Wall clock time and date at job start Mon Mar 30 2020 07:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46640 * 2 1 4 4 C 1.53000 * 109.46849 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47167 * 305.00370 * 4 3 2 6 6 C 1.53002 * 109.47465 * 64.99675 * 4 3 2 7 7 C 1.53001 * 109.47522 * 184.99945 * 4 3 2 8 8 H 1.09005 * 109.46668 * 301.17613 * 7 4 3 9 9 C 1.53003 * 109.47065 * 61.16908 * 7 4 3 10 10 C 1.53000 * 109.46954 * 186.00839 * 9 7 4 11 11 N 1.46894 * 109.47369 * 181.17563 * 7 4 3 12 12 C 1.46896 * 111.00592 * 97.41177 * 11 7 4 13 13 H 1.09005 * 110.01151 * 332.42854 * 12 11 7 14 14 C 1.53872 * 110.03522 * 93.81573 * 12 11 7 15 15 C 1.54264 * 106.59827 * 119.28508 * 14 12 11 16 16 C 1.54893 * 104.19550 * 23.61119 * 15 14 12 17 17 H 1.09008 * 110.75511 * 80.37170 * 16 15 14 18 18 C 1.50693 * 110.76133 * 203.73951 * 16 15 14 19 19 H 1.07999 * 120.00087 * 118.54647 * 18 16 15 20 20 C 1.37883 * 120.00011 * 298.54941 * 18 16 15 21 21 N 1.31512 * 119.99887 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99989 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47407 * 60.00036 * 22 20 18 24 24 H 1.48498 * 109.47244 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47150 * 300.00090 * 22 20 18 26 26 C 1.54262 * 110.03348 * 210.98809 * 12 11 7 27 27 H 1.09004 * 109.47087 * 299.99573 * 1 2 3 28 28 H 1.09005 * 109.46814 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47620 * 60.00087 * 1 2 3 30 30 H 1.09000 * 109.46943 * 119.99933 * 2 1 3 31 31 H 1.08997 * 109.46662 * 239.99944 * 2 1 3 32 32 H 1.09000 * 109.47398 * 299.99655 * 3 2 1 33 33 H 1.08997 * 109.47639 * 60.00542 * 3 2 1 34 34 H 1.08998 * 109.47806 * 179.23439 * 6 4 3 35 35 H 1.09005 * 109.47347 * 299.24222 * 6 4 3 36 36 H 1.09002 * 109.46742 * 59.23015 * 6 4 3 37 37 H 1.09001 * 109.46966 * 306.01318 * 9 7 4 38 38 H 1.08995 * 109.46637 * 66.00409 * 9 7 4 39 39 H 1.08993 * 109.47100 * 304.46183 * 10 9 7 40 40 H 1.08999 * 109.47242 * 64.46506 * 10 9 7 41 41 H 1.09003 * 109.46675 * 184.46771 * 10 9 7 42 42 H 1.00903 * 110.99897 * 221.36586 * 11 7 4 43 43 H 1.08993 * 110.03783 * 238.57391 * 14 12 11 44 44 H 1.08999 * 110.03010 * 0.02562 * 14 12 11 45 45 H 1.09000 * 110.48810 * 142.28902 * 15 14 12 46 46 H 1.09002 * 110.49309 * 264.93708 * 15 14 12 47 47 H 0.96996 * 119.99765 * 179.97438 * 21 20 18 48 48 H 1.08994 * 110.48809 * 335.77902 * 26 12 11 49 49 H 1.09004 * 110.48688 * 98.42676 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0795 0.8331 -1.3082 7 6 4.0800 2.8796 0.1251 8 1 3.6992 3.4742 -0.7054 9 6 3.5948 3.4792 1.4464 10 6 3.9765 4.9597 1.5052 11 7 5.5487 2.8822 0.0961 12 6 6.0483 3.1872 -1.2512 13 1 5.3201 2.8730 -1.9990 14 6 6.3219 4.6956 -1.3830 15 6 7.8248 4.8451 -1.6972 16 6 8.2190 3.4845 -2.3237 17 1 7.9309 3.4449 -3.3742 18 6 9.6957 3.2306 -2.1635 19 1 10.0387 2.3762 -1.5988 20 6 10.6091 4.0890 -2.7380 21 7 10.1916 5.1291 -3.4260 22 14 12.4397 3.7746 -2.5389 23 1 12.7802 2.4497 -3.1166 24 1 13.2036 4.8342 -3.2453 25 1 12.7906 3.7905 -1.0960 26 6 7.3944 2.4726 -1.4899 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 5.1694 0.8455 -1.3146 35 1 3.7273 -0.1951 -1.3914 36 1 3.7045 1.4146 -2.1505 37 1 2.5114 3.3803 1.5141 38 1 4.0605 2.9506 2.2780 39 1 5.0514 5.0639 1.3580 40 1 3.4482 5.5025 0.7214 41 1 3.7017 5.3673 2.4781 42 1 5.9226 3.5281 0.7752 43 1 5.7272 5.1134 -2.1953 44 1 6.0843 5.2013 -0.4471 45 1 7.9870 5.6542 -2.4093 46 1 8.3902 5.0218 -0.7822 47 1 10.8341 5.7331 -3.8298 48 1 7.8903 2.2662 -0.5415 49 1 7.2425 1.5503 -2.0508 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453296025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:30 Heat of formation + Delta-G solvation = -60.471386 kcal Electronic energy + Delta-G solvation = -21643.057584 eV Core-core repulsion = 18795.397857 eV Total energy + Delta-G solvation = -2847.659727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25427 -38.23521 -35.84710 -34.46561 -32.66954 -32.06284 -29.79085 -28.40093 -27.44610 -26.34579 -25.10791 -22.83079 -21.82712 -21.15473 -20.96667 -20.33074 -18.38511 -17.08323 -16.58518 -16.11710 -16.08033 -15.58752 -15.21642 -14.90452 -14.70628 -14.33704 -14.17682 -13.94874 -13.54003 -13.53624 -13.35302 -12.98500 -12.93797 -12.75842 -12.64205 -12.45180 -12.35288 -12.27623 -12.01271 -11.87972 -11.73823 -11.49364 -11.47900 -11.39260 -11.33391 -11.10454 -10.99575 -10.79649 -10.75934 -10.44212 -9.10125 -8.09526 -6.19513 1.41130 1.42578 1.50159 2.44349 3.20133 3.30726 3.86165 3.96893 4.02402 4.11775 4.14935 4.27105 4.30644 4.34721 4.38682 4.52252 4.62998 4.69794 4.76193 4.77942 4.83498 4.88783 4.96754 5.01183 5.04980 5.07535 5.09763 5.10185 5.16701 5.20191 5.23344 5.25807 5.30120 5.36568 5.39070 5.43360 5.45774 5.49769 5.53993 5.65557 5.67607 5.69298 5.95693 6.03317 6.38933 6.43981 6.67359 6.90903 7.47624 8.98345 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.003914 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.795096 B = 7152.898167 C = 7671.632310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.071 4.071 5 H 0.067 0.933 6 C -0.145 4.145 7 C 0.091 3.909 8 H 0.039 0.961 9 C -0.127 4.127 10 C -0.157 4.157 11 N -0.678 5.678 12 C 0.101 3.899 13 H 0.072 0.928 14 C -0.142 4.142 15 C -0.088 4.088 16 C 0.038 3.962 17 H -0.005 1.005 18 C -0.531 4.531 19 H 0.051 0.949 20 C 0.011 3.989 21 N -0.920 5.920 22 Si 0.952 3.048 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.271 1.271 26 C -0.090 4.090 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.340 0.660 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.029 0.971 47 H 0.259 0.741 48 H 0.053 0.947 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.609 -5.261 9.328 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.090 4.090 5 H 0.085 0.915 6 C -0.203 4.203 7 C -0.019 4.019 8 H 0.057 0.943 9 C -0.164 4.164 10 C -0.215 4.215 11 N -0.310 5.310 12 C -0.009 4.009 13 H 0.090 0.910 14 C -0.181 4.181 15 C -0.127 4.127 16 C 0.019 3.981 17 H 0.013 0.987 18 C -0.569 4.569 19 H 0.069 0.931 20 C -0.187 4.187 21 N -0.559 5.559 22 Si 0.778 3.222 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.128 4.128 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.161 0.839 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.505 -5.789 9.159 21.444 hybrid contribution 1.248 1.114 -0.489 1.743 sum -17.257 -4.675 8.669 19.870 Atomic orbital electron populations 1.21768 0.95387 1.01784 1.01862 1.21553 0.96106 0.96675 1.01873 1.21710 0.94024 0.97139 1.02096 1.21072 0.94761 0.95274 0.97935 0.91467 1.21875 1.01231 1.00176 0.96976 1.21665 0.87153 0.95866 0.97226 0.94284 1.21837 1.02255 0.95506 0.96840 1.21869 1.00956 0.96421 1.02235 1.60630 1.07581 1.57209 1.05577 1.22140 0.95926 0.92372 0.90500 0.90967 1.22896 0.96983 0.97572 1.00664 1.22002 0.93204 0.99401 0.98079 1.19567 0.93387 0.92138 0.93010 0.98716 1.21491 0.92642 1.10092 1.32681 0.93118 1.25765 1.03040 0.95038 0.94888 1.70088 1.35257 1.15120 1.35465 0.85708 0.80342 0.77798 0.78392 1.19674 1.21010 1.19629 1.22259 0.94537 0.97099 0.98930 0.92390 0.92494 0.92926 0.92098 0.92411 0.92598 0.90861 0.93200 0.92459 0.94031 0.89621 0.91271 0.93689 0.93014 0.91357 0.83895 0.92951 0.91524 0.94698 0.95220 0.93218 0.92855 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.31 16 2 C -0.12 -1.98 5.69 30.60 0.17 -1.80 16 3 C -0.11 -1.92 4.50 30.59 0.14 -1.78 16 4 C -0.07 -1.53 2.16 -10.79 -0.02 -1.56 16 5 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 6 C -0.15 -3.58 7.65 71.98 0.55 -3.03 16 7 C 0.09 2.10 1.73 44.92 0.08 2.17 16 8 H 0.04 0.98 7.53 -2.38 -0.02 0.97 16 9 C -0.13 -2.37 5.24 30.60 0.16 -2.21 16 10 C -0.16 -3.01 9.82 71.98 0.71 -2.30 16 11 N -0.68 -19.51 5.71 -465.78 -2.66 -22.17 16 12 C 0.10 3.49 1.94 45.64 0.09 3.58 16 13 H 0.07 2.45 6.03 -2.38 -0.01 2.44 16 14 C -0.14 -5.26 6.48 31.32 0.20 -5.06 16 15 C -0.09 -4.26 5.57 31.67 0.18 -4.08 16 16 C 0.04 1.95 2.82 -10.25 -0.03 1.93 16 17 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 18 C -0.53 -30.26 8.54 25.60 0.22 -30.04 16 19 H 0.05 2.85 7.78 -2.91 -0.02 2.82 16 20 C 0.01 0.64 5.33 84.66 0.45 1.09 16 21 N -0.92 -54.79 12.02 21.45 0.26 -54.53 16 22 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 C -0.09 -3.82 5.67 31.67 0.18 -3.64 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.99 6.58 -2.39 -0.02 0.97 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.11 6.09 -2.39 -0.01 1.09 16 34 H 0.05 1.47 6.02 -2.39 -0.01 1.45 16 35 H 0.06 1.26 6.60 -2.38 -0.02 1.25 16 36 H 0.04 1.03 7.80 -2.39 -0.02 1.01 16 37 H 0.09 1.34 6.06 -2.39 -0.01 1.32 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.04 0.98 5.39 -2.39 -0.01 0.97 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.34 9.75 5.83 -89.69 -0.52 9.23 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.07 2.19 6.32 -2.39 -0.02 2.17 16 45 H 0.03 1.85 7.37 -2.39 -0.02 1.83 16 46 H 0.03 1.47 8.04 -2.39 -0.02 1.45 16 47 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 48 H 0.05 2.33 7.95 -2.39 -0.02 2.31 16 49 H 0.04 1.83 7.88 -2.39 -0.02 1.81 16 Total: -1.00 -60.08 358.79 3.77 -56.31 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.36 Total: 21.66 kcal Atomic # 6 Polarization: -51.84 SS G_CDS: 3.79 Total: -48.05 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -2.40 Total: -76.70 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -60.08 3.77 -56.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453296025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.159 kcal (2) G-P(sol) polarization free energy of solvation -60.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds