Wall clock time and date at job start Mon Mar 30 2020 07:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47349 * 2 1 4 4 H 1.09002 * 109.47042 * 175.00704 * 3 2 1 5 5 C 1.50699 * 109.47098 * 55.00980 * 3 2 1 6 6 H 1.07990 * 120.00337 * 239.99942 * 5 3 2 7 7 C 1.37878 * 119.99830 * 60.00003 * 5 3 2 8 8 N 1.31518 * 120.00132 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00022 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47215 * 269.99976 * 9 7 5 11 11 H 1.48498 * 109.47020 * 30.00318 * 9 7 5 12 12 H 1.48507 * 109.46953 * 150.00129 * 9 7 5 13 13 N 1.46901 * 109.47219 * 295.01012 * 3 2 1 14 14 C 1.46897 * 111.00087 * 275.44409 * 13 3 2 15 15 H 1.09004 * 109.47207 * 35.36824 * 14 13 3 16 16 C 1.52998 * 109.46986 * 275.37119 * 14 13 3 17 17 C 1.52998 * 109.47441 * 155.37083 * 14 13 3 18 18 H 1.08999 * 109.46899 * 54.83728 * 17 14 13 19 19 C 1.53000 * 109.47086 * 294.84380 * 17 14 13 20 20 C 1.52998 * 109.47432 * 174.84097 * 17 14 13 21 21 C 1.53003 * 109.47274 * 183.48013 * 20 17 14 22 22 C 1.52998 * 109.47274 * 180.02562 * 21 20 17 23 23 C 1.52996 * 109.47131 * 59.99730 * 22 21 20 24 24 C 1.53003 * 109.47262 * 300.00278 * 23 22 21 25 25 C 1.53000 * 109.46976 * 63.48071 * 20 17 14 26 26 H 1.08997 * 109.47524 * 185.01838 * 1 2 3 27 27 H 1.09004 * 109.46567 * 305.01294 * 1 2 3 28 28 H 1.09000 * 109.47354 * 65.00712 * 1 2 3 29 29 H 1.08998 * 109.46920 * 240.00171 * 2 1 3 30 30 H 1.08997 * 109.47342 * 120.00308 * 2 1 3 31 31 H 0.96993 * 119.99867 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99615 * 39.39773 * 13 3 2 33 33 H 1.08998 * 109.47080 * 302.88036 * 16 14 13 34 34 H 1.09003 * 109.47038 * 62.88413 * 16 14 13 35 35 H 1.09005 * 109.47061 * 182.88204 * 16 14 13 36 36 H 1.09001 * 109.47517 * 59.99211 * 19 17 14 37 37 H 1.08998 * 109.47174 * 180.02562 * 19 17 14 38 38 H 1.09007 * 109.47160 * 299.99891 * 19 17 14 39 39 H 1.08996 * 109.46903 * 303.48057 * 20 17 14 40 40 H 1.08997 * 109.46673 * 300.00430 * 21 20 17 41 41 H 1.08999 * 109.46934 * 59.99491 * 21 20 17 42 42 H 1.09006 * 109.46866 * 300.00035 * 22 21 20 43 43 H 1.08993 * 109.46926 * 180.02562 * 22 21 20 44 44 H 1.08994 * 109.47285 * 179.97438 * 23 22 21 45 45 H 1.09006 * 109.47253 * 59.99899 * 23 22 21 46 46 H 1.08996 * 109.47191 * 299.99942 * 24 23 22 47 47 H 1.09003 * 109.46667 * 179.97438 * 24 23 22 48 48 H 1.09006 * 109.46780 * 299.99895 * 25 20 17 49 49 H 1.08996 * 109.47316 * 60.00239 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1264 1.4437 0.0894 5 6 1.4394 2.1877 1.1640 6 1 0.8298 3.0617 0.9890 7 6 1.6681 1.7535 2.4525 8 7 1.1435 2.4035 3.4683 9 14 2.7219 0.2411 2.7552 10 1 1.8605 -0.9685 2.7654 11 1 3.7342 0.1190 1.6756 12 1 3.4088 0.3707 4.0655 13 7 1.6513 2.0994 -1.2551 14 6 2.6202 1.8128 -2.3214 15 1 2.9966 0.7962 -2.2068 16 6 3.7847 2.8010 -2.2313 17 6 1.9366 1.9529 -3.6830 18 1 1.4806 2.9399 -3.7607 19 6 0.8555 0.8794 -3.8238 20 6 2.9737 1.7812 -4.7946 21 6 2.3074 2.0072 -6.1532 22 6 3.3444 1.8349 -7.2648 23 6 3.9214 0.4190 -7.2090 24 6 4.5878 0.1930 -5.8503 25 6 3.5512 0.3655 -4.7390 26 1 -0.3634 -1.0237 0.0899 27 1 -0.3632 0.5897 0.8417 28 1 -0.3634 0.4342 -0.9314 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.3047 2.0982 4.3748 32 1 0.7192 1.8288 -1.5311 33 1 3.4025 3.8198 -2.2947 34 1 4.3034 2.6658 -1.2822 35 1 4.4781 2.6213 -3.0530 36 1 0.1166 1.0017 -3.0318 37 1 0.3688 0.9790 -4.7940 38 1 1.3114 -0.1077 -3.7460 39 1 3.7759 2.5065 -4.6582 40 1 1.5052 1.2820 -6.2895 41 1 1.8959 3.0158 -6.1928 42 1 4.1469 2.5599 -7.1286 43 1 2.8698 1.9963 -8.2326 44 1 4.6599 0.2961 -8.0012 45 1 3.1189 -0.3060 -7.3451 46 1 5.3902 0.9180 -5.7141 47 1 4.9984 -0.8159 -5.8105 48 1 4.0260 0.2046 -3.7710 49 1 2.7491 -0.3597 -4.8754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000474922096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:26 Heat of formation + Delta-G solvation = -34.761908 kcal Electronic energy + Delta-G solvation = -22347.074287 eV Core-core repulsion = 19500.529407 eV Total energy + Delta-G solvation = -2846.544880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.63946 -37.20581 -34.73090 -32.07357 -31.22607 -30.76112 -28.96113 -28.36015 -26.31012 -23.97697 -23.16778 -22.82297 -21.80918 -20.16878 -19.24057 -18.50154 -16.42027 -15.73767 -15.29066 -15.03834 -14.69946 -14.28195 -14.22081 -13.57975 -13.45970 -13.26000 -13.11216 -12.62650 -12.45631 -12.32254 -12.16886 -12.04247 -11.83411 -11.58108 -11.32043 -11.16577 -11.01884 -10.89814 -10.80606 -10.70493 -10.53462 -10.39889 -10.30900 -10.03352 -9.91353 -9.76324 -9.64849 -9.27965 -9.01926 -8.49116 -7.28594 -5.99804 -3.94712 3.28769 3.38567 3.40612 4.44950 4.58817 4.65626 4.69770 5.00548 5.07175 5.15089 5.29165 5.30728 5.36536 5.44970 5.45395 5.52183 5.55087 5.61141 5.69144 5.82213 5.87603 5.93003 5.95193 6.02034 6.05922 6.09847 6.11820 6.13987 6.14085 6.18762 6.22595 6.25803 6.33589 6.42408 6.48408 6.55019 6.63646 6.66529 6.83133 6.86544 6.94682 7.07903 7.30917 7.81076 8.04582 8.48175 8.77813 9.12246 9.64105 11.13791 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031587 B = 0.004694 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.238797 B = 5964.209537 C = 6039.755841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.186 3.814 4 H 0.032 0.968 5 C -0.487 4.487 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.903 5.903 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.271 1.271 12 H -0.298 1.298 13 N -0.669 5.669 14 C 0.086 3.914 15 H 0.034 0.966 16 C -0.139 4.139 17 C -0.087 4.087 18 H 0.075 0.925 19 C -0.154 4.154 20 C -0.081 4.081 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.119 4.119 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.047 0.953 31 H 0.262 0.738 32 H 0.331 0.669 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 -4.377 -19.976 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.197 4.197 3 C 0.077 3.923 4 H 0.050 0.950 5 C -0.525 4.525 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.542 5.542 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.196 1.196 12 H -0.225 1.225 13 N -0.302 5.302 14 C -0.024 4.024 15 H 0.052 0.948 16 C -0.197 4.197 17 C -0.106 4.106 18 H 0.094 0.906 19 C -0.211 4.211 20 C -0.099 4.099 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.156 4.156 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.294 -3.759 -19.605 20.419 hybrid contribution 0.377 -1.930 0.198 1.976 sum 4.670 -5.689 -19.407 20.756 Atomic orbital electron populations 1.21657 0.95918 0.99484 1.02404 1.22490 0.97141 1.01332 0.98726 1.19695 0.95834 0.87982 0.88786 0.95015 1.20919 1.30918 1.12579 0.88116 0.90134 1.24891 0.95578 0.96558 0.96207 1.69884 1.45246 1.40332 0.98713 0.86982 0.81197 0.84009 0.76746 1.20736 1.19602 1.22548 1.60728 1.04188 1.62631 1.02639 1.21498 0.93819 0.96780 0.90318 0.94780 1.21858 0.97234 1.00033 1.00598 1.21293 0.95488 0.99607 0.94192 0.90619 1.22005 0.98778 0.98989 1.01333 1.21220 0.97738 0.97176 0.93810 1.21636 0.97904 1.01472 0.94256 1.21527 0.98786 0.96916 0.98402 1.21523 0.99784 0.97137 0.97132 1.21531 0.98254 1.01081 0.94828 1.21688 0.98339 0.97136 0.98448 0.95214 0.90087 0.94115 0.94981 0.93518 0.92831 0.84792 0.92311 0.92880 0.93378 0.92460 0.92749 0.92722 0.90664 0.91905 0.92164 0.92194 0.92487 0.92581 0.92265 0.92199 0.92470 0.91701 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.40 37.16 0.35 -2.42 16 2 C -0.16 -3.40 5.20 -26.73 -0.14 -3.54 16 3 C 0.19 4.34 1.74 -68.86 -0.12 4.22 16 4 H 0.03 0.79 6.17 -51.93 -0.32 0.47 16 5 C -0.49 -13.49 7.84 -34.44 -0.27 -13.76 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 7 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 8 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 9 Si 0.88 22.09 24.32 -169.99 -4.13 17.96 16 10 H -0.28 -6.89 6.91 56.52 0.39 -6.49 16 11 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 12 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 13 N -0.67 -13.41 6.04 -100.96 -0.61 -14.02 16 14 C 0.09 1.42 1.62 -67.72 -0.11 1.31 16 15 H 0.03 0.59 5.71 -51.93 -0.30 0.29 16 16 C -0.14 -2.25 8.99 37.16 0.33 -1.91 16 17 C -0.09 -1.15 1.89 -90.62 -0.17 -1.32 16 18 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.15 -1.94 8.30 37.16 0.31 -1.63 16 20 C -0.08 -0.90 1.61 -90.62 -0.15 -1.05 16 21 C -0.12 -1.13 4.93 -26.73 -0.13 -1.26 16 22 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 24 C -0.12 -1.14 5.92 -26.76 -0.16 -1.30 16 25 C -0.12 -1.31 4.48 -26.76 -0.12 -1.43 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.87 6.87 -51.93 -0.36 1.51 16 28 H 0.04 0.73 6.07 -51.93 -0.32 0.41 16 29 H 0.03 0.62 7.34 -51.93 -0.38 0.24 16 30 H 0.05 1.08 3.41 -51.93 -0.18 0.90 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.33 6.33 4.45 -39.29 -0.17 6.16 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.95 7.43 -51.93 -0.39 0.57 16 35 H 0.05 0.65 6.10 -51.93 -0.32 0.33 16 36 H 0.06 0.78 5.87 -51.93 -0.30 0.48 16 37 H 0.05 0.60 6.52 -51.93 -0.34 0.26 16 38 H 0.05 0.69 6.37 -51.93 -0.33 0.36 16 39 H 0.08 0.88 6.08 -51.93 -0.32 0.56 16 40 H 0.06 0.62 6.52 -51.93 -0.34 0.28 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.80 6.64 -51.93 -0.34 0.46 16 49 H 0.06 0.71 6.36 -51.93 -0.33 0.38 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -28.80 339.74 -8.49 -37.30 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.86 Total: 5.04 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -0.79 Total: -24.62 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.16 Total: -40.80 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.13 Total: 17.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.80 -8.49 -37.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000474922096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.535 kcal (2) G-P(sol) polarization free energy of solvation -28.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds