 -0.02 1.49 16 47 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 48 H 0.05 2.38 7.96 -2.39 -0.02 2.36 16 49 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -60.20 366.35 3.73 -56.47 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.37 Total: 20.59 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 3.87 Total: -46.18 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -2.54 Total: -77.61 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -60.20 3.73 -56.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444356.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.038 kcal (2) G-P(sol) polarization free energy of solvation -60.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds