Wall clock time and date at job start Mon Mar 30 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47233 * 299.99657 * 3 2 1 7 7 C 1.53006 * 109.46977 * 300.00464 * 6 3 2 8 8 C 1.52996 * 109.47328 * 60.00126 * 3 2 1 9 9 N 1.46896 * 109.47496 * 59.99730 * 8 3 2 10 10 C 1.46895 * 111.00306 * 180.02562 * 9 8 3 11 11 H 1.09003 * 110.43081 * 325.69968 * 10 9 8 12 12 C 1.54268 * 110.48681 * 88.24093 * 10 9 8 13 13 C 1.54086 * 106.49082 * 142.19645 * 12 10 9 14 14 C 1.54263 * 106.62342 * 0.17558 * 13 12 10 15 15 H 1.09003 * 110.48671 * 94.95696 * 14 13 12 16 16 C 1.50706 * 110.59984 * 217.54184 * 14 13 12 17 17 H 1.07999 * 119.99931 * 114.83846 * 16 14 13 18 18 C 1.37875 * 119.99896 * 294.84503 * 16 14 13 19 19 N 1.31517 * 120.00371 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99701 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46804 * 90.00033 * 20 18 16 22 22 H 1.48496 * 109.46914 * 209.99572 * 20 18 16 23 23 H 1.48502 * 109.46966 * 329.99890 * 20 18 16 24 24 C 1.54884 * 104.19716 * 336.27773 * 14 13 12 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 31 31 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 32 32 H 1.08992 * 109.47098 * 299.99158 * 5 4 3 33 33 H 1.09001 * 109.47583 * 60.00267 * 5 4 3 34 34 H 1.09004 * 109.46724 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46986 * 60.00203 * 6 3 2 36 36 H 1.08993 * 109.47662 * 180.02562 * 6 3 2 37 37 H 1.09001 * 109.46801 * 59.99813 * 7 6 3 38 38 H 1.08998 * 109.46505 * 179.97438 * 7 6 3 39 39 H 1.09000 * 109.47050 * 299.99701 * 7 6 3 40 40 H 1.09004 * 109.47108 * 179.97438 * 8 3 2 41 41 H 1.09000 * 109.46870 * 299.99783 * 8 3 2 42 42 H 1.00900 * 111.00019 * 303.96160 * 9 8 3 43 43 H 1.08996 * 110.03075 * 261.57671 * 12 10 9 44 44 H 1.09001 * 110.03163 * 23.00980 * 12 10 9 45 45 H 1.09000 * 110.11368 * 240.83346 * 13 12 10 46 46 H 1.09003 * 109.92605 * 119.41766 * 13 12 10 47 47 H 0.97000 * 119.99770 * 180.02562 * 19 18 16 48 48 H 1.08997 * 110.75857 * 279.62538 * 24 14 13 49 49 H 1.08997 * 110.91600 * 156.32630 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 1.5300 2.1638 -1.2493 7 6 2.0401 1.4424 -2.4985 8 6 1.5300 2.1638 1.2492 9 7 2.0196 1.4713 2.4487 10 6 1.5481 2.1371 3.6702 11 1 1.4907 3.2150 3.5182 12 6 0.1744 1.5776 4.0943 13 6 0.1854 1.5114 5.6336 14 6 1.5627 2.0369 6.0882 15 1 1.5057 3.0987 6.3282 16 6 2.0629 1.2553 7.2757 17 1 2.9498 0.6456 7.1861 18 6 1.3881 1.3185 8.4764 19 7 0.3083 2.0612 8.5857 20 14 2.0078 0.3490 9.9481 21 1 2.9610 1.1825 10.7240 22 1 0.8602 -0.0254 10.8129 23 1 2.6948 -0.8804 9.4772 24 6 2.4806 1.8068 4.8621 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9337 0.9286 0.8892 31 1 3.9330 0.9287 -0.8908 32 1 3.7164 3.3992 -0.8895 33 1 3.7171 3.3983 0.8905 34 1 5.1700 2.8849 0.0000 35 1 0.4400 2.1638 -1.2493 36 1 1.8937 3.1912 -1.2496 37 1 1.6766 0.4147 -2.4984 38 1 1.6764 1.9560 -3.3885 39 1 3.1301 1.4424 -2.4985 40 1 1.8937 3.1913 1.2494 41 1 0.4400 2.1638 1.2492 42 1 1.7502 0.4990 2.4401 43 1 -0.6204 2.2405 3.7523 44 1 0.0334 0.5797 3.6791 45 1 0.0505 0.4819 5.9655 46 1 -0.6068 2.1414 6.0382 47 1 -0.1661 2.1059 9.4305 48 1 2.8123 0.7695 4.8171 49 1 3.3349 2.4834 4.8832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449444914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:22 Heat of formation + Delta-G solvation = -55.524158 kcal Electronic energy + Delta-G solvation = -21837.466165 eV Core-core repulsion = 18990.020966 eV Total energy + Delta-G solvation = -2847.445199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.49619 -38.88609 -35.36112 -33.68604 -33.04479 -31.47664 -29.83510 -29.04949 -27.28778 -25.95820 -25.33631 -23.31078 -22.70852 -21.14856 -20.92218 -18.73202 -18.33981 -16.89942 -16.65541 -16.54378 -16.40438 -15.88584 -15.32177 -15.08429 -14.25776 -14.00970 -13.92396 -13.79317 -13.64028 -13.43553 -13.41985 -13.21931 -12.97433 -12.74142 -12.61073 -12.44284 -12.33811 -12.27965 -12.15012 -12.05112 -11.79518 -11.56140 -11.36986 -11.34258 -11.13685 -10.94876 -10.89816 -10.75835 -10.74808 -10.47441 -9.08571 -8.11314 -6.20678 1.40788 1.41032 1.51733 2.43886 3.19161 3.33397 3.85977 3.96831 4.00299 4.05562 4.11654 4.28499 4.33774 4.44783 4.58367 4.63185 4.69752 4.70913 4.72222 4.81844 4.82530 4.85437 4.88035 4.98488 5.04639 5.05492 5.10805 5.11623 5.20002 5.23378 5.25313 5.26258 5.33864 5.38676 5.43609 5.45122 5.49583 5.53026 5.55442 5.65290 5.66253 5.83712 5.93414 6.00028 6.29599 6.43541 6.63262 6.91300 7.46705 8.97899 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.034122 B = 0.003849 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.375996 B = 7272.331311 C = 7533.309413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.046 4.046 4 C -0.102 4.102 5 C -0.149 4.149 6 C -0.115 4.115 7 C -0.150 4.150 8 C 0.067 3.933 9 N -0.674 5.674 10 C 0.097 3.903 11 H 0.070 0.930 12 C -0.138 4.138 13 C -0.085 4.085 14 C 0.037 3.963 15 H -0.004 1.004 16 C -0.529 4.529 17 H 0.052 0.948 18 C 0.009 3.991 19 N -0.922 5.922 20 Si 0.953 3.047 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.267 1.267 24 C -0.088 4.088 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.027 0.973 42 H 0.340 0.660 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.027 0.973 46 H 0.024 0.976 47 H 0.259 0.741 48 H 0.053 0.947 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -1.750 -22.006 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.047 4.047 4 C -0.140 4.140 5 C -0.206 4.206 6 C -0.152 4.152 7 C -0.207 4.207 8 C -0.062 4.062 9 N -0.305 5.305 10 C -0.013 4.013 11 H 0.088 0.912 12 C -0.177 4.177 13 C -0.124 4.124 14 C 0.018 3.982 15 H 0.014 0.986 16 C -0.568 4.568 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.562 5.562 20 Si 0.778 3.222 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.126 4.126 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.160 0.840 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.555 -1.380 -21.902 22.094 hybrid contribution -0.980 -0.482 1.496 1.852 sum 1.575 -1.862 -20.406 20.552 Atomic orbital electron populations 1.21873 0.96054 1.01558 1.01691 1.21609 0.95701 0.95937 1.02086 1.20541 0.95627 0.95004 0.93499 1.21428 0.93987 0.97112 1.01454 1.21795 1.00282 0.97125 1.01369 1.21597 1.00486 0.99345 0.93820 1.21831 1.01452 1.00656 0.96805 1.22114 0.96658 0.97991 0.89477 1.60614 1.63051 1.06195 1.00598 1.22234 0.92028 0.97408 0.89632 0.91185 1.22846 0.98334 1.00172 0.96378 1.21845 0.98819 0.98573 0.93137 1.19441 0.92060 0.94235 0.92463 0.98608 1.21556 1.10923 1.27900 0.96375 0.92938 1.25788 0.95197 0.96454 1.01450 1.70104 1.19033 1.40925 1.26104 0.85637 0.77859 0.79283 0.79391 1.20142 1.20995 1.19138 1.22324 0.96861 0.99909 0.93540 0.93897 0.91756 0.92681 0.90731 0.92638 0.92498 0.91637 0.92151 0.93663 0.93304 0.91977 0.91874 0.92323 0.92518 0.92331 0.91684 0.95499 0.84023 0.92598 0.91931 0.95388 0.95702 0.93208 0.92838 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.21 71.98 0.66 -2.08 16 2 C -0.12 -2.08 4.31 30.59 0.13 -1.94 16 3 C -0.05 -0.86 0.17 -52.18 -0.01 -0.87 16 4 C -0.10 -1.99 4.48 30.59 0.14 -1.85 16 5 C -0.15 -2.89 9.21 71.98 0.66 -2.23 16 6 C -0.11 -1.81 4.29 30.60 0.13 -1.68 16 7 C -0.15 -2.00 9.21 71.98 0.66 -1.34 16 8 C 0.07 1.55 3.79 86.30 0.33 1.88 16 9 N -0.67 -18.90 5.56 -486.04 -2.70 -21.60 16 10 C 0.10 3.38 3.17 45.99 0.15 3.52 16 11 H 0.07 2.44 7.85 -2.39 -0.02 2.43 16 12 C -0.14 -5.06 6.49 31.39 0.20 -4.86 16 13 C -0.08 -4.09 5.61 31.39 0.18 -3.91 16 14 C 0.04 1.91 2.72 -10.47 -0.03 1.88 16 15 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 16 C -0.53 -30.07 8.37 25.60 0.21 -29.86 16 17 H 0.05 2.93 7.77 -2.91 -0.02 2.91 16 18 C 0.01 0.54 5.35 84.65 0.45 0.99 16 19 N -0.92 -55.17 12.63 21.45 0.27 -54.90 16 20 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.09 -3.72 5.97 31.88 0.19 -3.52 16 25 H 0.04 0.88 6.43 -2.39 -0.02 0.86 16 26 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.18 6.43 -2.39 -0.02 1.16 16 29 H 0.05 1.13 6.57 -2.39 -0.02 1.11 16 30 H 0.06 1.33 7.61 -2.39 -0.02 1.31 16 31 H 0.07 1.11 6.43 -2.39 -0.02 1.10 16 32 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 33 H 0.04 1.03 6.43 -2.39 -0.02 1.01 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.98 6.43 -2.39 -0.02 0.97 16 36 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 37 H 0.06 0.76 6.43 -2.39 -0.02 0.74 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 0.78 6.43 -2.39 -0.02 0.76 16 40 H 0.06 1.60 6.36 -2.38 -0.02 1.58 16 41 H 0.03 0.65 6.43 -2.39 -0.02 0.63 16 42 H 0.34 9.36 6.15 -89.69 -0.55 8.80 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 2.10 7.55 -2.39 -0.02 2.08 16 45 H 0.03 1.42 7.83 -2.39 -0.02 1.40 16 46 H 0.02 1.28 8.06 -2.39 -0.02 1.26 16 47 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 48 H 0.05 2.28 8.05 -2.39 -0.02 2.26 16 49 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -59.97 353.04 4.00 -55.97 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.35 Total: 19.69 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 4.06 Total: -45.87 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -2.43 Total: -76.50 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -59.97 4.00 -55.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.442 kcal (2) G-P(sol) polarization free energy of solvation -59.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds