Wall clock time and date at job start Mon Mar 30 2020 07:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47304 * 2 1 4 4 C 1.53000 * 109.46950 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47166 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46505 * 304.99766 * 5 4 3 7 7 C 1.52997 * 109.47127 * 64.99895 * 5 4 3 8 8 C 1.52992 * 109.47223 * 185.00400 * 5 4 3 9 9 H 1.08996 * 109.47747 * 59.99547 * 8 5 4 10 10 C 1.53002 * 109.47106 * 299.99874 * 8 5 4 11 11 N 1.46896 * 109.47500 * 179.97438 * 8 5 4 12 12 C 1.46900 * 111.00351 * 204.99784 * 11 8 5 13 13 H 1.08989 * 110.01580 * 325.05875 * 12 11 8 14 14 C 1.53872 * 110.03126 * 86.45430 * 12 11 8 15 15 C 1.54261 * 106.60355 * 119.28658 * 14 12 11 16 16 C 1.54886 * 104.19558 * 23.60538 * 15 14 12 17 17 H 1.08999 * 110.75605 * 80.37296 * 16 15 14 18 18 C 1.50702 * 110.75725 * 203.56271 * 16 15 14 19 19 H 1.08002 * 120.00153 * 118.54740 * 18 16 15 20 20 C 1.37876 * 119.99718 * 298.54530 * 18 16 15 21 21 N 1.31507 * 120.00451 * 0.02562 * 20 18 16 22 22 Si 1.86808 * 119.99665 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47274 * 59.99782 * 22 20 18 24 24 H 1.48498 * 109.46861 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46903 * 299.99705 * 22 20 18 26 26 C 1.54270 * 110.03151 * 203.61648 * 12 11 8 27 27 H 1.08997 * 109.46927 * 59.99799 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46693 * 299.99871 * 1 2 3 30 30 H 1.09007 * 109.46960 * 240.00158 * 2 1 3 31 31 H 1.08996 * 109.47370 * 120.00496 * 2 1 3 32 32 H 1.08998 * 109.47140 * 60.00403 * 3 2 1 33 33 H 1.08997 * 109.47293 * 299.99977 * 3 2 1 34 34 H 1.09007 * 109.47132 * 60.00269 * 4 3 2 35 35 H 1.08996 * 109.47552 * 300.00391 * 4 3 2 36 36 H 1.09002 * 109.47153 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.46832 * 60.00321 * 7 5 4 38 38 H 1.09004 * 109.47261 * 300.00303 * 7 5 4 39 39 H 1.09002 * 109.47596 * 60.00070 * 10 8 5 40 40 H 1.08996 * 109.47407 * 180.02562 * 10 8 5 41 41 H 1.09000 * 109.46986 * 300.00235 * 10 8 5 42 42 H 1.00900 * 111.00022 * 81.04266 * 11 8 5 43 43 H 1.09007 * 110.02921 * 238.57032 * 14 12 11 44 44 H 1.08998 * 110.03497 * 359.94766 * 14 12 11 45 45 H 1.09000 * 110.49161 * 142.28855 * 15 14 12 46 46 H 1.09011 * 110.48615 * 264.93260 * 15 14 12 47 47 H 0.96995 * 120.00539 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.48496 * 335.78487 * 26 12 11 49 49 H 1.09003 * 110.48276 * 98.42975 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0802 2.8849 0.0013 6 1 3.6459 3.4241 -0.8406 7 6 3.6749 3.5686 1.3086 8 6 5.6050 2.8867 -0.1239 9 1 5.8938 2.3996 -1.0552 10 6 6.2146 2.1296 1.0578 11 7 6.0947 4.2716 -0.1239 12 6 7.3903 4.3719 -0.8091 13 1 7.9800 3.4739 -0.6254 14 6 7.1738 4.5603 -2.3208 15 6 7.8140 5.9137 -2.6925 16 6 8.8662 6.1540 -1.5816 17 1 9.7759 5.5881 -1.7823 18 6 9.1726 7.6232 -1.4450 19 1 8.9707 8.1327 -0.5144 20 6 9.7108 8.3168 -2.5081 21 7 9.9563 7.6966 -3.6414 22 14 10.0914 10.1379 -2.3385 23 1 11.0752 10.3382 -1.2444 24 1 10.6580 10.6459 -3.6136 25 1 8.8427 10.8772 -2.0229 26 6 8.1544 5.6175 -0.3148 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9338 0.9284 -0.8892 35 1 3.9331 0.9286 0.8908 36 1 4.0379 4.5963 1.3089 37 1 4.1092 3.0292 2.1505 38 1 2.5885 3.5673 1.3978 39 1 5.8513 1.1020 1.0574 40 1 7.3009 2.1313 0.9689 41 1 5.9259 2.6167 1.9892 42 1 6.1537 4.6343 0.8158 43 1 7.6592 3.7540 -2.8708 44 1 6.1075 4.5764 -2.5462 45 1 8.2963 5.8525 -3.6681 46 1 7.0643 6.7051 -2.6854 47 1 10.3352 8.1845 -4.3892 48 1 7.4598 6.3610 0.0762 49 1 8.8853 5.3401 0.4448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449444358.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:04 Heat of formation + Delta-G solvation = -63.724326 kcal Electronic energy + Delta-G solvation = -21039.158289 eV Core-core repulsion = 18191.357504 eV Total energy + Delta-G solvation = -2847.800785 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.01808 -38.39783 -36.15313 -34.60739 -33.07929 -30.28860 -29.82062 -29.08712 -27.67681 -25.96770 -25.52491 -23.50203 -21.82417 -21.19647 -20.47964 -19.68873 -18.39383 -16.85300 -16.69636 -16.56578 -16.33519 -15.64840 -15.19908 -15.01984 -14.62726 -14.24384 -14.10457 -13.98239 -13.75338 -13.53444 -13.10290 -13.02827 -12.91550 -12.88939 -12.69140 -12.40467 -12.21362 -12.12453 -11.96054 -11.91076 -11.76700 -11.62543 -11.42923 -11.32451 -11.26054 -11.21953 -11.10313 -10.79369 -10.77522 -10.43632 -9.16640 -8.09406 -6.19552 1.41386 1.43234 1.50616 2.44529 3.20626 3.28019 3.90419 3.97921 4.03205 4.12563 4.14530 4.18633 4.35268 4.38241 4.45382 4.49679 4.57392 4.67781 4.73589 4.78171 4.83597 4.89841 4.92245 4.99759 5.02006 5.07289 5.11652 5.16254 5.17727 5.19576 5.20761 5.25431 5.27085 5.33161 5.38109 5.43820 5.46689 5.49253 5.54838 5.65697 5.68317 5.70758 5.93974 6.03250 6.37520 6.41362 6.65581 6.90797 7.47499 8.98858 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.003106 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.846018 B = 9013.888302 C = 9083.842925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.110 4.110 5 C -0.072 4.072 6 H 0.057 0.943 7 C -0.144 4.144 8 C 0.087 3.913 9 H 0.062 0.938 10 C -0.178 4.178 11 N -0.679 5.679 12 C 0.098 3.902 13 H 0.041 0.959 14 C -0.106 4.106 15 C -0.088 4.088 16 C 0.042 3.958 17 H -0.004 1.004 18 C -0.532 4.532 19 H 0.052 0.948 20 C 0.010 3.990 21 N -0.920 5.920 22 Si 0.953 3.047 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.107 4.107 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.342 0.658 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.026 0.974 47 H 0.259 0.741 48 H 0.059 0.941 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.348 -15.041 9.505 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.148 4.148 5 C -0.092 4.092 6 H 0.075 0.925 7 C -0.201 4.201 8 C -0.023 4.023 9 H 0.080 0.920 10 C -0.237 4.237 11 N -0.310 5.310 12 C -0.011 4.011 13 H 0.059 0.941 14 C -0.144 4.144 15 C -0.127 4.127 16 C 0.023 3.977 17 H 0.015 0.985 18 C -0.570 4.570 19 H 0.071 0.929 20 C -0.189 4.189 21 N -0.560 5.560 22 Si 0.779 3.221 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.145 4.145 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.161 0.839 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.068 0.932 48 H 0.078 0.922 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.641 -14.831 8.775 23.272 hybrid contribution 1.196 0.768 0.173 1.432 sum -14.445 -14.062 8.948 22.056 Atomic orbital electron populations 1.21782 0.95691 1.01817 1.01782 1.21534 0.96049 0.96658 1.01963 1.21629 0.95075 0.96885 1.01918 1.21647 0.95595 0.95513 1.02030 1.21024 0.93346 0.96224 0.98565 0.92476 1.21848 1.01182 1.00329 0.96742 1.21621 0.95192 0.87670 0.97803 0.91955 1.22524 1.00130 1.01870 0.99138 1.60707 1.27192 1.20333 1.22770 1.21971 0.88813 0.96287 0.94050 0.94117 1.22172 1.00047 0.96892 0.95294 1.22015 0.96937 0.94490 0.99219 1.19498 0.92556 0.94037 0.91640 0.98546 1.21485 1.41465 0.95697 0.98345 0.92949 1.25782 0.95497 1.02436 0.95136 1.70086 1.44881 1.37561 1.03428 0.85686 0.78613 0.80498 0.77309 1.19521 1.21040 1.19682 1.22467 0.97927 0.96172 0.97971 0.93028 0.92347 0.92619 0.92348 0.91778 0.91581 0.92830 0.92546 0.91134 0.93248 0.92129 0.92278 0.90716 0.93992 0.91517 0.83909 0.93221 0.91760 0.94644 0.95511 0.93182 0.92191 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.66 5.93 30.59 0.18 -1.48 16 3 C -0.12 -1.79 4.97 30.59 0.15 -1.63 16 4 C -0.11 -1.82 4.18 30.60 0.13 -1.69 16 5 C -0.07 -1.48 2.41 -10.79 -0.03 -1.51 16 6 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 7 C -0.14 -2.69 8.33 71.98 0.60 -2.09 16 8 C 0.09 2.05 2.26 44.91 0.10 2.15 16 9 H 0.06 1.62 7.72 -2.39 -0.02 1.60 16 10 C -0.18 -3.54 8.44 71.98 0.61 -2.93 16 11 N -0.68 -19.73 5.42 -465.80 -2.52 -22.25 16 12 C 0.10 3.46 3.03 45.64 0.14 3.60 16 13 H 0.04 1.38 7.16 -2.39 -0.02 1.36 16 14 C -0.11 -4.17 6.38 31.32 0.20 -3.97 16 15 C -0.09 -4.38 5.57 31.67 0.18 -4.20 16 16 C 0.04 2.15 2.81 -10.25 -0.03 2.12 16 17 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 18 C -0.53 -30.23 8.55 25.60 0.22 -30.02 16 19 H 0.05 2.91 7.79 -2.91 -0.02 2.89 16 20 C 0.01 0.57 5.33 84.66 0.45 1.02 16 21 N -0.92 -55.10 12.01 21.45 0.26 -54.84 16 22 Si 0.95 44.74 29.54 68.60 2.03 46.76 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 26 C -0.11 -4.45 5.68 31.67 0.18 -4.27 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.97 6.56 -2.39 -0.02 0.96 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.07 1.06 6.71 -2.39 -0.02 1.04 16 36 H 0.05 1.06 7.21 -2.39 -0.02 1.04 16 37 H 0.06 1.01 6.43 -2.39 -0.02 0.99 16 38 H 0.06 1.00 6.56 -2.38 -0.02 0.98 16 39 H 0.07 1.25 6.54 -2.39 -0.02 1.24 16 40 H 0.04 0.92 7.45 -2.39 -0.02 0.91 16 41 H 0.07 1.22 6.42 -2.39 -0.02 1.21 16 42 H 0.34 9.35 7.35 -89.69 -0.66 8.69 16 43 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.06 2.43 7.92 -2.39 -0.02 2.41 16 45 H 0.03 1.92 7.37 -2.39 -0.02 1.90 16 46 H 0.03 1.38 8.04 -2.38 -0.02 1.37 16 47 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 48 H 0.06 2.51 7.88 -2.39 -0.02 2.50 16 49 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -60.48 365.08 3.77 -56.71 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.22 Total: 19.67 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 3.79 Total: -46.05 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -2.27 Total: -77.09 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -60.48 3.77 -56.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444358.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.019 kcal (2) G-P(sol) polarization free energy of solvation -60.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds