Wall clock time and date at job start Mon Mar 30 2020 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47452 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46692 * 304.99992 * 5 4 3 7 7 C 1.53000 * 109.47167 * 64.99732 * 5 4 3 8 8 C 1.53002 * 109.47140 * 185.00013 * 5 4 3 9 9 H 1.08990 * 109.46906 * 299.99917 * 8 5 4 10 10 C 1.52995 * 109.47082 * 60.00274 * 8 5 4 11 11 N 1.46902 * 109.46794 * 179.97438 * 8 5 4 12 12 C 1.46898 * 110.99871 * 154.99787 * 11 8 5 13 13 H 1.09004 * 110.02014 * 325.70240 * 12 11 8 14 14 C 1.53878 * 110.03208 * 87.09328 * 12 11 8 15 15 C 1.54270 * 106.59785 * 119.28252 * 14 12 11 16 16 C 1.54889 * 104.19272 * 23.61642 * 15 14 12 17 17 H 1.08996 * 110.75640 * 80.37103 * 16 15 14 18 18 C 1.50705 * 110.75082 * 203.55753 * 16 15 14 19 19 H 1.07993 * 119.99790 * 118.54686 * 18 16 15 20 20 C 1.37874 * 119.99819 * 298.54410 * 18 16 15 21 21 N 1.31514 * 120.00028 * 180.02562 * 20 18 16 22 22 Si 1.86804 * 120.00095 * 0.02562 * 20 18 16 23 23 H 1.48491 * 109.47228 * 90.00204 * 22 20 18 24 24 H 1.48508 * 109.47045 * 210.00196 * 22 20 18 25 25 H 1.48501 * 109.47249 * 329.99811 * 22 20 18 26 26 C 1.54265 * 110.03700 * 204.30985 * 12 11 8 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.09002 * 109.47153 * 300.00216 * 4 3 2 35 35 H 1.09001 * 109.47289 * 60.00300 * 4 3 2 36 36 H 1.09001 * 109.47254 * 300.00345 * 7 5 4 37 37 H 1.09000 * 109.47102 * 60.00511 * 7 5 4 38 38 H 1.08996 * 109.47224 * 180.02562 * 7 5 4 39 39 H 1.09000 * 109.47597 * 59.99501 * 10 8 5 40 40 H 1.08993 * 109.47189 * 180.02562 * 10 8 5 41 41 H 1.09004 * 109.46836 * 299.99607 * 10 8 5 42 42 H 1.00898 * 111.00378 * 278.95388 * 11 8 5 43 43 H 1.09000 * 110.03630 * 238.57267 * 14 12 11 44 44 H 1.08999 * 110.03078 * 359.95231 * 14 12 11 45 45 H 1.08999 * 110.47960 * 142.28772 * 15 14 12 46 46 H 1.08991 * 110.48471 * 264.93467 * 15 14 12 47 47 H 0.97002 * 120.00290 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.48454 * 335.79214 * 26 12 11 49 49 H 1.09001 * 110.48531 * 98.42552 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6458 3.4242 -0.8406 7 6 3.6748 3.5686 1.3086 8 6 5.6050 2.8867 -0.1238 9 1 6.0392 2.3474 0.7180 10 6 6.0103 2.2031 -1.4312 11 7 6.0946 4.2717 -0.1238 12 6 7.4849 4.3386 0.3459 13 1 7.6570 3.5817 1.1113 14 6 8.4504 4.1250 -0.8331 15 6 9.3030 5.4061 -0.9421 16 6 9.2442 6.0233 0.4773 17 1 9.9487 5.5262 1.1441 18 6 9.5143 7.5051 0.4268 19 1 8.7592 8.2031 0.7568 20 6 10.7253 7.9695 -0.0407 21 7 10.9612 9.2626 -0.0844 22 14 12.0311 6.7621 -0.6122 23 1 11.8562 6.4934 -2.0621 24 1 13.3781 7.3407 -0.3749 25 1 11.8972 5.4924 0.1462 26 6 7.7842 5.7415 0.9134 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.9330 0.9287 0.8908 35 1 3.9338 0.9285 -0.8891 36 1 2.5884 3.5673 1.3978 37 1 4.1091 3.0294 2.1505 38 1 4.0378 4.5964 1.3089 39 1 5.5760 2.7423 -2.2730 40 1 7.0966 2.2040 -1.5201 41 1 5.6469 1.1754 -1.4316 42 1 6.0014 4.6883 -1.0380 43 1 9.0916 3.2651 -0.6396 44 1 7.8874 3.9709 -1.7536 45 1 10.3306 5.1588 -1.2083 46 1 8.8723 6.0898 -1.6736 47 1 11.8134 9.5894 -0.4129 48 1 7.1081 6.4797 0.4820 49 1 7.7037 5.7384 2.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449444357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:02 Heat of formation + Delta-G solvation = -44.185177 kcal Electronic energy + Delta-G solvation = -21120.089015 eV Core-core repulsion = 18273.135512 eV Total energy + Delta-G solvation = -2846.953504 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.94670 -37.26289 -35.18478 -32.98949 -31.84421 -29.51341 -28.75964 -28.21571 -26.47366 -24.57853 -23.47356 -22.33188 -21.07088 -20.19931 -19.49899 -18.93597 -16.67045 -15.86404 -15.57291 -15.13060 -14.72003 -14.35107 -14.08777 -13.93932 -13.57875 -13.17963 -12.99323 -12.83833 -12.64467 -12.49668 -12.30637 -12.26548 -11.69923 -11.49773 -11.47396 -11.34236 -11.23426 -11.04386 -10.87799 -10.74828 -10.54122 -10.46170 -10.36831 -10.12291 -9.96195 -9.71882 -9.65797 -9.30218 -8.93519 -8.49056 -7.98323 -6.01956 -3.99723 3.31181 3.40216 3.42493 4.28208 4.46356 4.67092 4.71796 4.80183 4.89425 5.04645 5.19290 5.21005 5.26704 5.36294 5.42539 5.44112 5.50238 5.54034 5.54492 5.60746 5.65865 5.68788 5.80706 5.83351 5.88958 5.89990 5.98500 6.03443 6.10042 6.12859 6.20905 6.23403 6.32628 6.41670 6.45313 6.52166 6.58231 6.62928 6.77424 6.90914 6.96182 7.23212 7.48645 7.67821 7.74385 7.84980 8.60471 9.03411 9.61766 11.11624 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.048392 B = 0.003248 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.472924 B = 8617.947225 C = 8980.530528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.078 4.078 6 H 0.066 0.934 7 C -0.138 4.138 8 C 0.088 3.912 9 H 0.072 0.928 10 C -0.189 4.189 11 N -0.675 5.675 12 C 0.085 3.915 13 H 0.066 0.934 14 C -0.151 4.151 15 C -0.128 4.128 16 C 0.011 3.989 17 H 0.028 0.972 18 C -0.505 4.505 19 H 0.074 0.926 20 C 0.068 3.932 21 N -0.904 5.904 22 Si 0.884 3.116 23 H -0.280 1.280 24 H -0.297 1.297 25 H -0.266 1.266 26 C -0.091 4.091 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.340 0.660 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.041 0.959 46 H 0.065 0.935 47 H 0.262 0.738 48 H 0.068 0.932 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.220 -18.361 -1.215 24.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.156 4.156 5 C -0.097 4.097 6 H 0.084 0.916 7 C -0.195 4.195 8 C -0.023 4.023 9 H 0.090 0.910 10 C -0.247 4.247 11 N -0.304 5.304 12 C -0.025 4.025 13 H 0.085 0.915 14 C -0.190 4.190 15 C -0.166 4.166 16 C -0.008 4.008 17 H 0.047 0.953 18 C -0.543 4.543 19 H 0.092 0.908 20 C -0.133 4.133 21 N -0.543 5.543 22 Si 0.713 3.287 23 H -0.207 1.207 24 H -0.224 1.224 25 H -0.191 1.191 26 C -0.129 4.129 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.159 0.841 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.364 -18.068 -0.632 24.385 hybrid contribution 1.391 -1.010 -1.296 2.153 sum -14.973 -19.078 -1.929 24.328 Atomic orbital electron populations 1.21782 0.96119 1.01355 1.01786 1.21544 0.95654 0.97336 1.01776 1.21658 0.95683 0.96267 1.02148 1.21734 0.95140 0.96886 1.01817 1.21096 0.94520 0.95125 0.98959 0.91577 1.21730 0.99557 1.02054 0.96151 1.21628 0.94726 0.89372 0.96558 0.90980 1.22714 1.01961 1.01191 0.98873 1.60709 1.21143 1.16209 1.32377 1.22369 0.85377 0.99218 0.95546 0.91524 1.22999 0.98971 0.99013 0.98065 1.22769 0.97259 0.95034 1.01575 1.20106 0.92786 0.96585 0.91329 0.95348 1.21029 1.01127 0.89845 1.42295 0.90840 1.25009 0.98075 0.94817 0.95355 1.69909 1.24215 1.12651 1.47547 0.86884 0.80829 0.81695 0.79269 1.20656 1.22395 1.19149 1.22268 0.98147 0.93676 0.98835 0.92831 0.92781 0.93018 0.92211 0.92297 0.92222 0.91718 0.92251 0.91966 0.93722 0.93599 0.91022 0.92711 0.92182 0.92397 0.84070 0.93155 0.92697 0.94021 0.91633 0.92814 0.91334 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.91 5.93 -26.74 -0.16 -1.07 16 3 C -0.12 -0.97 4.97 -26.74 -0.13 -1.10 16 4 C -0.12 -1.04 4.47 -26.73 -0.12 -1.15 16 5 C -0.08 -0.80 2.16 -90.62 -0.20 -1.00 16 6 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 7 C -0.14 -1.51 8.79 37.16 0.33 -1.18 16 8 C 0.09 1.02 2.17 -67.71 -0.15 0.87 16 9 H 0.07 0.89 7.44 -51.93 -0.39 0.50 16 10 C -0.19 -2.02 8.20 37.16 0.30 -1.72 16 11 N -0.67 -9.42 5.24 -98.57 -0.52 -9.94 16 12 C 0.08 1.38 3.22 -66.59 -0.21 1.16 16 13 H 0.07 1.06 7.45 -51.93 -0.39 0.67 16 14 C -0.15 -2.55 5.14 -25.61 -0.13 -2.68 16 15 C -0.13 -2.73 5.08 -25.07 -0.13 -2.86 16 16 C 0.01 0.26 2.29 -89.74 -0.21 0.06 16 17 H 0.03 0.69 7.37 -51.93 -0.38 0.31 16 18 C -0.51 -14.26 9.14 -34.44 -0.31 -14.57 16 19 H 0.07 2.25 8.03 -52.49 -0.42 1.83 16 20 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 21 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 22 Si 0.88 22.18 24.46 -169.99 -4.16 18.02 16 23 H -0.28 -6.87 7.10 56.52 0.40 -6.47 16 24 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 25 H -0.27 -6.42 6.48 56.52 0.37 -6.06 16 26 C -0.09 -1.81 5.96 -25.04 -0.15 -1.96 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.54 6.17 -51.93 -0.32 0.22 16 36 H 0.04 0.44 6.56 -51.93 -0.34 0.10 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.92 7.60 -51.93 -0.39 0.52 16 39 H 0.05 0.58 8.13 -51.93 -0.42 0.15 16 40 H 0.06 0.70 5.95 -51.93 -0.31 0.40 16 41 H 0.06 0.55 6.32 -51.93 -0.33 0.22 16 42 H 0.34 4.78 7.91 -39.29 -0.31 4.47 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.84 6.15 -51.93 -0.32 0.52 16 45 H 0.04 0.91 4.89 -51.93 -0.25 0.66 16 46 H 0.06 1.45 8.04 -51.93 -0.42 1.03 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 48 H 0.07 1.43 7.96 -51.93 -0.41 1.02 16 49 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -28.89 357.67 -9.07 -37.96 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -9.57 Total: 1.75 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -0.99 Total: -25.96 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.26 Total: -37.16 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.16 Total: 18.02 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.89 -9.07 -37.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.223 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds