Wall clock time and date at job start Mon Mar 30 2020 07:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47441 * 2 1 4 4 H 1.08994 * 109.47201 * 305.00538 * 3 2 1 5 5 C 1.53007 * 109.46902 * 65.00009 * 3 2 1 6 6 C 1.52994 * 109.47307 * 184.99994 * 3 2 1 7 7 C 1.52996 * 109.47438 * 174.14789 * 6 3 2 8 8 H 1.08999 * 109.47284 * 53.18432 * 7 6 3 9 9 C 1.52996 * 109.47580 * 173.18457 * 7 6 3 10 10 C 1.53003 * 109.47470 * 185.79941 * 9 7 6 11 11 N 1.46902 * 109.47017 * 293.18697 * 7 6 3 12 12 C 1.46900 * 110.99774 * 304.40994 * 11 7 6 13 13 H 1.09000 * 110.02110 * 347.80616 * 12 11 7 14 14 C 1.53883 * 110.02995 * 109.24178 * 12 11 7 15 15 C 1.54264 * 106.59808 * 119.28320 * 14 12 11 16 16 C 1.54893 * 104.19546 * 23.61331 * 15 14 12 17 17 H 1.08998 * 110.91985 * 80.44232 * 16 15 14 18 18 C 1.50701 * 110.75827 * 203.74452 * 16 15 14 19 19 H 1.07999 * 120.00532 * 113.32424 * 18 16 15 20 20 C 1.37881 * 119.99337 * 293.32704 * 18 16 15 21 21 N 1.31506 * 120.00459 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99622 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47027 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47189 * 299.99753 * 22 20 18 25 25 H 1.48503 * 109.47161 * 59.99768 * 22 20 18 26 26 C 1.54266 * 110.03403 * 226.40702 * 12 11 7 27 27 H 1.09000 * 109.46943 * 59.99555 * 1 2 3 28 28 H 1.08991 * 109.47716 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47040 * 300.00069 * 1 2 3 30 30 H 1.09000 * 109.46792 * 240.00092 * 2 1 3 31 31 H 1.09000 * 109.46943 * 120.00445 * 2 1 3 32 32 H 1.09002 * 109.47063 * 299.99899 * 5 3 2 33 33 H 1.09004 * 109.46846 * 60.00077 * 5 3 2 34 34 H 1.09002 * 109.47255 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47378 * 54.14381 * 6 3 2 36 36 H 1.09006 * 109.47202 * 294.14655 * 6 3 2 37 37 H 1.08996 * 109.47106 * 305.80019 * 9 7 6 38 38 H 1.08999 * 109.47257 * 65.79751 * 9 7 6 39 39 H 1.09002 * 109.46780 * 304.50874 * 10 9 7 40 40 H 1.08996 * 109.47214 * 64.50940 * 10 9 7 41 41 H 1.09005 * 109.47038 * 184.51472 * 10 9 7 42 42 H 1.00898 * 111.00279 * 68.36982 * 11 7 6 43 43 H 1.08999 * 110.03432 * 238.56815 * 14 12 11 44 44 H 1.09004 * 110.02831 * 359.95802 * 14 12 11 45 45 H 1.08994 * 110.48987 * 264.93557 * 15 14 12 46 46 H 1.09000 * 110.48697 * 142.28769 * 15 14 12 47 47 H 0.97000 * 120.00185 * 180.02562 * 21 20 18 48 48 H 1.09002 * 110.48072 * 98.43460 * 26 12 11 49 49 H 1.08996 * 110.48374 * 335.78907 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1257 7 6 4.0629 2.8834 -0.2724 8 1 3.6684 3.4894 0.5432 9 6 5.5920 2.9011 -0.2275 10 6 6.0857 4.3494 -0.2286 11 7 3.6043 3.4318 -1.5558 12 6 4.0302 2.5801 -2.6744 13 1 4.7677 1.8545 -2.3313 14 6 2.8145 1.8532 -3.2760 15 6 2.7152 2.3045 -4.7478 16 6 4.1532 2.7565 -5.1044 17 1 4.7840 1.8989 -5.3381 18 6 4.1370 3.7335 -6.2517 19 1 4.4333 4.7596 -6.0915 20 6 3.7437 3.3172 -7.5059 21 7 3.3832 2.0676 -7.7011 22 14 3.7242 4.5279 -8.9283 23 1 3.2669 3.8367 -10.1605 24 1 2.7981 5.6455 -8.6145 25 1 5.0927 5.0640 -9.1409 26 6 4.6271 3.4476 -3.8017 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.5490 2.1252 1.3970 33 1 2.0700 1.5874 2.1492 34 1 1.9991 3.1540 1.3077 35 1 3.8578 0.8672 -1.0028 36 1 4.0035 0.9972 0.7664 37 1 5.9347 2.4012 0.6784 38 1 5.9873 2.3819 -1.1006 39 1 5.6770 4.8718 -1.0936 40 1 5.7571 4.8459 0.6843 41 1 7.1745 4.3620 -0.2775 42 1 2.6033 3.5581 -1.5582 43 1 2.9618 0.7744 -3.2254 44 1 1.9088 2.1320 -2.7374 45 1 2.0185 3.1370 -4.8454 46 1 2.4086 1.4727 -5.3820 47 1 3.1069 1.7747 -8.5836 48 1 5.7157 3.4499 -3.7454 49 1 4.2391 4.4647 -3.7465 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:48 Heat of formation + Delta-G solvation = -58.229888 kcal Electronic energy + Delta-G solvation = -22043.285572 eV Core-core repulsion = 19195.723044 eV Total energy + Delta-G solvation = -2847.562528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47201 -38.04108 -36.19928 -34.45637 -32.38903 -31.27435 -29.76026 -28.76940 -27.84188 -26.11961 -25.26361 -23.47005 -21.57960 -21.09497 -20.86907 -19.83526 -18.32962 -17.50715 -16.54574 -16.21613 -15.93875 -15.34821 -15.28317 -15.18474 -14.54833 -14.25192 -14.13128 -14.03756 -13.59499 -13.40814 -13.29710 -12.94059 -12.91664 -12.73154 -12.63562 -12.54021 -12.37029 -12.17252 -11.98048 -11.87398 -11.75609 -11.58597 -11.47044 -11.37587 -11.23833 -11.11814 -10.92726 -10.86742 -10.77402 -10.43268 -9.06148 -8.09465 -6.18642 1.41194 1.42706 1.50269 2.44910 3.20813 3.42190 3.73291 4.00213 4.02624 4.05811 4.18292 4.22232 4.33596 4.41755 4.47202 4.49872 4.64915 4.70475 4.74864 4.77085 4.87223 4.92947 4.94370 4.95554 5.07210 5.11077 5.11878 5.14793 5.17245 5.22955 5.24805 5.27795 5.29753 5.30951 5.36209 5.46190 5.47699 5.50165 5.59888 5.65160 5.65881 5.68492 5.95145 6.03765 6.41760 6.45495 6.70323 6.92359 7.48412 8.99224 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019876 B = 0.004968 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.417141 B = 5634.691203 C = 6664.893026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.092 4.092 4 H 0.058 0.942 5 C -0.145 4.145 6 C -0.145 4.145 7 C 0.088 3.912 8 H 0.092 0.908 9 C -0.116 4.116 10 C -0.140 4.140 11 N -0.674 5.674 12 C 0.101 3.899 13 H 0.068 0.932 14 C -0.127 4.127 15 C -0.092 4.092 16 C 0.039 3.961 17 H -0.005 1.005 18 C -0.529 4.529 19 H 0.050 0.950 20 C 0.012 3.988 21 N -0.922 5.922 22 Si 0.951 3.049 23 H -0.285 1.285 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.090 4.090 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.340 0.660 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.031 0.969 46 H 0.030 0.970 47 H 0.259 0.741 48 H 0.038 0.962 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -1.644 19.816 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.110 4.110 4 H 0.077 0.923 5 C -0.202 4.202 6 C -0.184 4.184 7 C -0.021 4.021 8 H 0.110 0.890 9 C -0.153 4.153 10 C -0.198 4.198 11 N -0.305 5.305 12 C -0.009 4.009 13 H 0.086 0.914 14 C -0.165 4.165 15 C -0.130 4.130 16 C 0.020 3.980 17 H 0.013 0.987 18 C -0.567 4.567 19 H 0.068 0.932 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.776 3.224 23 H -0.210 1.210 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.129 4.129 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.160 0.840 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.793 -1.316 19.638 19.763 hybrid contribution -0.603 -0.478 -1.382 1.582 sum -2.395 -1.794 18.256 18.500 Atomic orbital electron populations 1.21809 0.95601 1.01688 1.01846 1.21533 0.96174 0.96312 1.01458 1.21157 0.94924 0.96275 0.98653 0.92348 1.21895 1.01415 1.00442 0.96408 1.22385 0.95826 0.98213 1.01964 1.21746 0.95148 0.93542 0.91690 0.88983 1.21610 0.94766 0.97662 1.01307 1.21610 0.99840 0.96437 1.01872 1.60717 1.18668 1.49391 1.01747 1.21978 0.95497 0.92874 0.90506 0.91406 1.22759 0.98113 0.99202 0.96455 1.22045 0.98932 0.98118 0.93949 1.19557 0.92515 0.93811 0.92145 0.98698 1.21505 1.44076 0.96412 0.94742 0.93185 1.25752 0.95059 0.96680 1.01167 1.70081 1.46085 1.17010 1.22982 0.85728 0.78654 0.79295 0.78692 1.20999 1.19611 1.19671 1.22294 0.97753 0.98825 0.94009 0.93670 0.92612 0.91651 0.93503 0.91471 0.92302 0.92186 0.92378 0.93096 0.90866 0.90712 0.93608 0.93228 0.92338 0.93454 0.83969 0.93089 0.91361 0.95048 0.95150 0.93222 0.94318 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.67 71.98 0.70 -2.00 16 2 C -0.12 -2.23 5.40 30.59 0.17 -2.06 16 3 C -0.09 -1.76 2.27 -10.79 -0.02 -1.78 16 4 H 0.06 1.30 5.02 -2.39 -0.01 1.29 16 5 C -0.14 -2.28 8.73 71.98 0.63 -1.65 16 6 C -0.14 -2.98 3.75 30.59 0.11 -2.87 16 7 C 0.09 1.94 2.39 44.91 0.11 2.05 16 8 H 0.09 1.81 6.31 -2.39 -0.02 1.79 16 9 C -0.12 -2.60 5.30 30.59 0.16 -2.44 16 10 C -0.14 -3.21 9.86 71.98 0.71 -2.50 16 11 N -0.67 -18.69 5.65 -465.76 -2.63 -21.32 16 12 C 0.10 3.43 2.13 45.64 0.10 3.53 16 13 H 0.07 2.26 4.94 -2.39 -0.01 2.25 16 14 C -0.13 -4.58 5.75 31.32 0.18 -4.40 16 15 C -0.09 -4.39 5.76 31.67 0.18 -4.21 16 16 C 0.04 2.00 2.73 -10.25 -0.03 1.97 16 17 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 18 C -0.53 -30.28 8.49 25.60 0.22 -30.06 16 19 H 0.05 2.83 7.77 -2.91 -0.02 2.80 16 20 C 0.01 0.67 5.36 84.66 0.45 1.13 16 21 N -0.92 -55.28 12.42 21.45 0.27 -55.01 16 22 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 26 C -0.09 -3.85 5.95 31.67 0.19 -3.66 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.01 6.57 -2.38 -0.02 0.99 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 0.88 6.57 -2.39 -0.02 0.86 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.91 6.46 -2.39 -0.02 0.89 16 35 H 0.05 1.26 5.91 -2.39 -0.01 1.24 16 36 H 0.07 1.33 8.13 -2.38 -0.02 1.31 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.21 6.30 -2.39 -0.02 1.19 16 39 H 0.05 1.37 7.66 -2.39 -0.02 1.35 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.34 9.17 6.47 -89.70 -0.58 8.59 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 2.18 5.60 -2.39 -0.01 2.17 16 45 H 0.03 1.54 8.04 -2.39 -0.02 1.52 16 46 H 0.03 1.59 7.64 -2.39 -0.02 1.57 16 47 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 48 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.05 2.34 7.94 -2.39 -0.02 2.32 16 Total: -1.00 -60.61 357.62 3.82 -56.78 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.31 Total: 21.57 kcal Atomic # 6 Polarization: -52.80 SS G_CDS: 3.85 Total: -48.95 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -2.36 Total: -76.33 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -60.61 3.82 -56.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.448 kcal (2) G-P(sol) polarization free energy of solvation -60.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds