Wall clock time and date at job start Mon Mar 30 2020 07:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47531 * 2 1 4 4 C 1.53000 * 109.47732 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47197 * 54.99401 * 4 3 2 6 6 C 1.53005 * 109.46788 * 294.99966 * 4 3 2 7 7 C 1.52995 * 109.47210 * 174.99923 * 4 3 2 8 8 H 1.08999 * 109.47288 * 54.88059 * 7 4 3 9 9 C 1.52998 * 109.47085 * 294.87519 * 7 4 3 10 10 C 1.53001 * 109.47185 * 173.29259 * 9 7 4 11 11 N 1.46903 * 109.47106 * 174.88016 * 7 4 3 12 12 C 1.46899 * 110.99846 * 61.03025 * 11 7 4 13 13 H 1.09000 * 110.54216 * 343.49865 * 12 11 7 14 14 C 1.54461 * 110.66052 * 106.13310 * 12 11 7 15 15 C 1.53878 * 106.68672 * 142.05023 * 14 12 11 16 16 C 1.54264 * 106.59726 * 0.15636 * 15 14 12 17 17 H 1.09008 * 110.48287 * 95.06906 * 16 15 14 18 18 C 1.50703 * 110.48706 * 217.70887 * 16 15 14 19 19 H 1.08002 * 119.99678 * 114.77325 * 18 16 15 20 20 C 1.37876 * 120.00267 * 294.77863 * 18 16 15 21 21 N 1.31520 * 119.99801 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00153 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46963 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47364 * 119.99833 * 22 20 18 25 25 H 1.48497 * 109.47201 * 239.99913 * 22 20 18 26 26 C 1.54891 * 104.19729 * 336.39158 * 16 15 14 27 27 H 1.09006 * 109.47103 * 60.00716 * 1 2 3 28 28 H 1.09007 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47357 * 300.00346 * 1 2 3 30 30 H 1.09000 * 109.47357 * 239.99654 * 2 1 3 31 31 H 1.09007 * 109.47363 * 119.99762 * 2 1 3 32 32 H 1.09000 * 109.47083 * 59.99486 * 3 2 1 33 33 H 1.09005 * 109.46799 * 299.99479 * 3 2 1 34 34 H 1.08997 * 109.47196 * 59.99805 * 6 4 3 35 35 H 1.08997 * 109.46881 * 180.02562 * 6 4 3 36 36 H 1.08999 * 109.46790 * 299.99684 * 6 4 3 37 37 H 1.08992 * 109.47735 * 293.30031 * 9 7 4 38 38 H 1.09002 * 109.46889 * 53.30205 * 9 7 4 39 39 H 1.08997 * 109.47384 * 182.66057 * 10 9 7 40 40 H 1.08993 * 109.47381 * 302.66792 * 10 9 7 41 41 H 1.09006 * 109.46780 * 62.66611 * 10 9 7 42 42 H 1.00896 * 110.99626 * 297.07780 * 11 7 4 43 43 H 1.09004 * 109.86077 * 22.80785 * 14 12 11 44 44 H 1.09002 * 110.12071 * 261.43292 * 14 12 11 45 45 H 1.08998 * 110.03096 * 240.87112 * 15 14 12 46 46 H 1.09000 * 110.03521 * 119.44233 * 15 14 12 47 47 H 0.96999 * 119.99637 * 180.02562 * 21 20 18 48 48 H 1.08996 * 110.75348 * 156.25806 * 26 16 15 49 49 H 1.09004 * 110.75377 * 279.44147 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8408 6 6 4.0794 0.8331 1.3084 7 6 4.0800 2.8794 -0.1251 8 1 3.6434 3.4904 0.6650 9 6 3.6785 3.4456 -1.4886 10 6 4.0400 4.9310 -1.5505 11 7 5.5438 2.8921 -0.0015 12 6 6.1689 2.0970 -1.0669 13 1 5.4348 1.4422 -1.5363 14 6 6.8223 3.0171 -2.1216 15 6 8.1289 2.3312 -2.5576 16 6 8.2246 1.0160 -1.7571 17 1 7.8246 0.1854 -2.3388 18 6 9.6523 0.7435 -1.3589 19 1 9.9319 0.7465 -0.3157 20 6 10.6015 0.4905 -2.3263 21 7 10.2611 0.4875 -3.5967 22 14 12.3713 0.1535 -1.8328 23 1 12.4930 0.2143 -0.3540 24 1 12.7688 -1.1967 -2.3065 25 1 13.2590 1.1741 -2.4455 26 6 7.3511 1.2700 -0.5034 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9562 -0.8901 34 1 3.7160 -0.1906 1.3979 35 1 5.1694 0.8335 1.3090 36 1 3.7157 1.4227 2.1499 37 1 4.2091 2.9094 -2.2753 38 1 2.6041 3.3271 -1.6291 39 1 3.7113 5.3456 -2.5035 40 1 3.5465 5.4594 -0.7349 41 1 5.1199 5.0463 -1.4573 42 1 5.8325 2.5672 0.9090 43 1 7.0403 3.9897 -1.6804 44 1 6.1589 3.1355 -2.9783 45 1 8.9810 2.9709 -2.3279 46 1 8.0997 2.1168 -3.6259 47 1 10.9289 0.3091 -4.2773 48 1 6.9980 0.3290 -0.0816 49 1 7.9027 1.8428 0.2421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453296022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:28 Heat of formation + Delta-G solvation = -60.012140 kcal Electronic energy + Delta-G solvation = -21865.506537 eV Core-core repulsion = 19017.866725 eV Total energy + Delta-G solvation = -2847.639812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47537 -38.13396 -35.76344 -34.32726 -32.85771 -31.91299 -29.83950 -28.29698 -27.63436 -26.16743 -25.34737 -22.85568 -21.75351 -21.59748 -20.96389 -19.72665 -18.19606 -17.18716 -16.63224 -16.56095 -16.16475 -15.51582 -15.40031 -14.83026 -14.44941 -14.33862 -14.20440 -13.98939 -13.55613 -13.47771 -13.23965 -12.99349 -12.93294 -12.73905 -12.69887 -12.36430 -12.27313 -12.21597 -12.04668 -11.90876 -11.70637 -11.55996 -11.50793 -11.36281 -11.30934 -11.20037 -11.00854 -10.85116 -10.70774 -10.46658 -9.07252 -8.11300 -6.20746 1.39095 1.40728 1.52284 2.43544 3.19611 3.39032 3.77735 3.90826 4.02117 4.12353 4.18173 4.20129 4.34820 4.42329 4.46100 4.50243 4.61921 4.65449 4.73820 4.82631 4.85112 4.87763 4.94601 4.99407 5.02374 5.04360 5.13399 5.14175 5.16953 5.20780 5.21049 5.27119 5.32081 5.33052 5.38168 5.45547 5.49091 5.53254 5.55791 5.62247 5.66006 5.70797 5.93299 5.99999 6.37510 6.43425 6.67180 6.91270 7.46536 8.98074 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.023960 B = 0.004317 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.356525 B = 6484.741057 C = 7045.754333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.105 4.105 4 C -0.123 4.123 5 H 0.051 0.949 6 C -0.149 4.149 7 C 0.096 3.904 8 H 0.090 0.910 9 C -0.119 4.119 10 C -0.140 4.140 11 N -0.674 5.674 12 C 0.100 3.900 13 H 0.053 0.947 14 C -0.098 4.098 15 C -0.089 4.089 16 C 0.041 3.959 17 H -0.006 1.006 18 C -0.529 4.529 19 H 0.053 0.947 20 C 0.009 3.991 21 N -0.921 5.921 22 Si 0.952 3.048 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.111 4.111 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.343 0.657 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.024 0.976 46 H 0.022 0.978 47 H 0.259 0.741 48 H 0.048 0.952 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.544 3.884 8.142 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.143 4.143 4 C -0.143 4.143 5 H 0.070 0.930 6 C -0.207 4.207 7 C -0.014 4.014 8 H 0.108 0.892 9 C -0.156 4.156 10 C -0.197 4.197 11 N -0.305 5.305 12 C -0.009 4.009 13 H 0.071 0.929 14 C -0.136 4.136 15 C -0.128 4.128 16 C 0.022 3.978 17 H 0.012 0.988 18 C -0.567 4.567 19 H 0.071 0.929 20 C -0.189 4.189 21 N -0.561 5.561 22 Si 0.778 3.222 23 H -0.190 1.190 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.149 4.149 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.163 0.837 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.041 0.959 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.393 4.480 7.653 20.419 hybrid contribution 1.236 -1.378 -0.100 1.854 sum -17.156 3.102 7.553 19.000 Atomic orbital electron populations 1.21756 0.95157 1.01752 1.02028 1.21586 0.96367 0.97046 1.01527 1.21608 0.93442 0.96805 1.02450 1.21840 0.96776 0.97722 0.97984 0.93027 1.21885 1.00453 1.01128 0.97200 1.21720 0.87146 0.94236 0.98255 0.89243 1.21675 1.00901 0.96740 0.96310 1.21636 1.01802 0.95417 1.00863 1.60711 1.07110 1.56823 1.05824 1.22166 0.93943 0.92376 0.92447 0.92910 1.22216 0.95430 0.98756 0.97220 1.21887 0.95379 0.97489 0.98014 1.19354 0.93549 0.92701 0.92157 0.98772 1.21582 0.94871 1.47518 0.92741 0.92920 1.25787 1.02824 0.95287 0.95011 1.70117 1.34960 1.50570 1.00453 0.85588 0.80322 0.77628 0.78636 1.18978 1.20658 1.20732 1.22701 0.96060 0.98014 0.98172 0.92699 0.92693 0.92207 0.93309 0.91996 0.91133 0.91559 0.92331 0.93757 0.91500 0.93534 0.90529 0.93336 0.92367 0.93168 0.83670 0.91807 0.93161 0.95656 0.95868 0.93227 0.93306 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.13 -2.18 5.69 30.59 0.17 -2.01 16 3 C -0.11 -1.80 4.56 30.59 0.14 -1.66 16 4 C -0.12 -2.60 1.61 -10.79 -0.02 -2.62 16 5 H 0.05 1.35 6.33 -2.39 -0.02 1.33 16 6 C -0.15 -3.06 8.48 71.98 0.61 -2.45 16 7 C 0.10 2.14 2.10 44.91 0.09 2.23 16 8 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 9 C -0.12 -2.69 4.94 30.59 0.15 -2.53 16 10 C -0.14 -3.14 9.78 71.98 0.70 -2.43 16 11 N -0.67 -18.51 5.75 -463.65 -2.67 -21.18 16 12 C 0.10 3.43 2.09 46.06 0.10 3.53 16 13 H 0.05 1.84 5.12 -2.39 -0.01 1.83 16 14 C -0.10 -3.76 5.46 31.39 0.17 -3.59 16 15 C -0.09 -4.37 5.60 31.32 0.18 -4.19 16 16 C 0.04 2.13 2.73 -10.46 -0.03 2.10 16 17 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 18 C -0.53 -29.97 8.36 25.60 0.21 -29.75 16 19 H 0.05 2.93 7.77 -2.91 -0.02 2.90 16 20 C 0.01 0.53 5.35 84.65 0.45 0.98 16 21 N -0.92 -55.31 12.63 21.45 0.27 -55.04 16 22 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 C -0.11 -4.53 5.41 31.89 0.17 -4.36 16 27 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.06 6.56 -2.38 -0.02 1.04 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.12 6.23 -2.38 -0.01 1.10 16 34 H 0.06 1.16 6.56 -2.39 -0.02 1.15 16 35 H 0.04 1.04 6.29 -2.39 -0.02 1.03 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.26 5.48 -2.39 -0.01 1.25 16 38 H 0.08 1.46 6.19 -2.39 -0.01 1.45 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.33 6.70 -2.38 -0.02 1.32 16 42 H 0.34 9.06 6.43 -89.70 -0.58 8.48 16 43 H 0.06 2.39 7.45 -2.39 -0.02 2.37 16 44 H 0.05 1.82 7.28 -2.39 -0.02 1.80 16 45 H 0.02 1.31 7.83 -2.39 -0.02 1.30 16 46 H 0.02 1.21 8.06 -2.39 -0.02 1.19 16 47 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 48 H 0.05 1.90 7.96 -2.39 -0.02 1.88 16 49 H 0.06 2.41 7.99 -2.38 -0.02 2.39 16 Total: -1.00 -60.55 357.26 3.77 -56.79 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.31 Total: 20.84 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 3.82 Total: -48.18 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -2.40 Total: -76.22 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -60.55 3.77 -56.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453296022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.226 kcal (2) G-P(sol) polarization free energy of solvation -60.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds