Wall clock time and date at job start Mon Mar 30 2020 07:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47441 * 2 1 4 4 H 1.08994 * 109.47201 * 305.00538 * 3 2 1 5 5 C 1.53007 * 109.46902 * 65.00009 * 3 2 1 6 6 C 1.52994 * 109.47307 * 184.99994 * 3 2 1 7 7 C 1.52996 * 109.47438 * 174.14789 * 6 3 2 8 8 H 1.08999 * 109.47284 * 53.18432 * 7 6 3 9 9 C 1.52996 * 109.47580 * 173.18457 * 7 6 3 10 10 C 1.53003 * 109.47470 * 185.79941 * 9 7 6 11 11 N 1.46902 * 109.47017 * 293.18697 * 7 6 3 12 12 C 1.46900 * 110.99774 * 304.40994 * 11 7 6 13 13 H 1.09000 * 110.02110 * 347.80616 * 12 11 7 14 14 C 1.53883 * 110.02995 * 109.24178 * 12 11 7 15 15 C 1.54264 * 106.59808 * 119.28320 * 14 12 11 16 16 C 1.54893 * 104.19546 * 23.61331 * 15 14 12 17 17 H 1.08998 * 110.91985 * 80.44232 * 16 15 14 18 18 C 1.50701 * 110.75827 * 203.74452 * 16 15 14 19 19 H 1.07999 * 120.00532 * 113.32424 * 18 16 15 20 20 C 1.37881 * 119.99337 * 293.32704 * 18 16 15 21 21 N 1.31506 * 120.00459 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99622 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47027 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47189 * 299.99753 * 22 20 18 25 25 H 1.48503 * 109.47161 * 59.99768 * 22 20 18 26 26 C 1.54266 * 110.03403 * 226.40702 * 12 11 7 27 27 H 1.09000 * 109.46943 * 59.99555 * 1 2 3 28 28 H 1.08991 * 109.47716 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47040 * 300.00069 * 1 2 3 30 30 H 1.09000 * 109.46792 * 240.00092 * 2 1 3 31 31 H 1.09000 * 109.46943 * 120.00445 * 2 1 3 32 32 H 1.09002 * 109.47063 * 299.99899 * 5 3 2 33 33 H 1.09004 * 109.46846 * 60.00077 * 5 3 2 34 34 H 1.09002 * 109.47255 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47378 * 54.14381 * 6 3 2 36 36 H 1.09006 * 109.47202 * 294.14655 * 6 3 2 37 37 H 1.08996 * 109.47106 * 305.80019 * 9 7 6 38 38 H 1.08999 * 109.47257 * 65.79751 * 9 7 6 39 39 H 1.09002 * 109.46780 * 304.50874 * 10 9 7 40 40 H 1.08996 * 109.47214 * 64.50940 * 10 9 7 41 41 H 1.09005 * 109.47038 * 184.51472 * 10 9 7 42 42 H 1.00898 * 111.00279 * 68.36982 * 11 7 6 43 43 H 1.08999 * 110.03432 * 238.56815 * 14 12 11 44 44 H 1.09004 * 110.02831 * 359.95802 * 14 12 11 45 45 H 1.08994 * 110.48987 * 264.93557 * 15 14 12 46 46 H 1.09000 * 110.48697 * 142.28769 * 15 14 12 47 47 H 0.97000 * 120.00185 * 180.02562 * 21 20 18 48 48 H 1.09002 * 110.48072 * 98.43460 * 26 12 11 49 49 H 1.08996 * 110.48374 * 335.78907 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1257 7 6 4.0629 2.8834 -0.2724 8 1 3.6684 3.4894 0.5432 9 6 5.5920 2.9011 -0.2275 10 6 6.0857 4.3494 -0.2286 11 7 3.6043 3.4318 -1.5558 12 6 4.0302 2.5801 -2.6744 13 1 4.7677 1.8545 -2.3313 14 6 2.8145 1.8532 -3.2760 15 6 2.7152 2.3045 -4.7478 16 6 4.1532 2.7565 -5.1044 17 1 4.7840 1.8989 -5.3381 18 6 4.1370 3.7335 -6.2517 19 1 4.4333 4.7596 -6.0915 20 6 3.7437 3.3172 -7.5059 21 7 3.3832 2.0676 -7.7011 22 14 3.7242 4.5279 -8.9283 23 1 3.2669 3.8367 -10.1605 24 1 2.7981 5.6455 -8.6145 25 1 5.0927 5.0640 -9.1409 26 6 4.6271 3.4476 -3.8017 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5490 2.1252 1.3970 33 1 2.0700 1.5874 2.1492 34 1 1.9991 3.1540 1.3077 35 1 3.8578 0.8672 -1.0028 36 1 4.0035 0.9972 0.7664 37 1 5.9347 2.4012 0.6784 38 1 5.9873 2.3819 -1.1006 39 1 5.6770 4.8718 -1.0936 40 1 5.7571 4.8459 0.6843 41 1 7.1745 4.3620 -0.2775 42 1 2.6033 3.5581 -1.5582 43 1 2.9618 0.7744 -3.2254 44 1 1.9088 2.1320 -2.7374 45 1 2.0185 3.1370 -4.8454 46 1 2.4086 1.4727 -5.3820 47 1 3.1069 1.7747 -8.5836 48 1 5.7157 3.4499 -3.7454 49 1 4.2391 4.4647 -3.7465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:49 Heat of formation + Delta-G solvation = -44.806198 kcal Electronic energy + Delta-G solvation = -22042.703477 eV Core-core repulsion = 19195.723044 eV Total energy + Delta-G solvation = -2846.980433 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.26181 -36.66857 -35.06119 -32.53701 -31.13978 -30.23437 -27.96967 -27.72989 -26.37230 -24.92590 -23.57044 -22.57320 -20.26723 -20.00017 -19.11565 -18.60203 -16.37971 -16.12792 -15.33333 -14.77348 -14.51767 -14.27429 -14.08647 -13.75632 -13.36488 -13.17916 -12.82874 -12.50092 -12.40291 -12.23824 -12.09589 -11.85047 -11.61447 -11.54504 -11.23284 -10.96180 -10.83916 -10.77716 -10.74627 -10.66596 -10.49442 -10.41485 -10.24924 -10.12854 -9.85239 -9.57485 -9.46611 -9.02904 -8.70356 -8.28774 -7.81106 -5.92779 -3.94410 3.37100 3.41315 3.44462 4.49349 4.55691 4.71616 4.84428 4.88109 5.16754 5.27124 5.34627 5.36569 5.38669 5.46616 5.50832 5.58040 5.64004 5.73402 5.76465 5.79835 5.85717 5.88847 5.97907 6.00047 6.01648 6.06077 6.14091 6.17125 6.21328 6.31994 6.36358 6.43651 6.56215 6.63281 6.65248 6.80841 6.85466 6.97550 7.18868 7.24142 7.42980 7.71188 7.78687 7.88287 8.00530 8.13590 8.57194 9.08746 9.69087 11.16969 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.004968 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.417141 B = 5634.691203 C = 6664.893026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.094 4.094 4 H 0.073 0.927 5 C -0.149 4.149 6 C -0.151 4.151 7 C 0.085 3.915 8 H 0.076 0.924 9 C -0.115 4.115 10 C -0.143 4.143 11 N -0.673 5.673 12 C 0.082 3.918 13 H 0.061 0.939 14 C -0.142 4.142 15 C -0.100 4.100 16 C 0.048 3.952 17 H 0.028 0.972 18 C -0.508 4.508 19 H 0.054 0.946 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.887 3.113 23 H -0.289 1.289 24 H -0.278 1.278 25 H -0.278 1.278 26 C -0.100 4.100 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.336 0.664 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.060 0.940 47 H 0.258 0.742 48 H 0.040 0.960 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -2.166 17.710 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.113 4.113 4 H 0.091 0.909 5 C -0.206 4.206 6 C -0.190 4.190 7 C -0.025 4.025 8 H 0.094 0.906 9 C -0.153 4.153 10 C -0.200 4.200 11 N -0.304 5.304 12 C -0.027 4.027 13 H 0.079 0.921 14 C -0.181 4.181 15 C -0.138 4.138 16 C 0.030 3.970 17 H 0.046 0.954 18 C -0.547 4.547 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.715 3.285 23 H -0.215 1.215 24 H -0.203 1.203 25 H -0.204 1.204 26 C -0.139 4.139 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.156 0.844 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.517 -1.847 17.514 17.676 hybrid contribution -0.717 -0.310 -0.743 1.078 sum -2.234 -2.157 16.771 17.056 Atomic orbital electron populations 1.21819 0.96103 1.01301 1.01839 1.21544 0.95725 0.96556 1.01700 1.21201 0.95625 0.96128 0.98316 0.90865 1.21933 1.00986 1.00515 0.97139 1.22460 0.95225 0.99156 1.02145 1.21677 0.95158 0.92845 0.92846 0.90600 1.21588 0.94813 0.97767 1.01150 1.21651 0.99592 0.96531 1.02260 1.60848 1.18321 1.49836 1.01384 1.22339 0.96140 0.93542 0.90704 0.92064 1.22900 0.96502 0.98890 0.99827 1.22264 1.00688 0.99852 0.91016 1.19570 0.91731 0.95016 0.90717 0.95400 1.21128 1.44111 0.96079 0.93346 0.92779 1.24975 0.95410 0.94993 0.98571 1.69950 1.45381 1.15354 1.22468 0.86743 0.78383 0.81428 0.81922 1.21462 1.20348 1.20358 1.22464 0.97750 0.99180 0.94484 0.92621 0.93117 0.92748 0.92002 0.92482 0.92788 0.93089 0.92510 0.91239 0.92325 0.92798 0.91729 0.90853 0.93829 0.93885 0.84437 0.93546 0.93541 0.93622 0.92142 0.93195 0.94157 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.67 37.16 0.36 -1.14 16 2 C -0.12 -1.23 5.40 -26.73 -0.14 -1.38 16 3 C -0.09 -1.02 2.27 -90.62 -0.21 -1.22 16 4 H 0.07 0.89 5.02 -51.93 -0.26 0.63 16 5 C -0.15 -1.41 8.73 37.16 0.32 -1.08 16 6 C -0.15 -1.74 3.75 -26.74 -0.10 -1.84 16 7 C 0.09 1.04 2.39 -67.72 -0.16 0.88 16 8 H 0.08 0.88 6.31 -51.93 -0.33 0.55 16 9 C -0.12 -1.43 5.30 -26.73 -0.14 -1.57 16 10 C -0.14 -1.78 9.86 37.16 0.37 -1.41 16 11 N -0.67 -9.85 5.65 -98.57 -0.56 -10.40 16 12 C 0.08 1.41 2.13 -66.59 -0.14 1.27 16 13 H 0.06 1.04 4.94 -51.93 -0.26 0.79 16 14 C -0.14 -2.59 5.75 -25.61 -0.15 -2.74 16 15 C -0.10 -2.31 5.76 -25.07 -0.14 -2.45 16 16 C 0.05 1.21 2.73 -89.77 -0.24 0.97 16 17 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 18 C -0.51 -14.15 8.49 -34.44 -0.29 -14.45 16 19 H 0.05 1.50 7.77 -52.49 -0.41 1.09 16 20 C 0.06 1.73 5.36 -17.82 -0.10 1.64 16 21 N -0.89 -26.03 12.42 55.43 0.69 -25.34 16 22 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C -0.10 -2.11 5.95 -25.07 -0.15 -2.26 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.49 6.57 -51.92 -0.34 0.14 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.49 6.57 -51.93 -0.34 0.14 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.54 6.46 -51.93 -0.34 0.20 16 35 H 0.07 0.92 5.91 -51.93 -0.31 0.61 16 36 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.90 6.30 -51.93 -0.33 0.57 16 39 H 0.07 1.06 7.66 -51.93 -0.40 0.66 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.34 4.85 6.47 -39.29 -0.25 4.60 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.77 5.60 -51.93 -0.29 0.48 16 45 H 0.04 1.10 8.04 -51.93 -0.42 0.68 16 46 H 0.06 1.53 7.64 -51.93 -0.40 1.14 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.06 1.36 7.94 -51.93 -0.41 0.95 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -27.57 357.62 -9.70 -37.27 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -9.28 Total: 3.26 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -0.92 Total: -26.78 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.13 Total: -35.75 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.57 -9.70 -37.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.541 kcal (2) G-P(sol) polarization free energy of solvation -27.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds