Wall clock time and date at job start Mon Mar 30 2020 07:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47256 * 2 1 4 4 C 1.53004 * 109.47170 * 120.00027 * 2 1 3 5 5 C 1.52996 * 109.46996 * 293.94728 * 4 2 1 6 6 N 1.46905 * 109.46919 * 63.39260 * 5 4 2 7 7 C 1.46899 * 111.00024 * 179.97438 * 6 5 4 8 8 H 1.09008 * 110.53800 * 323.83959 * 7 6 5 9 9 C 1.54266 * 110.48925 * 86.44631 * 7 6 5 10 10 C 1.53880 * 106.63912 * 142.26401 * 9 7 6 11 11 C 1.54375 * 106.54311 * 0.03968 * 10 9 7 12 12 H 1.09003 * 110.50634 * 95.04617 * 11 10 9 13 13 C 1.50697 * 110.57409 * 217.62476 * 11 10 9 14 14 H 1.08005 * 119.99686 * 114.83152 * 13 11 10 15 15 C 1.37876 * 120.00629 * 294.83144 * 13 11 10 16 16 N 1.31515 * 119.99593 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00467 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47324 * 89.99934 * 17 15 13 19 19 H 1.48500 * 109.47434 * 210.00320 * 17 15 13 20 20 H 1.48500 * 109.47053 * 329.99881 * 17 15 13 21 21 C 1.54885 * 104.20050 * 336.35390 * 11 10 9 22 22 C 1.53001 * 109.46805 * 173.95105 * 4 2 1 23 23 C 1.53007 * 109.46827 * 184.68517 * 22 4 2 24 24 C 1.52995 * 109.47304 * 304.68330 * 22 4 2 25 25 H 1.09001 * 109.47246 * 307.21510 * 1 2 3 26 26 H 1.08999 * 109.47311 * 67.21806 * 1 2 3 27 27 H 1.08999 * 109.46808 * 187.21741 * 1 2 3 28 28 H 1.08998 * 109.47112 * 240.00373 * 2 1 3 29 29 H 1.09000 * 109.47385 * 182.85089 * 3 2 1 30 30 H 1.09000 * 109.46845 * 302.85085 * 3 2 1 31 31 H 1.09004 * 109.46669 * 62.84878 * 3 2 1 32 32 H 1.08997 * 109.46979 * 53.95294 * 4 2 1 33 33 H 1.09002 * 109.47485 * 303.39272 * 5 4 2 34 34 H 1.09003 * 109.47399 * 183.38704 * 5 4 2 35 35 H 1.00890 * 111.00242 * 56.04389 * 6 5 4 36 36 H 1.08995 * 110.04020 * 261.57390 * 9 7 6 37 37 H 1.09002 * 110.03163 * 22.96355 * 9 7 6 38 38 H 1.08997 * 110.03292 * 119.31441 * 10 9 7 39 39 H 1.08997 * 110.03359 * 240.74326 * 10 9 7 40 40 H 0.97002 * 120.00267 * 180.02562 * 16 15 13 41 41 H 1.09000 * 110.75250 * 279.65373 * 21 11 10 42 42 H 1.09001 * 110.91644 * 156.35797 * 21 11 10 43 43 H 1.09002 * 109.47341 * 64.68769 * 22 4 2 44 44 H 1.09002 * 109.46954 * 60.00015 * 23 22 4 45 45 H 1.08995 * 109.47062 * 179.97438 * 23 22 4 46 46 H 1.08999 * 109.46926 * 299.99947 * 23 22 4 47 47 H 1.08999 * 109.46870 * 66.46360 * 24 22 4 48 48 H 1.08998 * 109.47481 * 186.46389 * 24 22 4 49 49 H 1.09007 * 109.47084 * 306.46286 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6580 0.0824 2.4938 6 7 0.1946 0.1411 2.6087 7 6 -0.2101 0.9063 3.7955 8 1 0.4823 0.7298 4.6188 9 6 -0.2858 2.4118 3.4674 10 6 -1.4952 2.9703 4.2376 11 6 -2.1118 1.7834 5.0084 12 1 -1.7267 1.7485 6.0276 13 6 -3.6155 1.8816 5.0174 14 1 -4.2085 1.1350 4.5100 15 6 -4.2345 2.9245 5.6734 16 7 -3.5124 3.8339 6.2909 17 14 -6.0984 3.0458 5.6851 18 1 -6.6347 2.3150 6.8613 19 1 -6.5012 4.4730 5.7633 20 1 -6.6414 2.4459 4.4399 21 6 -1.6547 0.5353 4.2132 22 6 3.5624 -0.8542 1.1755 23 6 4.0608 -1.6768 2.3655 24 6 3.9506 -1.5557 -0.1276 25 1 -0.3634 0.6215 0.8184 26 1 -0.3634 0.3979 -0.9475 27 1 -0.3633 -1.0195 0.1291 28 1 1.8933 -0.5138 -0.8900 29 1 3.1288 1.4430 -0.0511 30 1 1.6355 1.9709 -0.8633 31 1 1.7190 1.9414 0.9145 32 1 1.5910 -1.7129 1.3050 33 1 2.0566 1.0935 2.4100 34 1 2.0728 -0.3995 3.3791 35 1 -0.2044 -0.7855 2.6229 36 1 0.6268 2.9113 3.7923 37 1 -0.4277 2.5537 2.3960 38 1 -1.1694 3.7408 4.9364 39 1 -2.2243 3.3825 3.5401 40 1 -3.9478 4.5674 6.7527 41 1 -2.2838 0.3847 3.3358 42 1 -1.6581 -0.3521 4.8460 43 1 4.0155 0.1368 1.2036 44 1 3.6077 -2.6678 2.3374 45 1 5.1453 -1.7719 2.3128 46 1 3.7842 -1.1770 3.2939 47 1 3.6983 -0.9162 -0.9735 48 1 5.0225 -1.7533 -0.1285 49 1 3.4075 -2.4973 -0.2091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449445850.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:57 Heat of formation + Delta-G solvation = -50.669937 kcal Electronic energy + Delta-G solvation = -21813.126104 eV Core-core repulsion = 18965.891400 eV Total energy + Delta-G solvation = -2847.234704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24442 -38.76270 -35.47489 -34.36780 -33.59050 -29.92275 -29.58655 -27.97540 -27.85473 -27.27384 -25.43646 -23.61821 -21.71156 -21.18364 -20.61810 -19.44662 -18.26785 -17.08277 -16.62642 -16.45454 -16.11093 -15.73723 -15.25413 -14.87020 -14.33353 -14.25753 -14.05047 -13.76174 -13.52464 -13.43909 -13.15923 -12.99743 -12.95792 -12.79671 -12.69007 -12.40330 -12.29303 -12.24932 -11.92406 -11.86052 -11.76226 -11.62123 -11.51609 -11.34012 -11.11042 -11.00388 -10.86564 -10.77675 -10.71312 -10.45802 -8.94131 -8.10488 -6.19610 1.41100 1.41928 1.52282 2.44579 3.20582 3.29992 3.88095 3.91588 4.05115 4.10701 4.17174 4.26197 4.39980 4.48350 4.59862 4.64584 4.69399 4.74829 4.79764 4.84074 4.86978 4.92926 5.02376 5.05085 5.07603 5.09008 5.11798 5.16548 5.20018 5.24281 5.27048 5.31373 5.34736 5.43423 5.47030 5.48274 5.54514 5.56439 5.60010 5.68866 5.75372 5.93509 6.01119 6.08758 6.32095 6.43555 6.62513 6.92297 7.47616 8.98882 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035321 B = 0.003814 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.537729 B = 7339.892034 C = 7517.059681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.075 4.075 3 C -0.147 4.147 4 C -0.068 4.068 5 C 0.060 3.940 6 N -0.664 5.664 7 C 0.093 3.907 8 H 0.037 0.963 9 C -0.100 4.100 10 C -0.087 4.087 11 C 0.040 3.960 12 H -0.005 1.005 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.009 3.991 16 N -0.922 5.922 17 Si 0.952 3.048 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.267 1.267 21 C -0.103 4.103 22 C -0.089 4.089 23 C -0.149 4.149 24 C -0.144 4.144 25 H 0.094 0.906 26 H 0.029 0.971 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.028 0.972 35 H 0.342 0.658 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.023 0.977 39 H 0.026 0.974 40 H 0.259 0.741 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.970 -10.032 -12.085 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.093 4.093 3 C -0.204 4.204 4 C -0.086 4.086 5 C -0.069 4.069 6 N -0.294 5.294 7 C -0.017 4.017 8 H 0.055 0.945 9 C -0.138 4.138 10 C -0.126 4.126 11 C 0.021 3.979 12 H 0.013 0.987 13 C -0.567 4.567 14 H 0.072 0.928 15 C -0.189 4.189 16 N -0.562 5.562 17 Si 0.778 3.222 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.191 1.191 21 C -0.141 4.141 22 C -0.108 4.108 23 C -0.206 4.206 24 C -0.201 4.201 25 H 0.112 0.888 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.161 0.839 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.901 -9.340 -12.408 21.523 hybrid contribution -0.971 -0.062 1.181 1.530 sum 13.930 -9.402 -11.227 20.211 Atomic orbital electron populations 1.22236 0.95499 1.02097 1.01972 1.20965 0.95714 0.95645 0.96976 1.21902 1.00523 0.96614 1.01331 1.21213 0.95081 0.98327 0.94020 1.22208 0.87566 1.00394 0.96723 1.60881 1.09509 1.20451 1.38595 1.22215 0.95140 0.93969 0.90347 0.94499 1.22096 0.96847 0.94904 0.99972 1.21872 0.95349 0.98379 0.96989 1.19394 0.93997 0.91589 0.92931 0.98673 1.21556 0.92971 1.09335 1.32847 0.92847 1.25783 1.02434 0.95604 0.95103 1.70105 1.36652 1.13847 1.35554 0.85642 0.80801 0.77104 0.78651 1.20132 1.21088 1.19143 1.22527 0.94878 0.97568 0.99106 1.21099 0.94400 0.99609 0.95711 1.21898 1.01105 0.99882 0.97706 1.21848 1.01199 1.00344 0.96705 0.88811 0.95201 0.93949 0.91370 0.92408 0.93586 0.93079 0.91512 0.91298 0.95400 0.83942 0.93172 0.91475 0.95790 0.95498 0.93229 0.91964 0.93115 0.91301 0.92751 0.92170 0.93210 0.92302 0.92307 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 8.24 71.98 0.59 -3.17 16 2 C -0.07 -1.47 2.40 -10.79 -0.03 -1.50 16 3 C -0.15 -3.00 8.48 71.98 0.61 -2.39 16 4 C -0.07 -1.26 1.51 -10.79 -0.02 -1.28 16 5 C 0.06 1.35 4.36 86.30 0.38 1.73 16 6 N -0.66 -17.62 2.72 -486.01 -1.32 -18.94 16 7 C 0.09 3.14 3.17 45.99 0.15 3.28 16 8 H 0.04 1.26 7.88 -2.38 -0.02 1.24 16 9 C -0.10 -3.75 6.45 31.32 0.20 -3.55 16 10 C -0.09 -4.22 5.61 31.36 0.18 -4.04 16 11 C 0.04 2.03 2.72 -10.43 -0.03 2.01 16 12 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 13 C -0.53 -29.76 8.37 25.60 0.21 -29.54 16 14 H 0.05 2.94 7.77 -2.91 -0.02 2.92 16 15 C 0.01 0.52 5.35 84.65 0.45 0.97 16 16 N -0.92 -55.09 12.63 21.45 0.27 -54.82 16 17 Si 0.95 44.55 29.54 68.60 2.03 46.57 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 C -0.10 -4.14 5.69 31.88 0.18 -3.96 16 22 C -0.09 -1.42 2.17 -10.79 -0.02 -1.44 16 23 C -0.15 -2.29 8.95 71.98 0.64 -1.64 16 24 C -0.14 -1.99 8.50 71.98 0.61 -1.37 16 25 H 0.09 2.60 5.51 -2.39 -0.01 2.59 16 26 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.04 0.95 8.12 -2.39 -0.02 0.93 16 28 H 0.07 1.24 6.15 -2.39 -0.01 1.22 16 29 H 0.06 1.03 6.84 -2.39 -0.02 1.01 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.21 6.09 -2.38 -0.01 1.20 16 32 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 33 H 0.07 1.67 6.05 -2.39 -0.01 1.66 16 34 H 0.03 0.63 6.34 -2.39 -0.02 0.62 16 35 H 0.34 8.55 8.41 -89.70 -0.75 7.79 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 2.44 8.04 -2.39 -0.02 2.42 16 38 H 0.02 1.24 8.06 -2.39 -0.02 1.22 16 39 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 40 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.06 2.53 8.05 -2.39 -0.02 2.51 16 42 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.07 1.15 6.89 -2.39 -0.02 1.13 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.84 6.48 -2.39 -0.02 0.83 16 47 H 0.06 0.81 6.61 -2.39 -0.02 0.80 16 48 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -59.34 359.00 5.22 -54.12 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.13 Total: 18.97 kcal Atomic # 6 Polarization: -50.01 SS G_CDS: 4.11 Total: -45.90 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -1.05 Total: -73.76 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -59.34 5.22 -54.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445850.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.446 kcal (2) G-P(sol) polarization free energy of solvation -59.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds