Wall clock time and date at job start Mon Mar 30 2020 07:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47256 * 2 1 4 4 C 1.53004 * 109.47170 * 120.00027 * 2 1 3 5 5 C 1.52996 * 109.46996 * 293.94728 * 4 2 1 6 6 N 1.46905 * 109.46919 * 63.39260 * 5 4 2 7 7 C 1.46899 * 111.00024 * 179.97438 * 6 5 4 8 8 H 1.09008 * 110.53800 * 323.83959 * 7 6 5 9 9 C 1.54266 * 110.48925 * 86.44631 * 7 6 5 10 10 C 1.53880 * 106.63912 * 142.26401 * 9 7 6 11 11 C 1.54375 * 106.54311 * 0.03968 * 10 9 7 12 12 H 1.09003 * 110.50634 * 95.04617 * 11 10 9 13 13 C 1.50697 * 110.57409 * 217.62476 * 11 10 9 14 14 H 1.08005 * 119.99686 * 114.83152 * 13 11 10 15 15 C 1.37876 * 120.00629 * 294.83144 * 13 11 10 16 16 N 1.31515 * 119.99593 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00467 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47324 * 89.99934 * 17 15 13 19 19 H 1.48500 * 109.47434 * 210.00320 * 17 15 13 20 20 H 1.48500 * 109.47053 * 329.99881 * 17 15 13 21 21 C 1.54885 * 104.20050 * 336.35390 * 11 10 9 22 22 C 1.53001 * 109.46805 * 173.95105 * 4 2 1 23 23 C 1.53007 * 109.46827 * 184.68517 * 22 4 2 24 24 C 1.52995 * 109.47304 * 304.68330 * 22 4 2 25 25 H 1.09001 * 109.47246 * 307.21510 * 1 2 3 26 26 H 1.08999 * 109.47311 * 67.21806 * 1 2 3 27 27 H 1.08999 * 109.46808 * 187.21741 * 1 2 3 28 28 H 1.08998 * 109.47112 * 240.00373 * 2 1 3 29 29 H 1.09000 * 109.47385 * 182.85089 * 3 2 1 30 30 H 1.09000 * 109.46845 * 302.85085 * 3 2 1 31 31 H 1.09004 * 109.46669 * 62.84878 * 3 2 1 32 32 H 1.08997 * 109.46979 * 53.95294 * 4 2 1 33 33 H 1.09002 * 109.47485 * 303.39272 * 5 4 2 34 34 H 1.09003 * 109.47399 * 183.38704 * 5 4 2 35 35 H 1.00890 * 111.00242 * 56.04389 * 6 5 4 36 36 H 1.08995 * 110.04020 * 261.57390 * 9 7 6 37 37 H 1.09002 * 110.03163 * 22.96355 * 9 7 6 38 38 H 1.08997 * 110.03292 * 119.31441 * 10 9 7 39 39 H 1.08997 * 110.03359 * 240.74326 * 10 9 7 40 40 H 0.97002 * 120.00267 * 180.02562 * 16 15 13 41 41 H 1.09000 * 110.75250 * 279.65373 * 21 11 10 42 42 H 1.09001 * 110.91644 * 156.35797 * 21 11 10 43 43 H 1.09002 * 109.47341 * 64.68769 * 22 4 2 44 44 H 1.09002 * 109.46954 * 60.00015 * 23 22 4 45 45 H 1.08995 * 109.47062 * 179.97438 * 23 22 4 46 46 H 1.08999 * 109.46926 * 299.99947 * 23 22 4 47 47 H 1.08999 * 109.46870 * 66.46360 * 24 22 4 48 48 H 1.08998 * 109.47481 * 186.46389 * 24 22 4 49 49 H 1.09007 * 109.47084 * 306.46286 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6580 0.0824 2.4938 6 7 0.1946 0.1411 2.6087 7 6 -0.2101 0.9063 3.7955 8 1 0.4823 0.7298 4.6188 9 6 -0.2858 2.4118 3.4674 10 6 -1.4952 2.9703 4.2376 11 6 -2.1118 1.7834 5.0084 12 1 -1.7267 1.7485 6.0276 13 6 -3.6155 1.8816 5.0174 14 1 -4.2085 1.1350 4.5100 15 6 -4.2345 2.9245 5.6734 16 7 -3.5124 3.8339 6.2909 17 14 -6.0984 3.0458 5.6851 18 1 -6.6347 2.3150 6.8613 19 1 -6.5012 4.4730 5.7633 20 1 -6.6414 2.4459 4.4399 21 6 -1.6547 0.5353 4.2132 22 6 3.5624 -0.8542 1.1755 23 6 4.0608 -1.6768 2.3655 24 6 3.9506 -1.5557 -0.1276 25 1 -0.3634 0.6215 0.8184 26 1 -0.3634 0.3979 -0.9475 27 1 -0.3633 -1.0195 0.1291 28 1 1.8933 -0.5138 -0.8900 29 1 3.1288 1.4430 -0.0511 30 1 1.6355 1.9709 -0.8633 31 1 1.7190 1.9414 0.9145 32 1 1.5910 -1.7129 1.3050 33 1 2.0566 1.0935 2.4100 34 1 2.0728 -0.3995 3.3791 35 1 -0.2044 -0.7855 2.6229 36 1 0.6268 2.9113 3.7923 37 1 -0.4277 2.5537 2.3960 38 1 -1.1694 3.7408 4.9364 39 1 -2.2243 3.3825 3.5401 40 1 -3.9478 4.5674 6.7527 41 1 -2.2838 0.3847 3.3358 42 1 -1.6581 -0.3521 4.8460 43 1 4.0155 0.1368 1.2036 44 1 3.6077 -2.6678 2.3374 45 1 5.1453 -1.7719 2.3128 46 1 3.7842 -1.1770 3.2939 47 1 3.6983 -0.9162 -0.9735 48 1 5.0225 -1.7533 -0.1285 49 1 3.4075 -2.4973 -0.2091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445850.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:57 Heat of formation + Delta-G solvation = -38.657372 kcal Electronic energy + Delta-G solvation = -21812.605200 eV Core-core repulsion = 18965.891400 eV Total energy + Delta-G solvation = -2846.713800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.22835 -37.26375 -34.11469 -33.23719 -31.85774 -28.45676 -28.03235 -27.18405 -26.91594 -25.84235 -23.58126 -22.54092 -20.92273 -19.59146 -18.84827 -18.47895 -16.26477 -16.01895 -15.18084 -15.08730 -14.59990 -14.51081 -14.16277 -13.65219 -13.30719 -12.80260 -12.76768 -12.60993 -12.33489 -12.28752 -12.10988 -11.93940 -11.59931 -11.43152 -11.37601 -11.03552 -10.97775 -10.82873 -10.75302 -10.50107 -10.38936 -10.25874 -10.23383 -9.99635 -9.88569 -9.72779 -9.45956 -9.02987 -8.66234 -8.31972 -7.76901 -5.95282 -3.97333 3.33932 3.40728 3.44192 4.39897 4.49994 4.69297 4.79796 4.97441 5.03982 5.29047 5.36682 5.40177 5.47696 5.53004 5.55809 5.60994 5.66555 5.71560 5.74279 5.80769 5.83674 5.93116 5.97280 6.03062 6.03843 6.08732 6.17908 6.27632 6.31850 6.36589 6.39364 6.47738 6.60196 6.63448 6.70694 6.85525 6.91819 7.05435 7.14101 7.25181 7.42131 7.62231 7.74217 7.81771 7.97810 8.09035 8.53326 9.05780 9.66272 11.14651 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035321 B = 0.003814 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.537729 B = 7339.892034 C = 7517.059681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 C -0.149 4.149 4 C -0.076 4.076 5 C 0.058 3.942 6 N -0.670 5.670 7 C 0.076 3.924 8 H 0.036 0.964 9 C -0.112 4.112 10 C -0.096 4.096 11 C 0.051 3.949 12 H 0.027 0.973 13 C -0.511 4.511 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.114 4.114 22 C -0.092 4.092 23 C -0.150 4.150 24 C -0.146 4.146 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.335 0.665 36 H 0.037 0.963 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.258 0.742 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.049 0.951 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.134 -8.675 -10.763 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.097 4.097 3 C -0.206 4.206 4 C -0.095 4.095 5 C -0.071 4.071 6 N -0.300 5.300 7 C -0.033 4.033 8 H 0.054 0.946 9 C -0.151 4.151 10 C -0.135 4.135 11 C 0.032 3.968 12 H 0.045 0.955 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.152 4.152 22 C -0.111 4.111 23 C -0.207 4.207 24 C -0.203 4.203 25 H 0.131 0.869 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.153 0.847 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.059 -7.963 -11.075 19.589 hybrid contribution -0.723 -0.485 0.765 1.159 sum 13.336 -8.448 -10.310 18.855 Atomic orbital electron populations 1.22296 0.94330 1.02473 1.02919 1.20987 0.96841 0.95559 0.96283 1.21936 0.99729 0.96729 1.02230 1.21284 0.94017 0.98830 0.95329 1.22175 0.89133 1.00251 0.95588 1.60927 1.08023 1.20237 1.40849 1.22533 0.96895 0.94767 0.89094 0.94633 1.22248 0.98631 0.93775 1.00398 1.22077 0.94109 0.99458 0.97848 1.19388 0.95057 0.88602 0.93734 0.95488 1.21165 0.91349 1.09387 1.33013 0.92733 1.24982 0.97806 0.95876 0.95362 1.69975 1.34864 1.13315 1.34771 0.86665 0.86316 0.77092 0.78344 1.20833 1.21345 1.19925 1.22720 0.93181 0.99454 0.99890 1.21131 0.95645 0.99432 0.94925 1.21912 1.00454 1.00018 0.98325 1.21873 1.00569 1.00460 0.97439 0.86890 0.94994 0.94194 0.92475 0.93635 0.93450 0.91516 0.91670 0.90731 0.95702 0.84748 0.94458 0.92182 0.93143 0.93106 0.93192 0.91690 0.94008 0.91109 0.92925 0.93084 0.92429 0.92351 0.93188 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.24 37.16 0.31 -1.74 16 2 C -0.08 -0.86 2.40 -90.62 -0.22 -1.08 16 3 C -0.15 -1.67 8.48 37.16 0.32 -1.35 16 4 C -0.08 -0.80 1.51 -90.62 -0.14 -0.93 16 5 C 0.06 0.71 4.36 -3.82 -0.02 0.69 16 6 N -0.67 -9.45 2.72 -104.97 -0.29 -9.73 16 7 C 0.08 1.32 3.17 -66.05 -0.21 1.11 16 8 H 0.04 0.63 7.88 -51.92 -0.41 0.22 16 9 C -0.11 -2.13 6.45 -25.61 -0.17 -2.29 16 10 C -0.10 -2.26 5.61 -25.55 -0.14 -2.40 16 11 C 0.05 1.27 2.72 -90.06 -0.24 1.03 16 12 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 13 C -0.51 -14.10 8.37 -34.44 -0.29 -14.39 16 14 H 0.05 1.49 7.77 -52.48 -0.41 1.08 16 15 C 0.06 1.71 5.35 -17.82 -0.10 1.62 16 16 N -0.89 -25.92 12.63 55.43 0.70 -25.22 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 C -0.11 -2.32 5.69 -24.74 -0.14 -2.46 16 22 C -0.09 -0.86 2.17 -90.62 -0.20 -1.05 16 23 C -0.15 -1.34 8.95 37.16 0.33 -1.00 16 24 C -0.15 -1.22 8.50 37.15 0.32 -0.91 16 25 H 0.11 1.65 5.51 -51.93 -0.29 1.36 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.06 0.60 6.15 -51.93 -0.32 0.28 16 29 H 0.04 0.46 6.84 -51.93 -0.36 0.10 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.84 6.09 -51.93 -0.32 0.53 16 32 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.07 0.98 6.05 -51.93 -0.31 0.66 16 34 H 0.02 0.31 6.34 -51.93 -0.33 -0.02 16 35 H 0.33 4.53 8.41 -39.30 -0.33 4.20 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 38 H 0.05 1.26 8.06 -51.93 -0.42 0.85 16 39 H 0.05 1.27 7.84 -51.93 -0.41 0.87 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.68 6.89 -51.93 -0.36 0.32 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.55 6.48 -51.93 -0.34 0.21 16 47 H 0.06 0.49 6.61 -51.93 -0.34 0.15 16 48 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -27.31 359.00 -9.33 -36.64 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -9.55 Total: 1.58 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -0.58 Total: -25.16 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.42 Total: -34.95 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.31 -9.33 -36.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445850.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.018 kcal (2) G-P(sol) polarization free energy of solvation -27.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds