Wall clock time and date at job start Mon Mar 30 2020 07:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46720 * 2 1 4 4 H 1.08998 * 109.47237 * 55.00586 * 3 2 1 5 5 C 1.52995 * 109.47639 * 294.99907 * 3 2 1 6 6 C 1.53010 * 109.46717 * 175.00193 * 3 2 1 7 7 C 1.52994 * 109.47014 * 185.00238 * 6 3 2 8 8 H 1.08999 * 109.47032 * 304.99846 * 7 6 3 9 9 C 1.52999 * 109.47043 * 185.00079 * 7 6 3 10 10 C 1.52998 * 109.47304 * 174.14438 * 9 7 6 11 11 N 1.46898 * 109.47382 * 64.99986 * 7 6 3 12 12 C 1.46896 * 111.00118 * 224.21834 * 11 7 6 13 13 H 1.09000 * 110.81895 * 330.19233 * 12 11 7 14 14 C 1.54959 * 110.76821 * 93.49067 * 12 11 7 15 15 C 1.54269 * 104.16570 * 156.22388 * 14 12 11 16 16 C 1.53877 * 106.63691 * 336.44580 * 15 14 12 17 17 H 1.08992 * 110.03224 * 119.30825 * 16 15 14 18 18 C 1.50703 * 110.03123 * 240.69218 * 16 15 14 19 19 H 1.07998 * 120.00053 * 118.54608 * 18 16 15 20 20 C 1.37872 * 119.99761 * 298.54555 * 18 16 15 21 21 N 1.31520 * 119.99924 * 180.02562 * 20 18 16 22 22 Si 1.86804 * 120.00174 * 0.02562 * 20 18 16 23 23 H 1.48498 * 109.47039 * 89.99901 * 22 20 18 24 24 H 1.48497 * 109.47201 * 210.00163 * 22 20 18 25 25 H 1.48493 * 109.46946 * 330.00135 * 22 20 18 26 26 C 1.54274 * 106.59973 * 359.97409 * 16 15 14 27 27 H 1.09005 * 109.46952 * 299.99862 * 1 2 3 28 28 H 1.09002 * 109.47430 * 59.99534 * 1 2 3 29 29 H 1.08993 * 109.47183 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46545 * 240.00096 * 2 1 3 31 31 H 1.09001 * 109.46924 * 120.00324 * 2 1 3 32 32 H 1.09004 * 109.46585 * 60.00281 * 5 3 2 33 33 H 1.09001 * 109.47225 * 180.02562 * 5 3 2 34 34 H 1.08998 * 109.47361 * 300.00603 * 5 3 2 35 35 H 1.08997 * 109.46740 * 64.99858 * 6 3 2 36 36 H 1.09006 * 109.46665 * 305.00388 * 6 3 2 37 37 H 1.09003 * 109.47071 * 294.14052 * 9 7 6 38 38 H 1.09000 * 109.47262 * 54.14159 * 9 7 6 39 39 H 1.09000 * 109.46910 * 300.82926 * 10 9 7 40 40 H 1.09003 * 109.47412 * 60.82818 * 10 9 7 41 41 H 1.08997 * 109.47129 * 180.83135 * 10 9 7 42 42 H 1.00900 * 111.00151 * 348.17489 * 11 7 6 43 43 H 1.08999 * 110.47660 * 37.56808 * 14 12 11 44 44 H 1.09005 * 110.52892 * 274.90266 * 14 12 11 45 45 H 1.08998 * 110.03476 * 217.13736 * 15 14 12 46 46 H 1.08997 * 110.03351 * 95.75259 * 15 14 12 47 47 H 0.97001 * 120.00227 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.48449 * 142.28472 * 26 16 15 49 49 H 1.08996 * 110.48741 * 264.79945 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4444 0.1257 7 6 4.0645 2.8850 0.2512 8 1 3.6971 3.4716 -0.5909 9 6 5.5944 2.8959 0.2514 10 6 6.0941 4.3419 0.2296 11 7 3.5704 3.4671 1.5061 12 6 3.0676 4.8306 1.2919 13 1 3.5989 5.3152 0.4727 14 6 1.5414 4.8177 1.0240 15 6 1.0755 6.2322 1.4265 16 6 2.1172 6.7727 2.4217 17 1 2.5778 7.6775 2.0254 18 6 1.4619 7.0652 3.7469 19 1 1.7803 6.5389 4.6346 20 6 0.4559 8.0046 3.8260 21 7 -0.1157 8.2602 4.9826 22 14 -0.0954 8.9144 2.2904 23 1 -1.1921 8.1583 1.6341 24 1 -0.5811 10.2670 2.6640 25 1 1.0489 9.0408 1.3525 26 6 3.1804 5.6676 2.5904 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5489 2.1253 -1.3968 33 1 1.9989 3.1542 -1.3074 34 1 2.0698 1.5877 -2.1491 35 1 4.0029 0.9836 -0.7597 36 1 3.8570 0.8799 1.0113 37 1 5.9612 2.3983 1.1492 38 1 5.9617 2.3713 -0.6306 39 1 5.7152 4.8438 -0.6607 40 1 5.7391 4.8625 1.1190 41 1 7.1839 4.3495 0.2149 42 1 2.8617 2.8815 1.9220 43 1 1.0522 4.0647 1.6418 44 1 1.3402 4.6358 -0.0318 45 1 0.0960 6.1815 1.9020 46 1 1.0305 6.8748 0.5472 47 1 -0.8232 8.9215 5.0383 48 1 4.1749 6.1051 2.6771 49 1 2.9573 5.0536 3.4629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:46 Heat of formation + Delta-G solvation = -60.334187 kcal Electronic energy + Delta-G solvation = -22043.631454 eV Core-core repulsion = 19195.977676 eV Total energy + Delta-G solvation = -2847.653777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24675 -38.35141 -36.20606 -34.54144 -32.62728 -31.51860 -30.00458 -29.17249 -27.81291 -25.94768 -24.89812 -23.43690 -21.72893 -21.26445 -20.67035 -20.41456 -18.60613 -17.05632 -16.75980 -16.23351 -16.17023 -15.56384 -15.48391 -14.94940 -14.59332 -14.45715 -14.21655 -14.01212 -13.82792 -13.60275 -13.37027 -13.06770 -12.88731 -12.81311 -12.59415 -12.36535 -12.26392 -12.18797 -12.04937 -11.90104 -11.77768 -11.62139 -11.48522 -11.46194 -11.39087 -11.27855 -11.00229 -10.90940 -10.87378 -10.70818 -9.07451 -8.27432 -6.29473 1.31766 1.35016 1.45496 2.35071 3.07300 3.32262 3.73177 3.91657 3.97846 4.04820 4.08143 4.18276 4.34405 4.41148 4.41908 4.51017 4.58474 4.64300 4.68950 4.75141 4.77755 4.84964 4.87325 4.91058 4.93819 4.95685 5.05493 5.09646 5.12551 5.17680 5.19358 5.23368 5.25457 5.29441 5.30627 5.33020 5.38449 5.46598 5.56970 5.58729 5.60497 5.64196 5.67109 5.84474 6.34593 6.40324 6.65926 6.78011 7.35238 8.89693 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.005410 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.309656 B = 5174.132386 C = 6070.921588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.096 4.096 4 H 0.056 0.944 5 C -0.148 4.148 6 C -0.116 4.116 7 C 0.085 3.915 8 H 0.055 0.945 9 C -0.106 4.106 10 C -0.149 4.149 11 N -0.678 5.678 12 C 0.101 3.899 13 H 0.084 0.916 14 C -0.130 4.130 15 C -0.129 4.129 16 C 0.003 3.997 17 H 0.022 0.978 18 C -0.509 4.509 19 H 0.028 0.972 20 C 0.009 3.991 21 N -0.955 5.955 22 Si 0.943 3.057 23 H -0.266 1.266 24 H -0.295 1.295 25 H -0.245 1.245 26 C -0.086 4.086 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.341 0.659 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.040 0.960 46 H 0.050 0.950 47 H 0.264 0.736 48 H 0.050 0.950 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 -16.003 -16.574 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.115 4.115 4 H 0.074 0.926 5 C -0.205 4.205 6 C -0.154 4.154 7 C -0.025 4.025 8 H 0.073 0.927 9 C -0.144 4.144 10 C -0.207 4.207 11 N -0.309 5.309 12 C -0.009 4.009 13 H 0.102 0.898 14 C -0.169 4.169 15 C -0.168 4.168 16 C -0.016 4.016 17 H 0.040 0.960 18 C -0.547 4.547 19 H 0.047 0.953 20 C -0.187 4.187 21 N -0.596 5.596 22 Si 0.768 3.232 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.168 1.168 26 C -0.124 4.124 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.161 0.839 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.494 -15.720 -16.288 23.845 hybrid contribution -1.559 0.770 -0.114 1.743 sum 5.935 -14.950 -16.403 22.973 Atomic orbital electron populations 1.21836 0.96196 1.01703 1.01572 1.21516 0.95644 0.95724 1.02193 1.21208 0.95507 0.96581 0.98180 0.92565 1.21938 1.01208 1.00231 0.97172 1.21915 0.94775 0.95857 1.02891 1.21737 0.95302 0.94779 0.90660 0.92741 1.21522 0.94471 0.96759 1.01634 1.21736 1.00451 0.97309 1.01183 1.60539 1.41928 1.02427 1.26028 1.22510 0.92347 0.89486 0.96555 0.89820 1.22930 0.97317 0.96082 1.00611 1.22463 0.99346 0.97162 0.97823 1.19746 0.93608 0.95015 0.93248 0.95987 1.21454 1.17955 1.20948 0.94375 0.95333 1.25898 0.96379 0.97512 0.98922 1.70074 1.27090 1.35527 1.26917 0.85889 0.79750 0.77215 0.80372 1.19113 1.22235 1.16823 1.22140 0.97126 0.95901 0.97237 0.93767 0.92508 0.92234 0.91255 0.92052 0.92835 0.93225 0.91866 0.90113 0.91446 0.92295 0.90960 0.93406 0.93547 0.92714 0.83900 0.92351 0.90756 0.94096 0.93149 0.92765 0.93126 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.67 71.98 0.70 -1.85 16 2 C -0.11 -1.76 5.40 30.60 0.17 -1.59 16 3 C -0.10 -1.68 2.29 -10.79 -0.02 -1.71 16 4 H 0.06 1.20 6.03 -2.39 -0.01 1.19 16 5 C -0.15 -2.55 8.68 71.98 0.63 -1.93 16 6 C -0.12 -1.95 4.11 30.60 0.13 -1.83 16 7 C 0.08 1.73 1.98 44.91 0.09 1.82 16 8 H 0.05 1.16 5.62 -2.39 -0.01 1.14 16 9 C -0.11 -2.06 5.60 30.59 0.17 -1.89 16 10 C -0.15 -3.24 8.98 71.98 0.65 -2.60 16 11 N -0.68 -17.70 5.89 -462.78 -2.73 -20.42 16 12 C 0.10 3.13 2.19 46.23 0.10 3.23 16 13 H 0.08 2.47 6.78 -2.39 -0.02 2.46 16 14 C -0.13 -4.20 6.19 31.69 0.20 -4.00 16 15 C -0.13 -5.34 4.47 31.32 0.14 -5.20 16 16 C 0.00 0.15 2.40 -10.81 -0.03 0.12 16 17 H 0.02 1.05 7.22 -2.39 -0.02 1.03 16 18 C -0.51 -29.79 8.92 25.60 0.23 -29.56 16 19 H 0.03 1.86 7.80 -2.91 -0.02 1.84 16 20 C 0.01 0.53 5.33 84.65 0.45 0.98 16 21 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 22 Si 0.94 45.56 24.58 68.60 1.69 47.24 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.24 -10.94 6.44 99.48 0.64 -10.30 16 26 C -0.09 -3.44 6.03 31.67 0.19 -3.25 16 27 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 0.91 6.57 -2.39 -0.02 0.89 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.94 6.56 -2.39 -0.02 0.93 16 33 H 0.05 0.94 5.20 -2.39 -0.01 0.93 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 1.22 7.02 -2.39 -0.02 1.20 16 41 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.34 8.98 6.03 -89.69 -0.54 8.44 16 43 H 0.06 1.92 7.40 -2.39 -0.02 1.90 16 44 H 0.07 2.03 6.85 -2.38 -0.02 2.02 16 45 H 0.04 1.88 6.40 -2.39 -0.02 1.87 16 46 H 0.05 1.92 7.39 -2.39 -0.02 1.90 16 47 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 48 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.04 1.93 7.68 -2.39 -0.02 1.91 16 Total: -1.00 -64.35 353.90 3.32 -61.03 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.28 Total: 22.36 kcal Atomic # 6 Polarization: -53.03 SS G_CDS: 3.78 Total: -49.25 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -2.43 Total: -81.38 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.69 Total: 47.24 kcal Total: -64.35 3.32 -61.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.700 kcal (2) G-P(sol) polarization free energy of solvation -64.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds