Wall clock time and date at job start Mon Mar 30 2020 07:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46640 * 2 1 4 4 C 1.53000 * 109.46849 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47167 * 305.00370 * 4 3 2 6 6 C 1.53002 * 109.47465 * 64.99675 * 4 3 2 7 7 C 1.53001 * 109.47522 * 184.99945 * 4 3 2 8 8 H 1.09005 * 109.46668 * 301.17613 * 7 4 3 9 9 C 1.53003 * 109.47065 * 61.16908 * 7 4 3 10 10 C 1.53000 * 109.46954 * 186.00839 * 9 7 4 11 11 N 1.46894 * 109.47369 * 181.17563 * 7 4 3 12 12 C 1.46896 * 111.00592 * 97.41177 * 11 7 4 13 13 H 1.09005 * 110.01151 * 332.42854 * 12 11 7 14 14 C 1.53872 * 110.03522 * 93.81573 * 12 11 7 15 15 C 1.54264 * 106.59827 * 119.28508 * 14 12 11 16 16 C 1.54893 * 104.19550 * 23.61119 * 15 14 12 17 17 H 1.09008 * 110.75511 * 80.37170 * 16 15 14 18 18 C 1.50693 * 110.76133 * 203.73951 * 16 15 14 19 19 H 1.07999 * 120.00087 * 118.54647 * 18 16 15 20 20 C 1.37883 * 120.00011 * 298.54941 * 18 16 15 21 21 N 1.31512 * 119.99887 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99989 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47407 * 60.00036 * 22 20 18 24 24 H 1.48498 * 109.47244 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47150 * 300.00090 * 22 20 18 26 26 C 1.54262 * 110.03348 * 210.98809 * 12 11 7 27 27 H 1.09004 * 109.47087 * 299.99573 * 1 2 3 28 28 H 1.09005 * 109.46814 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47620 * 60.00087 * 1 2 3 30 30 H 1.09000 * 109.46943 * 119.99933 * 2 1 3 31 31 H 1.08997 * 109.46662 * 239.99944 * 2 1 3 32 32 H 1.09000 * 109.47398 * 299.99655 * 3 2 1 33 33 H 1.08997 * 109.47639 * 60.00542 * 3 2 1 34 34 H 1.08998 * 109.47806 * 179.23439 * 6 4 3 35 35 H 1.09005 * 109.47347 * 299.24222 * 6 4 3 36 36 H 1.09002 * 109.46742 * 59.23015 * 6 4 3 37 37 H 1.09001 * 109.46966 * 306.01318 * 9 7 4 38 38 H 1.08995 * 109.46637 * 66.00409 * 9 7 4 39 39 H 1.08993 * 109.47100 * 304.46183 * 10 9 7 40 40 H 1.08999 * 109.47242 * 64.46506 * 10 9 7 41 41 H 1.09003 * 109.46675 * 184.46771 * 10 9 7 42 42 H 1.00903 * 110.99897 * 221.36586 * 11 7 4 43 43 H 1.08993 * 110.03783 * 238.57391 * 14 12 11 44 44 H 1.08999 * 110.03010 * 0.02562 * 14 12 11 45 45 H 1.09000 * 110.48810 * 142.28902 * 15 14 12 46 46 H 1.09002 * 110.49309 * 264.93708 * 15 14 12 47 47 H 0.96996 * 119.99765 * 179.97438 * 21 20 18 48 48 H 1.08994 * 110.48809 * 335.77902 * 26 12 11 49 49 H 1.09004 * 110.48688 * 98.42676 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0795 0.8331 -1.3082 7 6 4.0800 2.8796 0.1251 8 1 3.6992 3.4742 -0.7054 9 6 3.5948 3.4792 1.4464 10 6 3.9765 4.9597 1.5052 11 7 5.5487 2.8822 0.0961 12 6 6.0483 3.1872 -1.2512 13 1 5.3201 2.8730 -1.9990 14 6 6.3219 4.6956 -1.3830 15 6 7.8248 4.8451 -1.6972 16 6 8.2190 3.4845 -2.3237 17 1 7.9309 3.4449 -3.3742 18 6 9.6957 3.2306 -2.1635 19 1 10.0387 2.3762 -1.5988 20 6 10.6091 4.0890 -2.7380 21 7 10.1916 5.1291 -3.4260 22 14 12.4397 3.7746 -2.5389 23 1 12.7802 2.4497 -3.1166 24 1 13.2036 4.8342 -3.2453 25 1 12.7906 3.7905 -1.0960 26 6 7.3944 2.4726 -1.4899 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 5.1694 0.8455 -1.3146 35 1 3.7273 -0.1951 -1.3914 36 1 3.7045 1.4146 -2.1505 37 1 2.5114 3.3803 1.5141 38 1 4.0605 2.9506 2.2780 39 1 5.0514 5.0639 1.3580 40 1 3.4482 5.5025 0.7214 41 1 3.7017 5.3673 2.4781 42 1 5.9226 3.5281 0.7752 43 1 5.7272 5.1134 -2.1953 44 1 6.0843 5.2013 -0.4471 45 1 7.9870 5.6542 -2.4093 46 1 8.3902 5.0218 -0.7822 47 1 10.8341 5.7331 -3.8298 48 1 7.8903 2.2662 -0.5415 49 1 7.2425 1.5503 -2.0508 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453296025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:31 Heat of formation + Delta-G solvation = -47.229340 kcal Electronic energy + Delta-G solvation = -21642.483366 eV Core-core repulsion = 18795.397857 eV Total energy + Delta-G solvation = -2847.085508 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.02699 -36.83461 -34.77682 -32.62593 -31.74089 -30.69776 -27.98775 -27.03902 -26.38553 -25.03288 -23.37911 -22.02124 -20.93739 -19.84237 -19.26511 -18.90682 -16.33769 -15.86102 -15.27007 -14.93957 -14.49925 -14.25390 -14.06734 -13.88934 -13.43780 -13.39599 -12.76855 -12.51659 -12.36719 -12.31791 -12.13583 -11.81080 -11.64808 -11.38420 -11.35925 -11.02670 -10.95487 -10.86548 -10.74669 -10.61595 -10.53127 -10.38416 -10.32401 -10.12990 -9.90382 -9.63878 -9.41191 -9.00556 -8.71027 -8.30180 -7.82379 -5.93663 -3.95991 3.36184 3.40461 3.43531 4.42116 4.51080 4.78432 4.86224 4.90874 5.07326 5.15463 5.16236 5.31625 5.37879 5.49621 5.54640 5.59213 5.65381 5.68717 5.72602 5.76860 5.80461 5.88548 5.90855 5.95571 5.98963 6.04400 6.13015 6.17814 6.21189 6.27217 6.34303 6.37558 6.54233 6.62054 6.68253 6.79324 6.83707 6.94351 7.16170 7.24803 7.42457 7.71005 7.79338 7.89803 8.00030 8.12472 8.55025 9.06615 9.67616 11.15477 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.003914 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.795096 B = 7152.898167 C = 7671.632310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.076 4.076 5 H 0.071 0.929 6 C -0.147 4.147 7 C 0.091 3.909 8 H 0.045 0.955 9 C -0.133 4.133 10 C -0.158 4.158 11 N -0.678 5.678 12 C 0.083 3.917 13 H 0.066 0.934 14 C -0.154 4.154 15 C -0.097 4.097 16 C 0.048 3.952 17 H 0.025 0.975 18 C -0.510 4.510 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.278 1.278 26 C -0.101 4.101 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.339 0.661 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.258 0.742 48 H 0.061 0.939 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.197 -4.773 7.907 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.095 4.095 5 H 0.089 0.911 6 C -0.204 4.204 7 C -0.020 4.020 8 H 0.064 0.936 9 C -0.171 4.171 10 C -0.215 4.215 11 N -0.310 5.310 12 C -0.026 4.026 13 H 0.084 0.916 14 C -0.193 4.193 15 C -0.135 4.135 16 C 0.029 3.971 17 H 0.044 0.956 18 C -0.548 4.548 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.716 3.284 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.204 1.204 26 C -0.139 4.139 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.159 0.841 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.080 -5.291 7.725 19.478 hybrid contribution 0.813 0.985 -0.027 1.278 sum -16.267 -4.305 7.698 18.504 Atomic orbital electron populations 1.21785 0.96368 1.01248 1.01555 1.21566 0.95246 0.97336 1.02102 1.21769 0.95773 0.96439 1.01658 1.21112 0.93337 0.96170 0.98901 0.91062 1.21911 1.02908 0.99310 0.96312 1.21584 0.89054 0.95148 0.96173 0.93648 1.21881 1.01238 0.95780 0.98229 1.21875 1.01957 0.96318 1.01369 1.60714 1.05697 1.57321 1.07286 1.22459 0.97547 0.93954 0.88688 0.91570 1.22998 1.00614 0.96298 0.99403 1.22233 0.89944 1.01445 0.99917 1.19571 0.93768 0.89727 0.93990 0.95640 1.21118 0.90887 1.10138 1.32655 0.92747 1.24981 0.98577 0.95261 0.95177 1.69954 1.33924 1.14403 1.34780 0.86725 0.85702 0.77751 0.78186 1.20345 1.21457 1.20360 1.22444 0.93361 0.97831 1.00296 0.93006 0.93074 0.92924 0.92218 0.91786 0.92409 0.91996 0.90761 0.93517 0.93717 0.91390 0.91421 0.92283 0.92929 0.92821 0.84079 0.93544 0.93680 0.91713 0.93683 0.93188 0.92025 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.13 5.69 -26.73 -0.15 -1.29 16 3 C -0.12 -1.17 4.50 -26.73 -0.12 -1.29 16 4 C -0.08 -0.89 2.16 -90.62 -0.20 -1.09 16 5 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 6 C -0.15 -1.89 7.65 37.16 0.28 -1.61 16 7 C 0.09 1.14 1.73 -67.71 -0.12 1.02 16 8 H 0.05 0.62 7.53 -51.93 -0.39 0.23 16 9 C -0.13 -1.44 5.24 -26.73 -0.14 -1.58 16 10 C -0.16 -1.71 9.82 37.16 0.36 -1.34 16 11 N -0.68 -10.21 5.71 -98.57 -0.56 -10.77 16 12 C 0.08 1.46 1.94 -66.60 -0.13 1.33 16 13 H 0.07 1.15 6.03 -51.93 -0.31 0.84 16 14 C -0.15 -2.89 6.48 -25.62 -0.17 -3.06 16 15 C -0.10 -2.27 5.57 -25.07 -0.14 -2.41 16 16 C 0.05 1.21 2.82 -89.78 -0.25 0.95 16 17 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 18 C -0.51 -14.17 8.54 -34.44 -0.29 -14.47 16 19 H 0.05 1.50 7.78 -52.49 -0.41 1.09 16 20 C 0.06 1.72 5.33 -17.82 -0.10 1.62 16 21 N -0.89 -25.90 12.02 55.43 0.67 -25.24 16 22 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 C -0.10 -2.12 5.67 -25.07 -0.14 -2.26 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 6.58 -51.93 -0.34 0.26 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.57 6.09 -51.93 -0.32 0.26 16 34 H 0.07 1.12 6.02 -51.93 -0.31 0.81 16 35 H 0.05 0.54 6.60 -51.93 -0.34 0.20 16 36 H 0.04 0.58 7.80 -51.93 -0.40 0.17 16 37 H 0.07 0.65 6.06 -51.93 -0.31 0.34 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.71 5.39 -51.93 -0.28 0.43 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.34 5.12 5.83 -39.29 -0.23 4.89 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.77 6.32 -51.93 -0.33 0.44 16 45 H 0.06 1.66 7.37 -51.93 -0.38 1.28 16 46 H 0.04 1.10 8.04 -51.93 -0.42 0.68 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.06 1.34 7.95 -51.93 -0.41 0.93 16 49 H 0.04 0.88 7.88 -51.93 -0.41 0.47 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -27.55 358.79 -9.83 -37.38 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -9.39 Total: 2.94 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -0.93 Total: -26.30 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.10 Total: -36.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.55 -9.83 -37.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453296025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.852 kcal (2) G-P(sol) polarization free energy of solvation -27.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds