Wall clock time and date at job start Mon Mar 30 2020 07:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46720 * 2 1 4 4 H 1.08998 * 109.47237 * 55.00586 * 3 2 1 5 5 C 1.52995 * 109.47639 * 294.99907 * 3 2 1 6 6 C 1.53010 * 109.46717 * 175.00193 * 3 2 1 7 7 C 1.52994 * 109.47014 * 185.00238 * 6 3 2 8 8 H 1.08999 * 109.47032 * 304.99846 * 7 6 3 9 9 C 1.52999 * 109.47043 * 185.00079 * 7 6 3 10 10 C 1.52998 * 109.47304 * 174.14438 * 9 7 6 11 11 N 1.46898 * 109.47382 * 64.99986 * 7 6 3 12 12 C 1.46896 * 111.00118 * 224.21834 * 11 7 6 13 13 H 1.09000 * 110.81895 * 330.19233 * 12 11 7 14 14 C 1.54959 * 110.76821 * 93.49067 * 12 11 7 15 15 C 1.54269 * 104.16570 * 156.22388 * 14 12 11 16 16 C 1.53877 * 106.63691 * 336.44580 * 15 14 12 17 17 H 1.08992 * 110.03224 * 119.30825 * 16 15 14 18 18 C 1.50703 * 110.03123 * 240.69218 * 16 15 14 19 19 H 1.07998 * 120.00053 * 118.54608 * 18 16 15 20 20 C 1.37872 * 119.99761 * 298.54555 * 18 16 15 21 21 N 1.31520 * 119.99924 * 180.02562 * 20 18 16 22 22 Si 1.86804 * 120.00174 * 0.02562 * 20 18 16 23 23 H 1.48498 * 109.47039 * 89.99901 * 22 20 18 24 24 H 1.48497 * 109.47201 * 210.00163 * 22 20 18 25 25 H 1.48493 * 109.46946 * 330.00135 * 22 20 18 26 26 C 1.54274 * 106.59973 * 359.97409 * 16 15 14 27 27 H 1.09005 * 109.46952 * 299.99862 * 1 2 3 28 28 H 1.09002 * 109.47430 * 59.99534 * 1 2 3 29 29 H 1.08993 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46545 * 240.00096 * 2 1 3 31 31 H 1.09001 * 109.46924 * 120.00324 * 2 1 3 32 32 H 1.09004 * 109.46585 * 60.00281 * 5 3 2 33 33 H 1.09001 * 109.47225 * 180.02562 * 5 3 2 34 34 H 1.08998 * 109.47361 * 300.00603 * 5 3 2 35 35 H 1.08997 * 109.46740 * 64.99858 * 6 3 2 36 36 H 1.09006 * 109.46665 * 305.00388 * 6 3 2 37 37 H 1.09003 * 109.47071 * 294.14052 * 9 7 6 38 38 H 1.09000 * 109.47262 * 54.14159 * 9 7 6 39 39 H 1.09000 * 109.46910 * 300.82926 * 10 9 7 40 40 H 1.09003 * 109.47412 * 60.82818 * 10 9 7 41 41 H 1.08997 * 109.47129 * 180.83135 * 10 9 7 42 42 H 1.00900 * 111.00151 * 348.17489 * 11 7 6 43 43 H 1.08999 * 110.47660 * 37.56808 * 14 12 11 44 44 H 1.09005 * 110.52892 * 274.90266 * 14 12 11 45 45 H 1.08998 * 110.03476 * 217.13736 * 15 14 12 46 46 H 1.08997 * 110.03351 * 95.75259 * 15 14 12 47 47 H 0.97001 * 120.00227 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.48449 * 142.28472 * 26 16 15 49 49 H 1.08996 * 110.48741 * 264.79945 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4444 0.1257 7 6 4.0645 2.8850 0.2512 8 1 3.6971 3.4716 -0.5909 9 6 5.5944 2.8959 0.2514 10 6 6.0941 4.3419 0.2296 11 7 3.5704 3.4671 1.5061 12 6 3.0676 4.8306 1.2919 13 1 3.5989 5.3152 0.4727 14 6 1.5414 4.8177 1.0240 15 6 1.0755 6.2322 1.4265 16 6 2.1172 6.7727 2.4217 17 1 2.5778 7.6775 2.0254 18 6 1.4619 7.0652 3.7469 19 1 1.7803 6.5389 4.6346 20 6 0.4559 8.0046 3.8260 21 7 -0.1157 8.2602 4.9826 22 14 -0.0954 8.9144 2.2904 23 1 -1.1921 8.1583 1.6341 24 1 -0.5811 10.2670 2.6640 25 1 1.0489 9.0408 1.3525 26 6 3.1804 5.6676 2.5904 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5489 2.1253 -1.3968 33 1 1.9989 3.1542 -1.3074 34 1 2.0698 1.5877 -2.1491 35 1 4.0029 0.9836 -0.7597 36 1 3.8570 0.8799 1.0113 37 1 5.9612 2.3983 1.1492 38 1 5.9617 2.3713 -0.6306 39 1 5.7152 4.8438 -0.6607 40 1 5.7391 4.8625 1.1190 41 1 7.1839 4.3495 0.2149 42 1 2.8617 2.8815 1.9220 43 1 1.0522 4.0647 1.6418 44 1 1.3402 4.6358 -0.0318 45 1 0.0960 6.1815 1.9020 46 1 1.0305 6.8748 0.5472 47 1 -0.8232 8.9215 5.0383 48 1 4.1749 6.1051 2.6771 49 1 2.9573 5.0536 3.4629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:47 Heat of formation + Delta-G solvation = -44.212389 kcal Electronic energy + Delta-G solvation = -22042.932360 eV Core-core repulsion = 19195.977676 eV Total energy + Delta-G solvation = -2846.954684 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.10573 -37.06357 -35.19249 -32.58290 -31.32735 -30.57774 -28.49371 -27.95723 -26.44861 -24.98157 -23.08862 -22.63383 -20.61485 -19.95293 -19.69768 -18.82979 -16.54177 -15.90100 -15.42111 -15.15457 -14.79619 -14.41488 -14.23184 -13.59768 -13.42848 -13.41039 -12.84463 -12.77948 -12.45583 -12.29676 -12.13831 -11.99605 -11.94573 -11.67833 -11.42261 -11.21289 -11.10658 -10.83493 -10.71829 -10.67544 -10.62651 -10.40455 -10.22295 -10.17846 -10.10566 -9.80164 -9.63292 -9.30251 -8.85398 -8.49491 -7.91555 -6.01024 -3.98307 3.31550 3.40758 3.43298 4.44316 4.47263 4.53993 4.76766 4.78021 5.11872 5.21202 5.22294 5.28468 5.32113 5.40422 5.46027 5.48480 5.54475 5.55638 5.65766 5.68207 5.74949 5.78562 5.85457 5.88981 5.94683 6.02047 6.03905 6.10188 6.10655 6.15365 6.28060 6.32761 6.37930 6.40982 6.47280 6.53949 6.58954 6.66118 6.84060 6.90696 7.03123 7.32502 7.48558 7.68400 7.78232 7.88755 8.61578 9.04463 9.62631 11.12419 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.005410 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.309656 B = 5174.132386 C = 6070.921588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.098 4.098 4 H 0.074 0.926 5 C -0.150 4.150 6 C -0.124 4.124 7 C 0.083 3.917 8 H 0.054 0.946 9 C -0.108 4.108 10 C -0.150 4.150 11 N -0.675 5.675 12 C 0.081 3.919 13 H 0.073 0.927 14 C -0.142 4.142 15 C -0.130 4.130 16 C 0.008 3.992 17 H 0.026 0.974 18 C -0.504 4.504 19 H 0.073 0.927 20 C 0.067 3.933 21 N -0.905 5.905 22 Si 0.879 3.121 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.265 1.265 26 C -0.089 4.089 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.340 0.660 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.035 0.965 47 H 0.262 0.738 48 H 0.048 0.952 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.273 -14.763 -13.268 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.117 4.117 4 H 0.092 0.908 5 C -0.207 4.207 6 C -0.162 4.162 7 C -0.027 4.027 8 H 0.072 0.928 9 C -0.146 4.146 10 C -0.207 4.207 11 N -0.306 5.306 12 C -0.029 4.029 13 H 0.091 0.909 14 C -0.181 4.181 15 C -0.168 4.168 16 C -0.011 4.011 17 H 0.044 0.956 18 C -0.542 4.542 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.544 5.544 22 Si 0.707 3.293 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.190 1.190 26 C -0.127 4.127 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.160 0.840 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.765 -14.454 -12.970 20.565 hybrid contribution -1.397 0.429 -1.254 1.926 sum 5.368 -14.025 -14.224 20.685 Atomic orbital electron populations 1.21833 0.95978 1.01284 1.02152 1.21545 0.95868 0.96350 1.01644 1.21247 0.95486 0.96120 0.98803 0.90792 1.21958 1.01266 1.00673 0.96835 1.21982 0.94943 0.97115 1.02180 1.21677 0.95019 0.93867 0.92109 0.92775 1.21525 0.94976 0.97184 1.00950 1.21752 0.99741 0.96978 1.02250 1.60626 1.42202 1.03427 1.24387 1.22809 0.92696 0.88540 0.98837 0.90864 1.22997 0.97069 0.98887 0.99108 1.22597 1.01513 0.94328 0.98358 1.19753 0.92283 0.93863 0.95247 0.95610 1.21148 1.17902 1.21705 0.93444 0.90918 1.25022 0.96238 0.96437 0.95622 1.69916 1.25974 1.34245 1.24273 0.86929 0.79345 0.78832 0.84155 1.20521 1.22176 1.18957 1.22253 0.98217 0.96439 0.95770 0.92538 0.92591 0.93101 0.92361 0.92084 0.92614 0.92330 0.93090 0.91742 0.91350 0.91692 0.93016 0.93759 0.91191 0.93681 0.84004 0.92085 0.93467 0.91586 0.94604 0.92858 0.93353 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.67 37.16 0.36 -1.05 16 2 C -0.12 -1.05 5.40 -26.73 -0.14 -1.19 16 3 C -0.10 -0.98 2.29 -90.62 -0.21 -1.19 16 4 H 0.07 0.85 6.03 -51.93 -0.31 0.54 16 5 C -0.15 -1.52 8.68 37.16 0.32 -1.20 16 6 C -0.12 -1.23 4.11 -26.73 -0.11 -1.34 16 7 C 0.08 0.97 1.98 -67.72 -0.13 0.83 16 8 H 0.05 0.67 5.62 -51.93 -0.29 0.38 16 9 C -0.11 -1.21 5.60 -26.73 -0.15 -1.36 16 10 C -0.15 -1.80 8.98 37.16 0.33 -1.47 16 11 N -0.68 -9.35 5.89 -97.63 -0.57 -9.93 16 12 C 0.08 1.32 2.19 -65.68 -0.14 1.17 16 13 H 0.07 1.18 6.78 -51.93 -0.35 0.83 16 14 C -0.14 -2.42 6.19 -25.03 -0.15 -2.57 16 15 C -0.13 -2.76 4.47 -25.61 -0.11 -2.87 16 16 C 0.01 0.18 2.40 -90.65 -0.22 -0.03 16 17 H 0.03 0.63 7.22 -51.93 -0.37 0.25 16 18 C -0.50 -14.21 8.92 -34.44 -0.31 -14.51 16 19 H 0.07 2.23 7.80 -52.49 -0.41 1.82 16 20 C 0.07 1.96 5.33 -17.82 -0.09 1.87 16 21 N -0.91 -28.02 13.96 55.43 0.77 -27.24 16 22 Si 0.88 22.06 24.58 -169.99 -4.18 17.88 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.26 -6.39 6.44 56.52 0.36 -6.02 16 26 C -0.09 -1.77 6.03 -25.06 -0.15 -1.92 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 33 H 0.06 0.66 5.20 -51.93 -0.27 0.38 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.98 7.02 -51.93 -0.36 0.61 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.34 4.69 6.03 -39.29 -0.24 4.45 16 43 H 0.06 1.04 7.40 -51.93 -0.38 0.66 16 44 H 0.05 0.72 6.85 -51.93 -0.36 0.37 16 45 H 0.07 1.55 6.40 -51.93 -0.33 1.21 16 46 H 0.04 0.73 7.39 -51.93 -0.38 0.35 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.07 1.40 7.68 -51.93 -0.40 1.00 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -28.92 353.90 -8.96 -37.88 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -9.40 Total: 2.91 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -0.91 Total: -26.83 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.20 Total: -37.17 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.18 Total: 17.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.92 -8.96 -37.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.331 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds