Wall clock time and date at job start Mon Mar 30 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47233 * 299.99657 * 3 2 1 7 7 C 1.53006 * 109.46977 * 300.00464 * 6 3 2 8 8 C 1.52996 * 109.47328 * 60.00126 * 3 2 1 9 9 N 1.46896 * 109.47496 * 59.99730 * 8 3 2 10 10 C 1.46895 * 111.00306 * 180.02562 * 9 8 3 11 11 H 1.09003 * 110.43081 * 325.69968 * 10 9 8 12 12 C 1.54268 * 110.48681 * 88.24093 * 10 9 8 13 13 C 1.54086 * 106.49082 * 142.19645 * 12 10 9 14 14 C 1.54263 * 106.62342 * 0.17558 * 13 12 10 15 15 H 1.09003 * 110.48671 * 94.95696 * 14 13 12 16 16 C 1.50706 * 110.59984 * 217.54184 * 14 13 12 17 17 H 1.07999 * 119.99931 * 114.83846 * 16 14 13 18 18 C 1.37875 * 119.99896 * 294.84503 * 16 14 13 19 19 N 1.31517 * 120.00371 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99701 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46804 * 90.00033 * 20 18 16 22 22 H 1.48496 * 109.46914 * 209.99572 * 20 18 16 23 23 H 1.48502 * 109.46966 * 329.99890 * 20 18 16 24 24 C 1.54884 * 104.19716 * 336.27773 * 14 13 12 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 31 31 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 32 32 H 1.08992 * 109.47098 * 299.99158 * 5 4 3 33 33 H 1.09001 * 109.47583 * 60.00267 * 5 4 3 34 34 H 1.09004 * 109.46724 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46986 * 60.00203 * 6 3 2 36 36 H 1.08993 * 109.47662 * 180.02562 * 6 3 2 37 37 H 1.09001 * 109.46801 * 59.99813 * 7 6 3 38 38 H 1.08998 * 109.46505 * 179.97438 * 7 6 3 39 39 H 1.09000 * 109.47050 * 299.99701 * 7 6 3 40 40 H 1.09004 * 109.47108 * 179.97438 * 8 3 2 41 41 H 1.09000 * 109.46870 * 299.99783 * 8 3 2 42 42 H 1.00900 * 111.00019 * 303.96160 * 9 8 3 43 43 H 1.08996 * 110.03075 * 261.57671 * 12 10 9 44 44 H 1.09001 * 110.03163 * 23.00980 * 12 10 9 45 45 H 1.09000 * 110.11368 * 240.83346 * 13 12 10 46 46 H 1.09003 * 109.92605 * 119.41766 * 13 12 10 47 47 H 0.97000 * 119.99770 * 180.02562 * 19 18 16 48 48 H 1.08997 * 110.75857 * 279.62538 * 24 14 13 49 49 H 1.08997 * 110.91600 * 156.32630 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 1.5300 2.1638 -1.2493 7 6 2.0401 1.4424 -2.4985 8 6 1.5300 2.1638 1.2492 9 7 2.0196 1.4713 2.4487 10 6 1.5481 2.1371 3.6702 11 1 1.4907 3.2150 3.5182 12 6 0.1744 1.5776 4.0943 13 6 0.1854 1.5114 5.6336 14 6 1.5627 2.0369 6.0882 15 1 1.5057 3.0987 6.3282 16 6 2.0629 1.2553 7.2757 17 1 2.9498 0.6456 7.1861 18 6 1.3881 1.3185 8.4764 19 7 0.3083 2.0612 8.5857 20 14 2.0078 0.3490 9.9481 21 1 2.9610 1.1825 10.7240 22 1 0.8602 -0.0254 10.8129 23 1 2.6948 -0.8804 9.4772 24 6 2.4806 1.8068 4.8621 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9337 0.9286 0.8892 31 1 3.9330 0.9287 -0.8908 32 1 3.7164 3.3992 -0.8895 33 1 3.7171 3.3983 0.8905 34 1 5.1700 2.8849 0.0000 35 1 0.4400 2.1638 -1.2493 36 1 1.8937 3.1912 -1.2496 37 1 1.6766 0.4147 -2.4984 38 1 1.6764 1.9560 -3.3885 39 1 3.1301 1.4424 -2.4985 40 1 1.8937 3.1913 1.2494 41 1 0.4400 2.1638 1.2492 42 1 1.7502 0.4990 2.4401 43 1 -0.6204 2.2405 3.7523 44 1 0.0334 0.5797 3.6791 45 1 0.0505 0.4819 5.9655 46 1 -0.6068 2.1414 6.0382 47 1 -0.1661 2.1059 9.4305 48 1 2.8123 0.7695 4.8171 49 1 3.3349 2.4834 4.8832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449444914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:23 Heat of formation + Delta-G solvation = -42.036345 kcal Electronic energy + Delta-G solvation = -21836.881290 eV Core-core repulsion = 18990.020966 eV Total energy + Delta-G solvation = -2846.860323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.51749 -37.33525 -33.74304 -32.23619 -31.91637 -30.62138 -28.04976 -27.71381 -25.93080 -24.97623 -23.57782 -22.34138 -21.88909 -19.60809 -18.98722 -17.84678 -16.34721 -15.82645 -15.61681 -15.30556 -14.78680 -14.54222 -13.81091 -13.76297 -13.14250 -12.97305 -12.74848 -12.66152 -12.48192 -12.29806 -12.16753 -11.90790 -11.64559 -11.49403 -11.39075 -11.28957 -11.02457 -10.92676 -10.68895 -10.53528 -10.42258 -10.25673 -10.15400 -10.07993 -9.94827 -9.75203 -9.48295 -9.02278 -8.67412 -8.32274 -7.81498 -5.95107 -3.97068 3.34067 3.40662 3.44177 4.43187 4.50881 4.75719 4.81844 4.87967 5.11508 5.21042 5.32294 5.36948 5.38526 5.50522 5.52601 5.58035 5.63190 5.65377 5.74491 5.76846 5.80037 5.86563 5.90406 5.94409 6.01345 6.03894 6.10329 6.15201 6.23451 6.30393 6.34448 6.36748 6.50992 6.54584 6.63345 6.75284 6.81498 6.92400 7.10768 7.23102 7.41109 7.63106 7.76842 7.84630 7.97288 8.09840 8.54749 9.06675 9.66664 11.14807 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.034122 B = 0.003849 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.375996 B = 7272.331311 C = 7533.309413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.053 4.053 4 C -0.105 4.105 5 C -0.151 4.151 6 C -0.117 4.117 7 C -0.153 4.153 8 C 0.065 3.935 9 N -0.679 5.679 10 C 0.081 3.919 11 H 0.068 0.932 12 C -0.151 4.151 13 C -0.094 4.094 14 C 0.047 3.953 15 H 0.028 0.972 16 C -0.510 4.510 17 H 0.055 0.945 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.098 4.098 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.336 0.664 43 H 0.041 0.959 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.258 0.742 48 H 0.057 0.943 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -0.988 -20.110 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.208 4.208 6 C -0.155 4.155 7 C -0.210 4.210 8 C -0.064 4.064 9 N -0.310 5.310 10 C -0.028 4.028 11 H 0.087 0.913 12 C -0.191 4.191 13 C -0.133 4.133 14 C 0.028 3.972 15 H 0.046 0.954 16 C -0.548 4.548 17 H 0.073 0.927 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.156 0.844 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.142 -0.613 -19.986 20.110 hybrid contribution -0.866 -0.746 0.916 1.464 sum 1.276 -1.358 -19.071 19.162 Atomic orbital electron populations 1.21900 0.96270 1.01305 1.01969 1.21623 0.95586 0.96296 1.02010 1.20601 0.95866 0.94859 0.94041 1.21459 0.93853 0.97179 1.01739 1.21825 1.00132 0.97251 1.01624 1.21623 1.00417 0.99399 0.94073 1.21855 1.01433 1.00587 0.97155 1.22059 0.96650 0.98086 0.89628 1.60708 1.63166 1.06050 1.01032 1.22535 0.93750 0.97157 0.89377 0.91335 1.22967 0.97135 0.98704 1.00249 1.22063 1.00714 1.00859 0.89623 1.19446 0.90022 0.96539 0.91213 0.95375 1.21181 1.10933 1.27679 0.95007 0.92675 1.24993 0.95026 0.95461 0.98588 1.69977 1.17960 1.39657 1.25434 0.86668 0.78315 0.80514 0.82934 1.20767 1.21390 1.19941 1.22508 0.97077 1.00221 0.93817 0.92491 0.92668 0.93140 0.91954 0.91557 0.90638 0.92950 0.93374 0.91996 0.93506 0.92098 0.91855 0.92580 0.93385 0.92405 0.91319 0.95532 0.84435 0.94001 0.93553 0.93226 0.93090 0.93217 0.92454 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.21 37.16 0.34 -1.23 16 2 C -0.12 -1.19 4.31 -26.73 -0.12 -1.30 16 3 C -0.05 -0.55 0.17 -154.51 -0.03 -0.58 16 4 C -0.10 -1.12 4.48 -26.73 -0.12 -1.24 16 5 C -0.15 -1.60 9.21 37.16 0.34 -1.26 16 6 C -0.12 -1.08 4.29 -26.73 -0.11 -1.20 16 7 C -0.15 -1.25 9.21 37.16 0.34 -0.91 16 8 C 0.07 0.82 3.79 -3.83 -0.01 0.80 16 9 N -0.68 -9.97 5.56 -104.98 -0.58 -10.55 16 10 C 0.08 1.44 3.17 -66.05 -0.21 1.23 16 11 H 0.07 1.23 7.85 -51.93 -0.41 0.82 16 12 C -0.15 -2.83 6.49 -25.50 -0.17 -2.99 16 13 C -0.09 -2.20 5.61 -25.50 -0.14 -2.35 16 14 C 0.05 1.17 2.72 -90.11 -0.24 0.93 16 15 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.51 -14.17 8.37 -34.44 -0.29 -14.46 16 17 H 0.06 1.52 7.77 -52.49 -0.41 1.11 16 18 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 19 N -0.89 -26.02 12.63 55.43 0.70 -25.32 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 24 C -0.10 -2.06 5.97 -24.74 -0.15 -2.20 16 25 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 26 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 29 H 0.07 0.73 6.57 -51.93 -0.34 0.39 16 30 H 0.07 0.94 7.61 -51.93 -0.39 0.54 16 31 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 32 H 0.05 0.46 6.43 -51.93 -0.33 0.13 16 33 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 36 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 37 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 40 H 0.07 0.90 6.36 -51.93 -0.33 0.57 16 41 H 0.03 0.35 6.43 -51.93 -0.33 0.01 16 42 H 0.34 4.90 6.15 -39.29 -0.24 4.66 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.81 7.55 -51.93 -0.39 0.42 16 45 H 0.05 1.24 7.83 -51.93 -0.41 0.83 16 46 H 0.05 1.28 8.06 -51.93 -0.42 0.86 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 49 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -27.59 353.04 -9.34 -36.93 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -9.10 Total: 2.22 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -0.66 Total: -25.15 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.12 Total: -35.88 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.59 -9.34 -36.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.108 kcal (2) G-P(sol) polarization free energy of solvation -27.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds