Wall clock time and date at job start Mon Mar 30 2020 07:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46934 * 2 1 4 4 C 1.53009 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46652 * 55.00155 * 4 3 2 6 6 C 1.52998 * 109.46888 * 295.00345 * 4 3 2 7 7 C 1.53002 * 109.47023 * 174.99839 * 4 3 2 8 8 H 1.09001 * 109.47077 * 305.00233 * 7 4 3 9 9 C 1.53003 * 109.46680 * 65.00169 * 7 4 3 10 10 C 1.52998 * 109.46679 * 185.79050 * 9 7 4 11 11 N 1.46903 * 109.46854 * 185.00051 * 7 4 3 12 12 C 1.46896 * 110.99580 * 85.00788 * 11 7 4 13 13 H 1.08997 * 110.05914 * 325.14821 * 12 11 7 14 14 C 1.53876 * 110.03192 * 86.56942 * 12 11 7 15 15 C 1.54265 * 106.59842 * 119.28189 * 14 12 11 16 16 C 1.54896 * 104.19783 * 23.60691 * 15 14 12 17 17 H 1.09004 * 110.75083 * 80.37420 * 16 15 14 18 18 C 1.50705 * 110.75611 * 203.74153 * 16 15 14 19 19 H 1.07998 * 119.99614 * 113.32933 * 18 16 15 20 20 C 1.37878 * 120.00132 * 293.33068 * 18 16 15 21 21 N 1.31512 * 119.99787 * 0.02562 * 20 18 16 22 22 Si 1.86791 * 119.99668 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47637 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47142 * 119.99826 * 22 20 18 25 25 H 1.48505 * 109.47277 * 239.99879 * 22 20 18 26 26 C 1.54273 * 110.02683 * 203.73223 * 12 11 7 27 27 H 1.09001 * 109.47492 * 299.99859 * 1 2 3 28 28 H 1.09002 * 109.47133 * 60.00359 * 1 2 3 29 29 H 1.09001 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47492 * 240.00140 * 2 1 3 31 31 H 1.09003 * 109.46854 * 120.00112 * 2 1 3 32 32 H 1.09005 * 109.47374 * 59.99931 * 3 2 1 33 33 H 1.09003 * 109.47442 * 299.99752 * 3 2 1 34 34 H 1.09004 * 109.46672 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.47147 * 299.99177 * 6 4 3 36 36 H 1.08996 * 109.47339 * 59.99599 * 6 4 3 37 37 H 1.08994 * 109.47415 * 305.78790 * 9 7 4 38 38 H 1.09004 * 109.46725 * 65.79390 * 9 7 4 39 39 H 1.08998 * 109.47223 * 173.90858 * 10 9 7 40 40 H 1.09004 * 109.47564 * 293.91000 * 10 9 7 41 41 H 1.08996 * 109.47157 * 53.90782 * 10 9 7 42 42 H 1.00896 * 110.99817 * 208.96386 * 11 7 4 43 43 H 1.08999 * 110.02965 * 238.56418 * 14 12 11 44 44 H 1.08995 * 110.03368 * 359.97438 * 14 12 11 45 45 H 1.09006 * 110.48873 * 264.93034 * 15 14 12 46 46 H 1.08993 * 110.48978 * 142.28809 * 15 14 12 47 47 H 0.96997 * 119.99764 * 180.02562 * 21 20 18 48 48 H 1.09005 * 110.48484 * 98.43215 * 26 12 11 49 49 H 1.08991 * 110.60041 * 335.84129 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0794 0.8330 1.3083 7 6 4.0800 2.8796 -0.1251 8 1 3.6457 3.3430 -1.0110 9 6 3.6747 3.6750 1.1174 10 6 4.0570 5.1445 0.9292 11 7 5.5441 2.8707 -0.2449 12 6 5.9568 2.6691 -1.6402 13 1 5.2590 2.0000 -2.1435 14 6 6.0134 4.0206 -2.3737 15 6 7.4710 4.2064 -2.8435 16 6 8.0329 2.7648 -2.9177 17 1 7.7227 2.2765 -3.8415 18 6 9.5347 2.7699 -2.7927 19 1 10.0058 2.3311 -1.9256 20 6 10.3072 3.3347 -3.7853 21 7 9.7334 3.8695 -4.8409 22 14 12.1687 3.3403 -3.6306 23 1 12.5618 2.6814 -2.3591 24 1 12.7627 2.6022 -4.7742 25 1 12.6617 4.7411 -3.6358 26 6 7.3821 2.0808 -1.6898 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 5.1694 0.8326 1.3085 35 1 3.7158 1.4226 2.1498 36 1 3.7160 -0.1907 1.3978 37 1 2.5976 3.5959 1.2642 38 1 4.1908 3.2741 1.9898 39 1 3.6729 5.7297 1.7647 40 1 5.1426 5.2355 0.8907 41 1 3.6282 5.5152 -0.0017 42 1 5.9428 3.7178 0.1314 43 1 5.3430 4.0074 -3.2330 44 1 5.7342 4.8261 -1.6945 45 1 8.0325 4.7979 -2.1203 46 1 7.4980 4.6774 -3.8260 47 1 10.2769 4.2665 -5.5394 48 1 7.3442 1.0005 -1.8306 49 1 7.9305 2.3271 -0.7807 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453296031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:35 Heat of formation + Delta-G solvation = -49.780252 kcal Electronic energy + Delta-G solvation = -21560.810800 eV Core-core repulsion = 18713.614675 eV Total energy + Delta-G solvation = -2847.196124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.01136 -36.94162 -34.74204 -32.66733 -31.43071 -30.85339 -27.97559 -26.70796 -26.64730 -24.97338 -23.44799 -22.59552 -21.20603 -19.42525 -19.12563 -18.52052 -16.35323 -15.79635 -15.41857 -14.93176 -14.74086 -14.47804 -14.12150 -13.77127 -13.38559 -13.31402 -12.93012 -12.43713 -12.35929 -12.30307 -12.02429 -11.80547 -11.68920 -11.43475 -11.37990 -11.12945 -11.04051 -10.95314 -10.69483 -10.54215 -10.50458 -10.40474 -10.22682 -10.13643 -9.91390 -9.69418 -9.49077 -9.01173 -8.72410 -8.31404 -7.83853 -5.95110 -3.96868 3.32968 3.41036 3.45492 4.43368 4.50999 4.78228 4.81885 4.96269 5.07115 5.14960 5.17843 5.30966 5.36746 5.45523 5.54202 5.61438 5.62969 5.68296 5.73473 5.78210 5.84443 5.88168 5.90492 5.92875 5.95301 6.00140 6.14862 6.16645 6.19217 6.29958 6.34436 6.38158 6.53492 6.57877 6.62202 6.77239 6.82251 6.92415 7.13275 7.21690 7.39799 7.68155 7.76147 7.88893 7.97353 8.10556 8.54248 9.06773 9.66871 11.14713 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.003847 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.059309 B = 7275.869396 C = 7591.889369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.079 4.079 5 H 0.068 0.932 6 C -0.138 4.138 7 C 0.091 3.909 8 H 0.039 0.961 9 C -0.128 4.128 10 C -0.157 4.157 11 N -0.677 5.677 12 C 0.085 3.915 13 H 0.064 0.936 14 C -0.153 4.153 15 C -0.100 4.100 16 C 0.048 3.952 17 H 0.030 0.970 18 C -0.508 4.508 19 H 0.055 0.945 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.887 3.113 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.286 1.286 26 C -0.101 4.101 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.339 0.661 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.061 0.939 47 H 0.257 0.743 48 H 0.044 0.956 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.325 -2.470 10.797 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.098 4.098 5 H 0.087 0.913 6 C -0.196 4.196 7 C -0.019 4.019 8 H 0.057 0.943 9 C -0.165 4.165 10 C -0.215 4.215 11 N -0.309 5.309 12 C -0.025 4.025 13 H 0.082 0.918 14 C -0.192 4.192 15 C -0.138 4.138 16 C 0.029 3.971 17 H 0.048 0.952 18 C -0.546 4.546 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.716 3.284 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.139 4.139 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.159 0.841 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.224 -3.040 10.809 19.731 hybrid contribution 0.771 1.048 -0.536 1.407 sum -15.454 -1.992 10.273 18.663 Atomic orbital electron populations 1.21781 0.96334 1.01272 1.01557 1.21573 0.95289 0.97305 1.02134 1.21714 0.95631 0.96445 1.01594 1.21104 0.93539 0.96113 0.99080 0.91328 1.21782 1.02437 0.99019 0.96313 1.21532 0.89267 0.94712 0.96381 0.94300 1.21794 1.01121 0.94793 0.98812 1.21852 1.01762 0.96488 1.01384 1.60729 1.07109 1.43333 1.19761 1.22326 0.98061 0.95709 0.86373 0.91820 1.22959 1.00413 0.96675 0.99189 1.22266 0.90690 1.00890 0.99946 1.19592 0.94326 0.90866 0.92330 0.95226 1.21192 0.91157 1.37199 1.05056 0.92633 1.24992 0.98259 0.95475 0.95345 1.69975 1.34902 1.39073 1.09102 0.86611 0.86271 0.77567 0.77994 1.19778 1.21152 1.21182 1.22423 0.92706 0.98173 1.00631 0.92976 0.92939 0.93052 0.92161 0.91796 0.92061 0.92466 0.91279 0.93363 0.93797 0.91681 0.90938 0.92857 0.92411 0.92960 0.84067 0.93495 0.93827 0.93668 0.92051 0.93280 0.93751 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.13 -1.16 5.69 -26.73 -0.15 -1.31 16 3 C -0.12 -1.16 4.32 -26.73 -0.12 -1.27 16 4 C -0.08 -0.93 2.27 -90.61 -0.21 -1.14 16 5 H 0.07 0.93 7.40 -51.93 -0.38 0.55 16 6 C -0.14 -1.58 8.35 37.16 0.31 -1.27 16 7 C 0.09 1.15 1.64 -67.71 -0.11 1.04 16 8 H 0.04 0.54 7.73 -51.93 -0.40 0.14 16 9 C -0.13 -1.37 4.70 -26.73 -0.13 -1.49 16 10 C -0.16 -1.68 9.64 37.16 0.36 -1.32 16 11 N -0.68 -10.15 5.47 -98.56 -0.54 -10.69 16 12 C 0.08 1.51 3.00 -66.59 -0.20 1.31 16 13 H 0.06 1.13 7.15 -51.93 -0.37 0.76 16 14 C -0.15 -2.88 6.28 -25.61 -0.16 -3.04 16 15 C -0.10 -2.32 5.75 -25.07 -0.14 -2.46 16 16 C 0.05 1.19 2.73 -89.77 -0.24 0.95 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.51 -14.10 8.49 -34.44 -0.29 -14.40 16 19 H 0.06 1.54 7.77 -52.49 -0.41 1.13 16 20 C 0.06 1.70 5.36 -17.82 -0.10 1.60 16 21 N -0.89 -25.98 12.41 55.43 0.69 -25.29 16 22 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.10 -2.13 5.95 -25.07 -0.15 -2.28 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.06 0.58 6.69 -51.93 -0.35 0.23 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.92 7.75 -51.93 -0.40 0.51 16 35 H 0.05 0.51 6.48 -51.93 -0.34 0.17 16 36 H 0.04 0.46 6.56 -51.93 -0.34 0.12 16 37 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16 38 H 0.07 0.79 6.70 -51.93 -0.35 0.44 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.66 6.67 -51.93 -0.35 0.31 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.34 5.12 6.07 -39.29 -0.24 4.88 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.75 7.59 -51.93 -0.39 0.35 16 45 H 0.04 1.08 8.04 -51.93 -0.42 0.67 16 46 H 0.06 1.57 7.63 -51.93 -0.40 1.17 16 47 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.06 1.30 7.94 -51.93 -0.41 0.89 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -27.63 363.71 -9.93 -37.56 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -9.58 Total: 2.33 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -0.96 Total: -25.94 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.15 Total: -35.98 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.63 -9.93 -37.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453296031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.222 kcal (2) G-P(sol) polarization free energy of solvation -27.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds