Wall clock time and date at job start Mon Mar 30 2020 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47452 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46692 * 304.99992 * 5 4 3 7 7 C 1.53000 * 109.47167 * 64.99732 * 5 4 3 8 8 C 1.53002 * 109.47140 * 185.00013 * 5 4 3 9 9 H 1.08990 * 109.46906 * 299.99917 * 8 5 4 10 10 C 1.52995 * 109.47082 * 60.00274 * 8 5 4 11 11 N 1.46902 * 109.46794 * 179.97438 * 8 5 4 12 12 C 1.46898 * 110.99871 * 154.99787 * 11 8 5 13 13 H 1.09004 * 110.02014 * 325.70240 * 12 11 8 14 14 C 1.53878 * 110.03208 * 87.09328 * 12 11 8 15 15 C 1.54270 * 106.59785 * 119.28252 * 14 12 11 16 16 C 1.54889 * 104.19272 * 23.61642 * 15 14 12 17 17 H 1.08996 * 110.75640 * 80.37103 * 16 15 14 18 18 C 1.50705 * 110.75082 * 203.55753 * 16 15 14 19 19 H 1.07993 * 119.99790 * 118.54686 * 18 16 15 20 20 C 1.37874 * 119.99819 * 298.54410 * 18 16 15 21 21 N 1.31514 * 120.00028 * 180.02562 * 20 18 16 22 22 Si 1.86804 * 120.00095 * 0.02562 * 20 18 16 23 23 H 1.48491 * 109.47228 * 90.00204 * 22 20 18 24 24 H 1.48508 * 109.47045 * 210.00196 * 22 20 18 25 25 H 1.48501 * 109.47249 * 329.99811 * 22 20 18 26 26 C 1.54265 * 110.03700 * 204.30985 * 12 11 8 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.09002 * 109.47153 * 300.00216 * 4 3 2 35 35 H 1.09001 * 109.47289 * 60.00300 * 4 3 2 36 36 H 1.09001 * 109.47254 * 300.00345 * 7 5 4 37 37 H 1.09000 * 109.47102 * 60.00511 * 7 5 4 38 38 H 1.08996 * 109.47224 * 180.02562 * 7 5 4 39 39 H 1.09000 * 109.47597 * 59.99501 * 10 8 5 40 40 H 1.08993 * 109.47189 * 180.02562 * 10 8 5 41 41 H 1.09004 * 109.46836 * 299.99607 * 10 8 5 42 42 H 1.00898 * 111.00378 * 278.95388 * 11 8 5 43 43 H 1.09000 * 110.03630 * 238.57267 * 14 12 11 44 44 H 1.08999 * 110.03078 * 359.95231 * 14 12 11 45 45 H 1.08999 * 110.47960 * 142.28772 * 15 14 12 46 46 H 1.08991 * 110.48471 * 264.93467 * 15 14 12 47 47 H 0.97002 * 120.00290 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.48454 * 335.79214 * 26 12 11 49 49 H 1.09001 * 110.48531 * 98.42552 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6458 3.4242 -0.8406 7 6 3.6748 3.5686 1.3086 8 6 5.6050 2.8867 -0.1238 9 1 6.0392 2.3474 0.7180 10 6 6.0103 2.2031 -1.4312 11 7 6.0946 4.2717 -0.1238 12 6 7.4849 4.3386 0.3459 13 1 7.6570 3.5817 1.1113 14 6 8.4504 4.1250 -0.8331 15 6 9.3030 5.4061 -0.9421 16 6 9.2442 6.0233 0.4773 17 1 9.9487 5.5262 1.1441 18 6 9.5143 7.5051 0.4268 19 1 8.7592 8.2031 0.7568 20 6 10.7253 7.9695 -0.0407 21 7 10.9612 9.2626 -0.0844 22 14 12.0311 6.7621 -0.6122 23 1 11.8562 6.4934 -2.0621 24 1 13.3781 7.3407 -0.3749 25 1 11.8972 5.4924 0.1462 26 6 7.7842 5.7415 0.9134 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.9330 0.9287 0.8908 35 1 3.9338 0.9285 -0.8891 36 1 2.5884 3.5673 1.3978 37 1 4.1091 3.0294 2.1505 38 1 4.0378 4.5964 1.3089 39 1 5.5760 2.7423 -2.2730 40 1 7.0966 2.2040 -1.5201 41 1 5.6469 1.1754 -1.4316 42 1 6.0014 4.6883 -1.0380 43 1 9.0916 3.2651 -0.6396 44 1 7.8874 3.9709 -1.7536 45 1 10.3306 5.1588 -1.2083 46 1 8.8723 6.0898 -1.6736 47 1 11.8134 9.5894 -0.4129 48 1 7.1081 6.4797 0.4820 49 1 7.7037 5.7384 2.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449444357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:02 Heat of formation + Delta-G solvation = -59.954987 kcal Electronic energy + Delta-G solvation = -21120.772845 eV Core-core repulsion = 18273.135512 eV Total energy + Delta-G solvation = -2847.637334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12558 -38.40467 -36.15007 -34.61453 -33.29803 -30.64574 -30.04464 -29.33974 -27.94515 -25.45759 -25.12047 -23.19389 -21.73772 -21.36510 -21.16153 -20.23129 -18.73588 -16.99024 -16.67530 -16.39320 -15.88800 -15.73077 -15.13971 -14.87096 -14.77832 -14.42255 -14.16418 -14.05769 -13.88095 -13.83335 -13.51737 -13.18665 -12.87613 -12.73481 -12.60034 -12.42948 -12.20979 -12.14381 -11.95054 -11.91162 -11.66627 -11.54471 -11.48442 -11.46356 -11.33293 -11.21543 -11.12179 -11.01784 -10.80490 -10.68314 -9.11324 -8.28056 -6.30560 1.31201 1.35042 1.45865 2.34362 3.07371 3.26366 3.83668 3.95544 3.97867 4.05807 4.08647 4.19661 4.22889 4.38435 4.44177 4.47865 4.63217 4.69604 4.71989 4.74000 4.81705 4.86552 4.90883 4.94343 4.96847 4.99507 5.01170 5.05251 5.12115 5.15006 5.16298 5.18737 5.21489 5.24051 5.33863 5.38544 5.46398 5.46859 5.52630 5.53658 5.64379 5.67809 5.71867 5.82597 6.33766 6.38686 6.62896 6.76525 7.34564 8.89265 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.048392 B = 0.003248 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.472924 B = 8617.947225 C = 8980.530528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.111 4.111 5 C -0.072 4.072 6 H 0.063 0.937 7 C -0.134 4.134 8 C 0.089 3.911 9 H 0.070 0.930 10 C -0.184 4.184 11 N -0.679 5.679 12 C 0.099 3.901 13 H 0.080 0.920 14 C -0.139 4.139 15 C -0.128 4.128 16 C 0.004 3.996 17 H 0.027 0.973 18 C -0.511 4.511 19 H 0.029 0.971 20 C 0.008 3.992 21 N -0.954 5.954 22 Si 0.949 3.051 23 H -0.267 1.267 24 H -0.298 1.298 25 H -0.246 1.246 26 C -0.087 4.087 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.341 0.659 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.049 0.951 47 H 0.264 0.736 48 H 0.049 0.951 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.678 -21.788 -2.002 27.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.149 4.149 5 C -0.091 4.091 6 H 0.081 0.919 7 C -0.192 4.192 8 C -0.021 4.021 9 H 0.088 0.912 10 C -0.243 4.243 11 N -0.309 5.309 12 C -0.011 4.011 13 H 0.098 0.902 14 C -0.178 4.178 15 C -0.166 4.166 16 C -0.015 4.015 17 H 0.045 0.955 18 C -0.549 4.549 19 H 0.047 0.953 20 C -0.188 4.188 21 N -0.595 5.595 22 Si 0.775 3.225 23 H -0.193 1.193 24 H -0.225 1.225 25 H -0.170 1.170 26 C -0.125 4.125 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.160 0.840 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.851 -21.519 -1.416 27.368 hybrid contribution 1.428 0.160 -0.984 1.741 sum -15.423 -21.359 -2.400 26.454 Atomic orbital electron populations 1.21787 0.95763 1.01793 1.01770 1.21531 0.95992 0.96714 1.01958 1.21628 0.95187 0.96823 1.01892 1.21673 0.95524 0.95563 1.02153 1.21044 0.93641 0.96163 0.98300 0.91892 1.21686 1.00170 1.00716 0.96609 1.21672 0.95356 0.87820 0.97221 0.91172 1.22649 1.01542 1.02018 0.98052 1.60611 1.19573 1.18144 1.32562 1.22112 0.86663 0.96676 0.95669 0.90229 1.22940 0.98658 0.97029 0.99208 1.22633 0.98014 0.96830 0.99090 1.20081 0.94899 0.93262 0.93256 0.95536 1.21353 1.00095 0.92162 1.41296 0.95266 1.25908 1.00657 0.96585 0.95666 1.70068 1.25117 1.14991 1.49351 0.85826 0.77303 0.79841 0.79532 1.19296 1.22495 1.16986 1.22155 0.95601 0.95903 0.98880 0.92811 0.92867 0.92388 0.92126 0.92003 0.92367 0.92109 0.92174 0.91295 0.92750 0.93747 0.93206 0.92500 0.92770 0.90837 0.84003 0.91350 0.90652 0.94250 0.93245 0.92710 0.93179 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.53 5.93 30.59 0.18 -1.35 16 3 C -0.12 -1.64 4.97 30.59 0.15 -1.48 16 4 C -0.11 -1.65 4.47 30.60 0.14 -1.52 16 5 C -0.07 -1.33 2.16 -10.79 -0.02 -1.35 16 6 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 7 C -0.13 -2.76 8.79 71.98 0.63 -2.13 16 8 C 0.09 1.83 2.17 44.91 0.10 1.92 16 9 H 0.07 1.51 7.44 -2.39 -0.02 1.49 16 10 C -0.18 -3.30 8.20 71.98 0.59 -2.71 16 11 N -0.68 -17.67 5.24 -465.77 -2.44 -20.11 16 12 C 0.10 3.01 3.22 45.64 0.15 3.16 16 13 H 0.08 2.27 7.45 -2.38 -0.02 2.25 16 14 C -0.14 -4.26 5.14 31.32 0.16 -4.10 16 15 C -0.13 -5.22 5.08 31.67 0.16 -5.05 16 16 C 0.00 0.19 2.29 -10.22 -0.02 0.17 16 17 H 0.03 1.25 7.37 -2.39 -0.02 1.23 16 18 C -0.51 -29.84 9.14 25.60 0.23 -29.61 16 19 H 0.03 1.90 8.03 -2.91 -0.02 1.87 16 20 C 0.01 0.48 5.46 84.65 0.46 0.94 16 21 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 22 Si 0.95 45.68 24.46 68.60 1.68 47.36 16 23 H -0.27 -12.26 7.10 99.48 0.71 -11.56 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 25 H -0.25 -10.94 6.48 99.48 0.64 -10.30 16 26 C -0.09 -3.45 5.96 31.69 0.19 -3.26 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.89 6.56 -2.39 -0.02 0.88 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.95 6.17 -2.39 -0.01 0.94 16 36 H 0.05 0.99 6.56 -2.39 -0.02 0.98 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 1.24 7.60 -2.39 -0.02 1.22 16 39 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 40 H 0.05 1.05 5.95 -2.39 -0.01 1.04 16 41 H 0.07 1.11 6.32 -2.38 -0.02 1.09 16 42 H 0.34 8.93 7.91 -89.70 -0.71 8.22 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.03 6.15 -2.39 -0.01 2.01 16 45 H 0.04 1.61 4.89 -2.39 -0.01 1.60 16 46 H 0.05 2.15 8.04 -2.39 -0.02 2.13 16 47 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 48 H 0.05 2.14 7.96 -2.39 -0.02 2.12 16 49 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -63.97 357.67 3.46 -60.51 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.11 Total: 20.46 kcal Atomic # 6 Polarization: -51.22 SS G_CDS: 3.81 Total: -47.41 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -2.14 Total: -80.93 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.68 Total: 47.36 kcal Total: -63.97 3.46 -60.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.559 kcal (2) G-P(sol) polarization free energy of solvation -63.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds