Wall clock time and date at job start Mon Mar 30 2020 07:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47531 * 2 1 4 4 C 1.53000 * 109.47732 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47197 * 54.99401 * 4 3 2 6 6 C 1.53005 * 109.46788 * 294.99966 * 4 3 2 7 7 C 1.52995 * 109.47210 * 174.99923 * 4 3 2 8 8 H 1.08999 * 109.47288 * 54.88059 * 7 4 3 9 9 C 1.52998 * 109.47085 * 294.87519 * 7 4 3 10 10 C 1.53001 * 109.47185 * 173.29259 * 9 7 4 11 11 N 1.46903 * 109.47106 * 174.88016 * 7 4 3 12 12 C 1.46899 * 110.99846 * 61.03025 * 11 7 4 13 13 H 1.09000 * 110.54216 * 343.49865 * 12 11 7 14 14 C 1.54461 * 110.66052 * 106.13310 * 12 11 7 15 15 C 1.53878 * 106.68672 * 142.05023 * 14 12 11 16 16 C 1.54264 * 106.59726 * 0.15636 * 15 14 12 17 17 H 1.09008 * 110.48287 * 95.06906 * 16 15 14 18 18 C 1.50703 * 110.48706 * 217.70887 * 16 15 14 19 19 H 1.08002 * 119.99678 * 114.77325 * 18 16 15 20 20 C 1.37876 * 120.00267 * 294.77863 * 18 16 15 21 21 N 1.31520 * 119.99801 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00153 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46963 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47364 * 119.99833 * 22 20 18 25 25 H 1.48497 * 109.47201 * 239.99913 * 22 20 18 26 26 C 1.54891 * 104.19729 * 336.39158 * 16 15 14 27 27 H 1.09006 * 109.47103 * 60.00716 * 1 2 3 28 28 H 1.09007 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47357 * 300.00346 * 1 2 3 30 30 H 1.09000 * 109.47357 * 239.99654 * 2 1 3 31 31 H 1.09007 * 109.47363 * 119.99762 * 2 1 3 32 32 H 1.09000 * 109.47083 * 59.99486 * 3 2 1 33 33 H 1.09005 * 109.46799 * 299.99479 * 3 2 1 34 34 H 1.08997 * 109.47196 * 59.99805 * 6 4 3 35 35 H 1.08997 * 109.46881 * 180.02562 * 6 4 3 36 36 H 1.08999 * 109.46790 * 299.99684 * 6 4 3 37 37 H 1.08992 * 109.47735 * 293.30031 * 9 7 4 38 38 H 1.09002 * 109.46889 * 53.30205 * 9 7 4 39 39 H 1.08997 * 109.47384 * 182.66057 * 10 9 7 40 40 H 1.08993 * 109.47381 * 302.66792 * 10 9 7 41 41 H 1.09006 * 109.46780 * 62.66611 * 10 9 7 42 42 H 1.00896 * 110.99626 * 297.07780 * 11 7 4 43 43 H 1.09004 * 109.86077 * 22.80785 * 14 12 11 44 44 H 1.09002 * 110.12071 * 261.43292 * 14 12 11 45 45 H 1.08998 * 110.03096 * 240.87112 * 15 14 12 46 46 H 1.09000 * 110.03521 * 119.44233 * 15 14 12 47 47 H 0.96999 * 119.99637 * 180.02562 * 21 20 18 48 48 H 1.08996 * 110.75348 * 156.25806 * 26 16 15 49 49 H 1.09004 * 110.75377 * 279.44147 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8408 6 6 4.0794 0.8331 1.3084 7 6 4.0800 2.8794 -0.1251 8 1 3.6434 3.4904 0.6650 9 6 3.6785 3.4456 -1.4886 10 6 4.0400 4.9310 -1.5505 11 7 5.5438 2.8921 -0.0015 12 6 6.1689 2.0970 -1.0669 13 1 5.4348 1.4422 -1.5363 14 6 6.8223 3.0171 -2.1216 15 6 8.1289 2.3312 -2.5576 16 6 8.2246 1.0160 -1.7571 17 1 7.8246 0.1854 -2.3388 18 6 9.6523 0.7435 -1.3589 19 1 9.9319 0.7465 -0.3157 20 6 10.6015 0.4905 -2.3263 21 7 10.2611 0.4875 -3.5967 22 14 12.3713 0.1535 -1.8328 23 1 12.4930 0.2143 -0.3540 24 1 12.7688 -1.1967 -2.3065 25 1 13.2590 1.1741 -2.4455 26 6 7.3511 1.2700 -0.5034 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9562 -0.8901 34 1 3.7160 -0.1906 1.3979 35 1 5.1694 0.8335 1.3090 36 1 3.7157 1.4227 2.1499 37 1 4.2091 2.9094 -2.2753 38 1 2.6041 3.3271 -1.6291 39 1 3.7113 5.3456 -2.5035 40 1 3.5465 5.4594 -0.7349 41 1 5.1199 5.0463 -1.4573 42 1 5.8325 2.5672 0.9090 43 1 7.0403 3.9897 -1.6804 44 1 6.1589 3.1355 -2.9783 45 1 8.9810 2.9709 -2.3279 46 1 8.0997 2.1168 -3.6259 47 1 10.9289 0.3091 -4.2773 48 1 6.9980 0.3290 -0.0816 49 1 7.9027 1.8428 0.2421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453296022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:29 Heat of formation + Delta-G solvation = -46.440119 kcal Electronic energy + Delta-G solvation = -21864.918010 eV Core-core repulsion = 19017.866725 eV Total energy + Delta-G solvation = -2847.051285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.27947 -36.68121 -34.65152 -32.45019 -31.84813 -30.68437 -28.00121 -26.89870 -26.63348 -24.88588 -23.62056 -22.00445 -20.80529 -20.28361 -19.14058 -18.36740 -16.16903 -15.96868 -15.50621 -15.13334 -14.56866 -14.31059 -14.03010 -13.90145 -13.40487 -13.12093 -12.76593 -12.59831 -12.29455 -12.25037 -12.12259 -11.91883 -11.51089 -11.35598 -11.26784 -11.00370 -10.98991 -10.89236 -10.81603 -10.66065 -10.44389 -10.34415 -10.18023 -10.09237 -9.90801 -9.77160 -9.42091 -9.04385 -8.64106 -8.31809 -7.83467 -5.95162 -3.97205 3.32685 3.40773 3.44636 4.48178 4.57562 4.65585 4.79067 4.94765 5.00509 5.21999 5.30832 5.34757 5.37406 5.49398 5.52160 5.61516 5.64072 5.71741 5.77103 5.77666 5.82141 5.84978 5.95939 5.99894 6.04880 6.09930 6.12806 6.17712 6.23360 6.30173 6.37014 6.47882 6.51876 6.59563 6.64482 6.77559 6.90005 6.96877 7.07470 7.28492 7.45107 7.67697 7.79763 7.86214 7.99252 8.09341 8.53782 9.06045 9.66397 11.14688 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.023960 B = 0.004317 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.356525 B = 6484.741057 C = 7045.754333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.111 4.111 4 C -0.128 4.128 5 H 0.074 0.926 6 C -0.151 4.151 7 C 0.094 3.906 8 H 0.073 0.927 9 C -0.119 4.119 10 C -0.143 4.143 11 N -0.676 5.676 12 C 0.079 3.921 13 H 0.052 0.948 14 C -0.111 4.111 15 C -0.098 4.098 16 C 0.052 3.948 17 H 0.027 0.973 18 C -0.511 4.511 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.887 3.113 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.124 4.124 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.338 0.662 43 H 0.058 0.942 44 H 0.039 0.961 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.258 0.742 48 H 0.041 0.959 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.116 3.239 6.556 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.149 4.149 4 C -0.148 4.148 5 H 0.092 0.908 6 C -0.209 4.209 7 C -0.016 4.016 8 H 0.091 0.909 9 C -0.157 4.157 10 C -0.200 4.200 11 N -0.306 5.306 12 C -0.030 4.030 13 H 0.070 0.930 14 C -0.149 4.149 15 C -0.137 4.137 16 C 0.033 3.967 17 H 0.045 0.955 18 C -0.549 4.549 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.529 5.529 22 Si 0.715 3.285 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.211 1.211 26 C -0.162 4.162 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.157 0.843 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.951 3.834 6.049 18.402 hybrid contribution 0.816 -1.165 0.405 1.479 sum -16.136 2.669 6.454 17.582 Atomic orbital electron populations 1.21776 0.96261 1.01308 1.01556 1.21596 0.95391 0.97386 1.02108 1.21659 0.95020 0.96446 1.01802 1.21926 0.95444 0.98764 0.98707 0.90752 1.21908 1.01497 1.00596 0.96876 1.21638 0.88853 0.93457 0.97685 0.90928 1.21669 0.99972 0.96969 0.97086 1.21672 1.03094 0.95332 0.99895 1.60788 1.05470 1.57863 1.06486 1.22528 0.94982 0.93160 0.92342 0.92984 1.22356 0.97597 0.98780 0.96161 1.22083 0.93749 0.98024 0.99826 1.19358 0.93790 0.93373 0.90187 0.95508 1.21207 0.93317 1.47610 0.92752 0.92760 1.24981 0.98586 0.95411 0.95040 1.69989 1.33643 1.49738 0.99485 0.86621 0.85480 0.77750 0.78647 1.19846 1.21169 1.21111 1.22881 0.95820 0.97092 1.00379 0.92896 0.93040 0.92978 0.92128 0.91940 0.92330 0.91780 0.92611 0.92214 0.92989 0.91437 0.92395 0.93962 0.93719 0.91121 0.84299 0.92358 0.94247 0.93253 0.93192 0.93259 0.94009 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.15 0.37 -0.88 16 2 C -0.13 -1.20 5.69 -26.74 -0.15 -1.36 16 3 C -0.11 -1.10 4.56 -26.73 -0.12 -1.22 16 4 C -0.13 -1.48 1.61 -90.62 -0.15 -1.63 16 5 H 0.07 1.01 6.33 -51.93 -0.33 0.68 16 6 C -0.15 -1.70 8.48 37.16 0.32 -1.39 16 7 C 0.09 1.16 2.10 -67.71 -0.14 1.02 16 8 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 9 C -0.12 -1.48 4.94 -26.73 -0.13 -1.61 16 10 C -0.14 -1.76 9.78 37.16 0.36 -1.40 16 11 N -0.68 -9.85 5.75 -97.90 -0.56 -10.42 16 12 C 0.08 1.37 2.09 -65.95 -0.14 1.23 16 13 H 0.05 0.92 5.12 -51.93 -0.27 0.65 16 14 C -0.11 -2.12 5.46 -25.51 -0.14 -2.26 16 15 C -0.10 -2.32 5.60 -25.61 -0.14 -2.47 16 16 C 0.05 1.29 2.73 -90.11 -0.25 1.05 16 17 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 18 C -0.51 -14.14 8.36 -34.44 -0.29 -14.43 16 19 H 0.05 1.49 7.77 -52.49 -0.41 1.08 16 20 C 0.06 1.72 5.35 -17.82 -0.10 1.62 16 21 N -0.89 -25.95 12.63 55.43 0.70 -25.25 16 22 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.12 -2.51 5.41 -24.74 -0.13 -2.64 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.59 6.56 -51.92 -0.34 0.25 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.63 6.23 -51.93 -0.32 0.31 16 34 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 35 H 0.06 0.75 6.29 -51.93 -0.33 0.42 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.96 5.48 -51.93 -0.28 0.68 16 38 H 0.06 0.64 6.19 -51.93 -0.32 0.32 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.00 6.70 -51.93 -0.35 0.65 16 42 H 0.34 4.79 6.43 -39.29 -0.25 4.54 16 43 H 0.06 1.11 7.45 -51.93 -0.39 0.72 16 44 H 0.04 0.72 7.28 -51.93 -0.38 0.34 16 45 H 0.05 1.25 7.83 -51.93 -0.41 0.84 16 46 H 0.05 1.26 8.06 -51.93 -0.42 0.84 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.04 0.81 7.96 -51.93 -0.41 0.40 16 49 H 0.06 1.26 7.99 -51.93 -0.42 0.85 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -27.68 357.26 -9.65 -37.33 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -9.32 Total: 2.78 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -0.83 Total: -26.36 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.14 Total: -35.67 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.68 -9.65 -37.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453296022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.113 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds