Wall clock time and date at job start Mon Mar 30 2020 07:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47304 * 2 1 4 4 C 1.53000 * 109.46950 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47166 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46505 * 304.99766 * 5 4 3 7 7 C 1.52997 * 109.47127 * 64.99895 * 5 4 3 8 8 C 1.52992 * 109.47223 * 185.00400 * 5 4 3 9 9 H 1.08996 * 109.47747 * 59.99547 * 8 5 4 10 10 C 1.53002 * 109.47106 * 299.99874 * 8 5 4 11 11 N 1.46896 * 109.47500 * 179.97438 * 8 5 4 12 12 C 1.46900 * 111.00351 * 204.99784 * 11 8 5 13 13 H 1.08989 * 110.01580 * 325.05875 * 12 11 8 14 14 C 1.53872 * 110.03126 * 86.45430 * 12 11 8 15 15 C 1.54261 * 106.60355 * 119.28658 * 14 12 11 16 16 C 1.54886 * 104.19558 * 23.60538 * 15 14 12 17 17 H 1.08999 * 110.75605 * 80.37296 * 16 15 14 18 18 C 1.50702 * 110.75725 * 203.56271 * 16 15 14 19 19 H 1.08002 * 120.00153 * 118.54740 * 18 16 15 20 20 C 1.37876 * 119.99718 * 298.54530 * 18 16 15 21 21 N 1.31507 * 120.00451 * 0.02562 * 20 18 16 22 22 Si 1.86808 * 119.99665 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47274 * 59.99782 * 22 20 18 24 24 H 1.48498 * 109.46861 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46903 * 299.99705 * 22 20 18 26 26 C 1.54270 * 110.03151 * 203.61648 * 12 11 8 27 27 H 1.08997 * 109.46927 * 59.99799 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46693 * 299.99871 * 1 2 3 30 30 H 1.09007 * 109.46960 * 240.00158 * 2 1 3 31 31 H 1.08996 * 109.47370 * 120.00496 * 2 1 3 32 32 H 1.08998 * 109.47140 * 60.00403 * 3 2 1 33 33 H 1.08997 * 109.47293 * 299.99977 * 3 2 1 34 34 H 1.09007 * 109.47132 * 60.00269 * 4 3 2 35 35 H 1.08996 * 109.47552 * 300.00391 * 4 3 2 36 36 H 1.09002 * 109.47153 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.46832 * 60.00321 * 7 5 4 38 38 H 1.09004 * 109.47261 * 300.00303 * 7 5 4 39 39 H 1.09002 * 109.47596 * 60.00070 * 10 8 5 40 40 H 1.08996 * 109.47407 * 180.02562 * 10 8 5 41 41 H 1.09000 * 109.46986 * 300.00235 * 10 8 5 42 42 H 1.00900 * 111.00022 * 81.04266 * 11 8 5 43 43 H 1.09007 * 110.02921 * 238.57032 * 14 12 11 44 44 H 1.08998 * 110.03497 * 359.94766 * 14 12 11 45 45 H 1.09000 * 110.49161 * 142.28855 * 15 14 12 46 46 H 1.09011 * 110.48615 * 264.93260 * 15 14 12 47 47 H 0.96995 * 120.00539 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.48496 * 335.78487 * 26 12 11 49 49 H 1.09003 * 110.48276 * 98.42975 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0802 2.8849 0.0013 6 1 3.6459 3.4241 -0.8406 7 6 3.6749 3.5686 1.3086 8 6 5.6050 2.8867 -0.1239 9 1 5.8938 2.3996 -1.0552 10 6 6.2146 2.1296 1.0578 11 7 6.0947 4.2716 -0.1239 12 6 7.3903 4.3719 -0.8091 13 1 7.9800 3.4739 -0.6254 14 6 7.1738 4.5603 -2.3208 15 6 7.8140 5.9137 -2.6925 16 6 8.8662 6.1540 -1.5816 17 1 9.7759 5.5881 -1.7823 18 6 9.1726 7.6232 -1.4450 19 1 8.9707 8.1327 -0.5144 20 6 9.7108 8.3168 -2.5081 21 7 9.9563 7.6966 -3.6414 22 14 10.0914 10.1379 -2.3385 23 1 11.0752 10.3382 -1.2444 24 1 10.6580 10.6459 -3.6136 25 1 8.8427 10.8772 -2.0229 26 6 8.1544 5.6175 -0.3148 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9338 0.9284 -0.8892 35 1 3.9331 0.9286 0.8908 36 1 4.0379 4.5963 1.3089 37 1 4.1092 3.0292 2.1505 38 1 2.5885 3.5673 1.3978 39 1 5.8513 1.1020 1.0574 40 1 7.3009 2.1313 0.9689 41 1 5.9259 2.6167 1.9892 42 1 6.1537 4.6343 0.8158 43 1 7.6592 3.7540 -2.8708 44 1 6.1075 4.5764 -2.5462 45 1 8.2963 5.8525 -3.6681 46 1 7.0643 6.7051 -2.6854 47 1 10.3352 8.1845 -4.3892 48 1 7.4598 6.3610 0.0762 49 1 8.8853 5.3401 0.4448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449444358.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:04 Heat of formation + Delta-G solvation = -50.507677 kcal Electronic energy + Delta-G solvation = -21038.585172 eV Core-core repulsion = 18191.357504 eV Total energy + Delta-G solvation = -2847.227668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.81823 -37.05184 -35.14745 -32.95232 -31.65928 -29.11354 -28.29939 -28.01117 -26.05481 -25.14072 -23.62130 -22.60778 -21.11791 -19.45618 -18.91213 -18.55272 -16.39189 -15.88273 -15.41299 -15.24307 -14.61065 -14.35335 -14.24945 -13.96222 -13.39931 -13.31394 -13.09050 -12.59904 -12.33388 -12.21111 -12.03768 -12.03077 -11.65809 -11.46487 -11.29288 -11.22812 -10.95059 -10.76586 -10.73543 -10.60776 -10.59469 -10.41607 -10.26536 -10.22818 -9.88356 -9.76924 -9.36856 -9.03600 -8.69156 -8.28762 -7.91852 -5.93022 -3.95616 3.36455 3.40848 3.43554 4.37020 4.50403 4.72079 4.78886 4.85798 4.95044 5.09653 5.21797 5.25407 5.39106 5.44295 5.49132 5.49919 5.57464 5.60534 5.67009 5.69979 5.75857 5.81576 5.85763 5.92172 5.96283 5.99346 6.05968 6.11473 6.13808 6.17101 6.24712 6.41804 6.48714 6.55463 6.60683 6.75304 6.87458 6.99613 7.09489 7.29215 7.45219 7.70727 7.79469 7.88454 8.02507 8.12933 8.54056 9.06240 9.67764 11.16198 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.003106 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.846018 B = 9013.888302 C = 9083.842925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.078 4.078 6 H 0.075 0.925 7 C -0.147 4.147 8 C 0.087 3.913 9 H 0.073 0.927 10 C -0.184 4.184 11 N -0.675 5.675 12 C 0.084 3.916 13 H 0.031 0.969 14 C -0.116 4.116 15 C -0.096 4.096 16 C 0.053 3.947 17 H 0.026 0.974 18 C -0.511 4.511 19 H 0.053 0.947 20 C 0.062 3.938 21 N -0.891 5.891 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.118 4.118 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.335 0.665 43 H 0.041 0.959 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.259 0.741 48 H 0.063 0.937 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 -14.253 7.976 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.154 4.154 5 C -0.097 4.097 6 H 0.093 0.907 7 C -0.205 4.205 8 C -0.023 4.023 9 H 0.091 0.909 10 C -0.243 4.243 11 N -0.306 5.306 12 C -0.025 4.025 13 H 0.049 0.951 14 C -0.155 4.155 15 C -0.135 4.135 16 C 0.034 3.966 17 H 0.044 0.956 18 C -0.550 4.550 19 H 0.071 0.929 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.717 3.283 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.156 4.156 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.154 0.846 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.535 -14.034 7.228 21.458 hybrid contribution 0.860 0.536 0.665 1.212 sum -13.675 -13.498 7.892 20.772 Atomic orbital electron populations 1.21780 0.96144 1.01333 1.01777 1.21547 0.95629 0.97352 1.01781 1.21663 0.95723 0.96254 1.02150 1.21704 0.95070 0.96896 1.01738 1.21099 0.94719 0.95090 0.98792 0.90699 1.21883 1.00516 1.01157 0.96911 1.21561 0.94104 0.89171 0.97465 0.90888 1.22598 1.00924 1.01074 0.99712 1.60790 1.29153 1.18242 1.22403 1.22271 0.87576 0.97372 0.95295 0.95096 1.22290 1.00046 0.99414 0.93708 1.22229 0.97757 0.92536 1.00948 1.19501 0.93030 0.95266 0.88826 0.95636 1.21094 1.41381 0.94182 0.98307 0.92856 1.24968 0.95590 0.97947 0.95439 1.69949 1.44245 1.35925 1.02809 0.86721 0.78592 0.85879 0.77141 1.20406 1.21405 1.20324 1.22640 0.97928 0.95189 0.99873 0.92775 0.93034 0.92855 0.92200 0.92293 0.91850 0.92081 0.92264 0.92058 0.91910 0.93180 0.93176 0.92350 0.93013 0.92356 0.84650 0.94064 0.92525 0.91737 0.93511 0.93135 0.91816 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -1.03 4.97 -26.73 -0.13 -1.16 16 4 C -0.12 -1.09 4.18 -26.73 -0.11 -1.20 16 5 C -0.08 -0.87 2.41 -90.62 -0.22 -1.08 16 6 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 7 C -0.15 -1.54 8.33 37.16 0.31 -1.23 16 8 C 0.09 1.11 2.26 -67.72 -0.15 0.96 16 9 H 0.07 1.01 7.72 -51.93 -0.40 0.61 16 10 C -0.18 -2.08 8.44 37.16 0.31 -1.76 16 11 N -0.68 -10.32 5.42 -98.58 -0.53 -10.86 16 12 C 0.08 1.52 3.03 -66.59 -0.20 1.32 16 13 H 0.03 0.55 7.16 -51.94 -0.37 0.18 16 14 C -0.12 -2.30 6.38 -25.62 -0.16 -2.47 16 15 C -0.10 -2.33 5.57 -25.08 -0.14 -2.47 16 16 C 0.05 1.33 2.81 -89.78 -0.25 1.08 16 17 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 18 C -0.51 -14.29 8.55 -34.44 -0.29 -14.59 16 19 H 0.05 1.47 7.79 -52.49 -0.41 1.06 16 20 C 0.06 1.75 5.33 -17.82 -0.10 1.65 16 21 N -0.89 -26.02 12.01 55.43 0.67 -25.36 16 22 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C -0.12 -2.47 5.68 -25.07 -0.14 -2.61 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.56 6.71 -51.93 -0.35 0.21 16 36 H 0.06 0.73 7.21 -51.93 -0.37 0.35 16 37 H 0.05 0.49 6.43 -51.93 -0.33 0.16 16 38 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 39 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 40 H 0.05 0.63 7.45 -51.93 -0.39 0.25 16 41 H 0.06 0.62 6.42 -51.93 -0.33 0.29 16 42 H 0.34 4.90 7.35 -39.29 -0.29 4.61 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 45 H 0.06 1.69 7.37 -51.93 -0.38 1.30 16 46 H 0.05 1.18 8.04 -51.92 -0.42 0.77 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.06 1.35 7.88 -51.93 -0.41 0.94 16 49 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -27.94 365.08 -10.13 -38.07 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -9.67 Total: 1.41 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -1.07 Total: -25.40 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.13 Total: -36.22 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.94 -10.13 -38.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444358.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.436 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds