Wall clock time and date at job start Mon Mar 30 2020 07:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46934 * 2 1 4 4 C 1.53009 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46652 * 55.00155 * 4 3 2 6 6 C 1.52998 * 109.46888 * 295.00345 * 4 3 2 7 7 C 1.53002 * 109.47023 * 174.99839 * 4 3 2 8 8 H 1.09001 * 109.47077 * 305.00233 * 7 4 3 9 9 C 1.53003 * 109.46680 * 65.00169 * 7 4 3 10 10 C 1.52998 * 109.46679 * 185.79050 * 9 7 4 11 11 N 1.46903 * 109.46854 * 185.00051 * 7 4 3 12 12 C 1.46896 * 110.99580 * 85.00788 * 11 7 4 13 13 H 1.08997 * 110.05914 * 325.14821 * 12 11 7 14 14 C 1.53876 * 110.03192 * 86.56942 * 12 11 7 15 15 C 1.54265 * 106.59842 * 119.28189 * 14 12 11 16 16 C 1.54896 * 104.19783 * 23.60691 * 15 14 12 17 17 H 1.09004 * 110.75083 * 80.37420 * 16 15 14 18 18 C 1.50705 * 110.75611 * 203.74153 * 16 15 14 19 19 H 1.07998 * 119.99614 * 113.32933 * 18 16 15 20 20 C 1.37878 * 120.00132 * 293.33068 * 18 16 15 21 21 N 1.31512 * 119.99787 * 0.02562 * 20 18 16 22 22 Si 1.86791 * 119.99668 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47637 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47142 * 119.99826 * 22 20 18 25 25 H 1.48505 * 109.47277 * 239.99879 * 22 20 18 26 26 C 1.54273 * 110.02683 * 203.73223 * 12 11 7 27 27 H 1.09001 * 109.47492 * 299.99859 * 1 2 3 28 28 H 1.09002 * 109.47133 * 60.00359 * 1 2 3 29 29 H 1.09001 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47492 * 240.00140 * 2 1 3 31 31 H 1.09003 * 109.46854 * 120.00112 * 2 1 3 32 32 H 1.09005 * 109.47374 * 59.99931 * 3 2 1 33 33 H 1.09003 * 109.47442 * 299.99752 * 3 2 1 34 34 H 1.09004 * 109.46672 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.47147 * 299.99177 * 6 4 3 36 36 H 1.08996 * 109.47339 * 59.99599 * 6 4 3 37 37 H 1.08994 * 109.47415 * 305.78790 * 9 7 4 38 38 H 1.09004 * 109.46725 * 65.79390 * 9 7 4 39 39 H 1.08998 * 109.47223 * 173.90858 * 10 9 7 40 40 H 1.09004 * 109.47564 * 293.91000 * 10 9 7 41 41 H 1.08996 * 109.47157 * 53.90782 * 10 9 7 42 42 H 1.00896 * 110.99817 * 208.96386 * 11 7 4 43 43 H 1.08999 * 110.02965 * 238.56418 * 14 12 11 44 44 H 1.08995 * 110.03368 * 359.97438 * 14 12 11 45 45 H 1.09006 * 110.48873 * 264.93034 * 15 14 12 46 46 H 1.08993 * 110.48978 * 142.28809 * 15 14 12 47 47 H 0.96997 * 119.99764 * 180.02562 * 21 20 18 48 48 H 1.09005 * 110.48484 * 98.43215 * 26 12 11 49 49 H 1.08991 * 110.60041 * 335.84129 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0794 0.8330 1.3083 7 6 4.0800 2.8796 -0.1251 8 1 3.6457 3.3430 -1.0110 9 6 3.6747 3.6750 1.1174 10 6 4.0570 5.1445 0.9292 11 7 5.5441 2.8707 -0.2449 12 6 5.9568 2.6691 -1.6402 13 1 5.2590 2.0000 -2.1435 14 6 6.0134 4.0206 -2.3737 15 6 7.4710 4.2064 -2.8435 16 6 8.0329 2.7648 -2.9177 17 1 7.7227 2.2765 -3.8415 18 6 9.5347 2.7699 -2.7927 19 1 10.0058 2.3311 -1.9256 20 6 10.3072 3.3347 -3.7853 21 7 9.7334 3.8695 -4.8409 22 14 12.1687 3.3403 -3.6306 23 1 12.5618 2.6814 -2.3591 24 1 12.7627 2.6022 -4.7742 25 1 12.6617 4.7411 -3.6358 26 6 7.3821 2.0808 -1.6898 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 5.1694 0.8326 1.3085 35 1 3.7158 1.4226 2.1498 36 1 3.7160 -0.1907 1.3978 37 1 2.5976 3.5959 1.2642 38 1 4.1908 3.2741 1.9898 39 1 3.6729 5.7297 1.7647 40 1 5.1426 5.2355 0.8907 41 1 3.6282 5.5152 -0.0017 42 1 5.9428 3.7178 0.1314 43 1 5.3430 4.0074 -3.2330 44 1 5.7342 4.8261 -1.6945 45 1 8.0325 4.7979 -2.1203 46 1 7.4980 4.6774 -3.8260 47 1 10.2769 4.2665 -5.5394 48 1 7.3442 1.0005 -1.8306 49 1 7.9305 2.3271 -0.7807 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453296031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:35 Heat of formation + Delta-G solvation = -62.808803 kcal Electronic energy + Delta-G solvation = -21561.375760 eV Core-core repulsion = 18713.614675 eV Total energy + Delta-G solvation = -2847.761085 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21645 -38.36090 -35.80885 -34.50101 -32.35633 -32.21201 -29.79131 -28.25740 -27.48475 -26.26401 -25.18762 -23.45868 -22.03054 -21.12631 -20.80282 -19.59954 -18.40165 -17.03978 -16.59920 -16.25191 -16.08707 -15.82169 -15.41521 -14.90981 -14.55850 -14.29874 -14.16157 -13.97198 -13.66243 -13.54054 -13.16579 -12.99194 -12.84139 -12.78159 -12.60365 -12.48405 -12.40360 -12.26850 -12.04738 -11.97109 -11.73499 -11.54691 -11.41417 -11.35602 -11.30597 -11.13544 -10.96956 -10.83215 -10.80798 -10.45873 -9.11890 -8.11145 -6.20311 1.39423 1.41168 1.53043 2.43933 3.19236 3.31033 3.86129 3.92951 4.03737 4.11501 4.20139 4.22740 4.30045 4.33307 4.38623 4.48617 4.65598 4.69433 4.75272 4.81905 4.85969 4.86747 4.96551 5.00708 5.02978 5.06302 5.08281 5.14330 5.15483 5.18846 5.24237 5.26942 5.28456 5.37773 5.38850 5.43951 5.45806 5.48933 5.52457 5.63824 5.65955 5.71383 5.92449 6.00889 6.36051 6.42840 6.65964 6.90928 7.46959 8.98055 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.003847 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.059309 B = 7275.869396 C = 7591.889369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.077 4.077 5 H 0.047 0.953 6 C -0.133 4.133 7 C 0.091 3.909 8 H 0.032 0.968 9 C -0.120 4.120 10 C -0.157 4.157 11 N -0.675 5.675 12 C 0.101 3.899 13 H 0.068 0.932 14 C -0.140 4.140 15 C -0.091 4.091 16 C 0.038 3.962 17 H -0.003 1.003 18 C -0.527 4.527 19 H 0.051 0.949 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.953 3.047 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.091 4.091 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.341 0.659 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.259 0.741 48 H 0.043 0.957 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.532 -2.394 12.554 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.147 4.147 4 C -0.096 4.096 5 H 0.065 0.935 6 C -0.190 4.190 7 C -0.018 4.018 8 H 0.050 0.950 9 C -0.158 4.158 10 C -0.215 4.215 11 N -0.307 5.307 12 C -0.010 4.010 13 H 0.086 0.914 14 C -0.179 4.179 15 C -0.130 4.130 16 C 0.019 3.981 17 H 0.015 0.985 18 C -0.565 4.565 19 H 0.070 0.930 20 C -0.189 4.189 21 N -0.561 5.561 22 Si 0.779 3.221 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.206 1.206 26 C -0.129 4.129 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.161 0.839 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.442 -2.969 12.581 21.710 hybrid contribution 1.139 1.001 -1.093 1.869 sum -16.302 -1.969 11.489 20.041 Atomic orbital electron populations 1.21764 0.95285 1.01813 1.01902 1.21562 0.96207 0.96706 1.01803 1.21658 0.93978 0.97069 1.02031 1.21074 0.94928 0.95157 0.98477 0.93489 1.21724 1.01014 0.99798 0.96488 1.21621 0.87327 0.95653 0.97236 0.95015 1.21749 1.02128 0.94398 0.97524 1.21850 1.01107 0.96624 1.01898 1.60657 1.09019 1.43541 1.17480 1.22018 0.96106 0.94782 0.88055 0.91419 1.22845 0.97131 0.98070 0.99876 1.22044 0.93646 0.99174 0.98091 1.19575 0.93651 0.92260 0.92620 0.98488 1.21544 0.92830 1.37131 1.05020 0.93024 1.25781 1.02903 0.95146 0.95038 1.70100 1.36532 1.39748 1.09759 0.85583 0.80676 0.77709 0.78171 1.19050 1.20700 1.20644 1.22245 0.94441 0.97921 0.98293 0.92206 0.93010 0.92484 0.93133 0.91542 0.90808 0.92750 0.93359 0.92050 0.93027 0.89987 0.90804 0.91285 0.93430 0.93347 0.83896 0.92998 0.91706 0.94847 0.95035 0.93214 0.93822 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.38 16 2 C -0.13 -2.08 5.69 30.59 0.17 -1.91 16 3 C -0.11 -1.94 4.32 30.60 0.13 -1.80 16 4 C -0.08 -1.69 2.27 -10.79 -0.02 -1.72 16 5 H 0.05 1.24 7.40 -2.38 -0.02 1.22 16 6 C -0.13 -2.79 8.35 71.98 0.60 -2.19 16 7 C 0.09 2.13 1.64 44.92 0.07 2.20 16 8 H 0.03 0.81 7.73 -2.39 -0.02 0.79 16 9 C -0.12 -2.24 4.70 30.59 0.14 -2.10 16 10 C -0.16 -2.95 9.64 71.98 0.69 -2.26 16 11 N -0.68 -19.37 5.47 -465.75 -2.55 -21.92 16 12 C 0.10 3.52 3.00 45.64 0.14 3.66 16 13 H 0.07 2.35 7.15 -2.39 -0.02 2.33 16 14 C -0.14 -5.19 6.28 31.32 0.20 -4.99 16 15 C -0.09 -4.35 5.75 31.67 0.18 -4.17 16 16 C 0.04 1.95 2.73 -10.25 -0.03 1.92 16 17 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 18 C -0.53 -29.95 8.49 25.60 0.22 -29.73 16 19 H 0.05 2.90 7.77 -2.91 -0.02 2.88 16 20 C 0.01 0.55 5.36 84.66 0.45 1.00 16 21 N -0.92 -55.04 12.41 21.45 0.27 -54.77 16 22 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 C -0.09 -3.86 5.95 31.67 0.19 -3.67 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.07 6.56 -2.39 -0.02 1.05 16 32 H 0.07 1.14 6.69 -2.38 -0.02 1.12 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.22 7.75 -2.38 -0.02 1.20 16 35 H 0.06 1.12 6.48 -2.39 -0.02 1.10 16 36 H 0.05 0.99 6.56 -2.39 -0.02 0.98 16 37 H 0.08 1.29 6.42 -2.39 -0.02 1.28 16 38 H 0.07 1.39 6.70 -2.39 -0.02 1.38 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 0.99 6.67 -2.38 -0.02 0.97 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.34 9.75 6.07 -89.70 -0.54 9.21 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 2.13 7.59 -2.39 -0.02 2.11 16 45 H 0.03 1.63 8.04 -2.38 -0.02 1.61 16 46 H 0.03 1.66 7.63 -2.39 -0.02 1.64 16 47 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 48 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 49 H 0.05 2.39 7.94 -2.39 -0.02 2.37 16 Total: -1.00 -60.18 363.71 3.94 -56.25 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.33 Total: 20.83 kcal Atomic # 6 Polarization: -50.99 SS G_CDS: 3.86 Total: -47.14 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.28 Total: -76.69 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -60.18 3.94 -56.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453296031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.560 kcal (2) G-P(sol) polarization free energy of solvation -60.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds