Wall clock time and date at job start Mon Mar 30 2020 07:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47349 * 2 1 4 4 H 1.09002 * 109.47042 * 175.00704 * 3 2 1 5 5 C 1.50699 * 109.47098 * 55.00980 * 3 2 1 6 6 H 1.07990 * 120.00337 * 239.99942 * 5 3 2 7 7 C 1.37878 * 119.99830 * 60.00003 * 5 3 2 8 8 N 1.31518 * 120.00132 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00022 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47215 * 269.99976 * 9 7 5 11 11 H 1.48498 * 109.47020 * 30.00318 * 9 7 5 12 12 H 1.48507 * 109.46953 * 150.00129 * 9 7 5 13 13 N 1.46901 * 109.47219 * 295.01012 * 3 2 1 14 14 C 1.46897 * 111.00087 * 275.44409 * 13 3 2 15 15 H 1.09004 * 109.47207 * 35.36824 * 14 13 3 16 16 C 1.52998 * 109.46986 * 275.37119 * 14 13 3 17 17 C 1.52998 * 109.47441 * 155.37083 * 14 13 3 18 18 H 1.08999 * 109.46899 * 54.83728 * 17 14 13 19 19 C 1.53000 * 109.47086 * 294.84380 * 17 14 13 20 20 C 1.52998 * 109.47432 * 174.84097 * 17 14 13 21 21 C 1.53003 * 109.47274 * 183.48013 * 20 17 14 22 22 C 1.52998 * 109.47274 * 180.02562 * 21 20 17 23 23 C 1.52996 * 109.47131 * 59.99730 * 22 21 20 24 24 C 1.53003 * 109.47262 * 300.00278 * 23 22 21 25 25 C 1.53000 * 109.46976 * 63.48071 * 20 17 14 26 26 H 1.08997 * 109.47524 * 185.01838 * 1 2 3 27 27 H 1.09004 * 109.46567 * 305.01294 * 1 2 3 28 28 H 1.09000 * 109.47354 * 65.00712 * 1 2 3 29 29 H 1.08998 * 109.46920 * 240.00171 * 2 1 3 30 30 H 1.08997 * 109.47342 * 120.00308 * 2 1 3 31 31 H 0.96993 * 119.99867 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99615 * 39.39773 * 13 3 2 33 33 H 1.08998 * 109.47080 * 302.88036 * 16 14 13 34 34 H 1.09003 * 109.47038 * 62.88413 * 16 14 13 35 35 H 1.09005 * 109.47061 * 182.88204 * 16 14 13 36 36 H 1.09001 * 109.47517 * 59.99211 * 19 17 14 37 37 H 1.08998 * 109.47174 * 180.02562 * 19 17 14 38 38 H 1.09007 * 109.47160 * 299.99891 * 19 17 14 39 39 H 1.08996 * 109.46903 * 303.48057 * 20 17 14 40 40 H 1.08997 * 109.46673 * 300.00430 * 21 20 17 41 41 H 1.08999 * 109.46934 * 59.99491 * 21 20 17 42 42 H 1.09006 * 109.46866 * 300.00035 * 22 21 20 43 43 H 1.08993 * 109.46926 * 180.02562 * 22 21 20 44 44 H 1.08994 * 109.47285 * 179.97438 * 23 22 21 45 45 H 1.09006 * 109.47253 * 59.99899 * 23 22 21 46 46 H 1.08996 * 109.47191 * 299.99942 * 24 23 22 47 47 H 1.09003 * 109.46667 * 179.97438 * 24 23 22 48 48 H 1.09006 * 109.46780 * 299.99895 * 25 20 17 49 49 H 1.08996 * 109.47316 * 60.00239 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1264 1.4437 0.0894 5 6 1.4394 2.1877 1.1640 6 1 0.8298 3.0617 0.9890 7 6 1.6681 1.7535 2.4525 8 7 1.1435 2.4035 3.4683 9 14 2.7219 0.2411 2.7552 10 1 1.8605 -0.9685 2.7654 11 1 3.7342 0.1190 1.6756 12 1 3.4088 0.3707 4.0655 13 7 1.6513 2.0994 -1.2551 14 6 2.6202 1.8128 -2.3214 15 1 2.9966 0.7962 -2.2068 16 6 3.7847 2.8010 -2.2313 17 6 1.9366 1.9529 -3.6830 18 1 1.4806 2.9399 -3.7607 19 6 0.8555 0.8794 -3.8238 20 6 2.9737 1.7812 -4.7946 21 6 2.3074 2.0072 -6.1532 22 6 3.3444 1.8349 -7.2648 23 6 3.9214 0.4190 -7.2090 24 6 4.5878 0.1930 -5.8503 25 6 3.5512 0.3655 -4.7390 26 1 -0.3634 -1.0237 0.0899 27 1 -0.3632 0.5897 0.8417 28 1 -0.3634 0.4342 -0.9314 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.3047 2.0982 4.3748 32 1 0.7192 1.8288 -1.5311 33 1 3.4025 3.8198 -2.2947 34 1 4.3034 2.6658 -1.2822 35 1 4.4781 2.6213 -3.0530 36 1 0.1166 1.0017 -3.0318 37 1 0.3688 0.9790 -4.7940 38 1 1.3114 -0.1077 -3.7460 39 1 3.7759 2.5065 -4.6582 40 1 1.5052 1.2820 -6.2895 41 1 1.8959 3.0158 -6.1928 42 1 4.1469 2.5599 -7.1286 43 1 2.8698 1.9963 -8.2326 44 1 4.6599 0.2961 -8.0012 45 1 3.1189 -0.3060 -7.3451 46 1 5.3902 0.9180 -5.7141 47 1 4.9984 -0.8159 -5.8105 48 1 4.0260 0.2046 -3.7710 49 1 2.7491 -0.3597 -4.8754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000474922096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:25 Heat of formation + Delta-G solvation = -51.260630 kcal Electronic energy + Delta-G solvation = -22347.789725 eV Core-core repulsion = 19500.529407 eV Total energy + Delta-G solvation = -2847.260318 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.66465 -38.60858 -36.09357 -34.01362 -32.62685 -31.57050 -30.15403 -29.68287 -28.13966 -25.13411 -24.91017 -23.68186 -22.92204 -21.24963 -20.80933 -19.56429 -18.42345 -17.15834 -16.86968 -16.30180 -15.84094 -15.23160 -15.11153 -15.01226 -14.84682 -14.79168 -14.52449 -14.30295 -14.00360 -13.40270 -13.10592 -13.03187 -12.97190 -12.88057 -12.65027 -12.53623 -12.47818 -12.37321 -12.21089 -11.96213 -11.82678 -11.61281 -11.55091 -11.33894 -11.21424 -11.12433 -10.95041 -10.75118 -10.67127 -10.56596 -8.91156 -8.23178 -6.21663 1.28038 1.33208 1.42007 2.33463 3.11844 3.48962 3.80928 3.85383 3.94108 4.12517 4.15633 4.24652 4.30449 4.37493 4.43936 4.50770 4.56435 4.57458 4.64826 4.70523 4.73943 4.79013 4.83183 4.86744 4.92215 4.95500 4.97851 5.10712 5.13403 5.18489 5.21539 5.24849 5.26462 5.31080 5.34214 5.35454 5.41134 5.45324 5.49554 5.53656 5.59462 5.63861 5.72890 5.78943 6.15116 6.79092 6.82775 6.90781 7.41774 8.94320 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031587 B = 0.004694 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.238797 B = 5964.209537 C = 6039.755841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.155 4.155 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.482 4.482 6 H 0.035 0.965 7 C 0.015 3.985 8 N -0.951 5.951 9 Si 0.939 3.061 10 H -0.267 1.267 11 H -0.256 1.256 12 H -0.301 1.301 13 N -0.682 5.682 14 C 0.087 3.913 15 H 0.033 0.967 16 C -0.136 4.136 17 C -0.079 4.079 18 H 0.067 0.933 19 C -0.151 4.151 20 C -0.075 4.075 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.117 4.117 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.336 0.664 33 H 0.050 0.950 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 -6.254 -22.694 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.194 4.194 3 C 0.083 3.917 4 H 0.037 0.963 5 C -0.521 4.521 6 H 0.054 0.946 7 C -0.182 4.182 8 N -0.592 5.592 9 Si 0.768 3.232 10 H -0.193 1.193 11 H -0.181 1.181 12 H -0.229 1.229 13 N -0.315 5.315 14 C -0.023 4.023 15 H 0.051 0.949 16 C -0.194 4.194 17 C -0.098 4.098 18 H 0.086 0.914 19 C -0.208 4.208 20 C -0.093 4.093 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.155 4.155 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.021 -5.640 -22.357 23.598 hybrid contribution 0.117 -1.239 0.987 1.589 sum 5.138 -6.879 -21.370 23.030 Atomic orbital electron populations 1.21574 0.94977 1.00548 1.01834 1.22401 0.97985 0.99604 0.99423 1.19415 0.94511 0.89015 0.88712 0.96328 1.21119 1.29667 1.11299 0.90030 0.94638 1.25633 0.96977 0.99623 0.95934 1.70036 1.47442 1.42539 0.99232 0.85997 0.79898 0.80676 0.76651 1.19303 1.18070 1.22886 1.60588 1.05354 1.62777 1.02745 1.21580 0.93244 0.96581 0.90871 0.94927 1.21846 0.97568 0.99585 1.00416 1.21209 0.96089 0.99587 0.92905 0.91408 1.21983 0.98188 0.98688 1.01963 1.21155 0.96992 0.97342 0.93855 1.21606 0.98198 1.01598 0.93577 1.21521 0.98489 0.97015 0.98453 1.21517 1.00054 0.97026 0.96792 1.21520 0.97828 1.01400 0.94822 1.21661 0.98695 0.96805 0.98308 0.92680 0.93799 0.92197 0.92139 0.94721 0.92851 0.84231 0.93077 0.95293 0.90561 0.93728 0.90825 0.92414 0.91097 0.91562 0.92159 0.92270 0.91366 0.91521 0.92069 0.92306 0.91974 0.93183 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 9.40 71.98 0.68 -4.44 16 2 C -0.16 -6.39 5.20 30.59 0.16 -6.23 16 3 C 0.19 8.99 1.74 44.17 0.08 9.07 16 4 H 0.02 0.93 6.17 -2.39 -0.01 0.91 16 5 C -0.48 -27.56 7.84 25.60 0.20 -27.36 16 6 H 0.04 2.29 8.06 -2.92 -0.02 2.27 16 7 C 0.01 0.86 5.43 84.65 0.46 1.32 16 8 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 9 Si 0.94 45.79 24.32 68.60 1.67 47.46 16 10 H -0.27 -12.36 6.91 99.48 0.69 -11.68 16 11 H -0.26 -11.77 6.53 99.48 0.65 -11.13 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 13 N -0.68 -27.16 6.04 -473.31 -2.86 -30.02 16 14 C 0.09 2.76 1.62 44.91 0.07 2.83 16 15 H 0.03 1.07 5.71 -2.38 -0.01 1.05 16 16 C -0.14 -4.31 8.99 71.98 0.65 -3.67 16 17 C -0.08 -1.95 1.89 -10.79 -0.02 -1.97 16 18 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 19 C -0.15 -3.42 8.30 71.98 0.60 -2.83 16 20 C -0.07 -1.50 1.61 -10.79 -0.02 -1.51 16 21 C -0.11 -1.89 4.93 30.59 0.15 -1.74 16 22 C -0.12 -1.70 5.92 30.59 0.18 -1.52 16 23 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 24 C -0.12 -1.94 5.92 30.58 0.18 -1.76 16 25 C -0.12 -2.29 4.48 30.58 0.14 -2.15 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.04 2.02 6.87 -2.38 -0.02 2.00 16 28 H 0.06 2.05 6.07 -2.39 -0.01 2.03 16 29 H 0.06 2.16 7.34 -2.39 -0.02 2.14 16 30 H 0.03 1.52 3.41 -2.39 -0.01 1.51 16 31 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.34 12.66 4.45 -89.69 -0.40 12.26 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.03 1.03 7.43 -2.39 -0.02 1.01 16 35 H 0.08 1.95 6.10 -2.38 -0.01 1.93 16 36 H 0.04 1.12 5.87 -2.39 -0.01 1.11 16 37 H 0.07 1.39 6.52 -2.39 -0.02 1.37 16 38 H 0.06 1.28 6.37 -2.38 -0.02 1.26 16 39 H 0.07 1.49 6.08 -2.39 -0.01 1.48 16 40 H 0.07 1.08 6.52 -2.39 -0.02 1.07 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.05 1.12 6.64 -2.38 -0.02 1.11 16 49 H 0.06 1.25 6.36 -2.39 -0.02 1.24 16 Total: -1.00 -63.68 339.74 3.23 -60.45 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.43 Total: 25.33 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 3.68 Total: -43.43 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -2.56 Total: -89.81 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.67 Total: 47.46 kcal Total: -63.68 3.23 -60.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000474922096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.193 kcal (2) G-P(sol) polarization free energy of solvation -63.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds