Wall clock time and date at job start Mon Mar 30 2020 07:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47313 * 2 1 4 4 H 1.08998 * 109.47155 * 305.08161 * 3 2 1 5 5 C 1.50690 * 109.47443 * 185.07591 * 3 2 1 6 6 H 1.08003 * 120.00394 * 240.00476 * 5 3 2 7 7 C 1.37877 * 120.00174 * 59.71992 * 5 3 2 8 8 N 1.31520 * 119.99799 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00415 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46899 * 60.00356 * 9 7 5 11 11 H 1.48497 * 109.47252 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47275 * 300.00501 * 9 7 5 13 13 N 1.46899 * 109.46895 * 65.07582 * 3 2 1 14 14 C 1.46899 * 110.99983 * 206.54387 * 13 3 2 15 15 H 1.08996 * 109.47287 * 328.46121 * 14 13 3 16 16 C 1.53003 * 109.47533 * 88.46130 * 14 13 3 17 17 C 1.52999 * 109.47270 * 208.46256 * 14 13 3 18 18 H 1.09002 * 109.47535 * 59.99613 * 17 14 13 19 19 C 1.52999 * 109.47145 * 299.99764 * 17 14 13 20 20 C 1.53006 * 109.47463 * 179.97438 * 17 14 13 21 21 C 1.52999 * 109.46787 * 300.00033 * 20 17 14 22 22 C 1.52998 * 109.47179 * 179.97438 * 21 20 17 23 23 C 1.53008 * 109.46917 * 59.99830 * 22 21 20 24 24 C 1.52999 * 109.46851 * 299.99849 * 23 22 21 25 25 C 1.52996 * 109.47137 * 180.02562 * 20 17 14 26 26 H 1.09000 * 109.47044 * 55.22375 * 1 2 3 27 27 H 1.09002 * 109.47001 * 175.22682 * 1 2 3 28 28 H 1.08996 * 109.47136 * 295.22310 * 1 2 3 29 29 H 1.09000 * 109.47301 * 239.99509 * 2 1 3 30 30 H 1.09007 * 109.46938 * 120.00156 * 2 1 3 31 31 H 0.97001 * 119.99918 * 179.97438 * 8 7 5 32 32 H 1.00899 * 111.00160 * 330.49585 * 13 3 2 33 33 H 1.09003 * 109.47023 * 57.78626 * 16 14 13 34 34 H 1.08998 * 109.47432 * 177.78644 * 16 14 13 35 35 H 1.08996 * 109.46481 * 297.79330 * 16 14 13 36 36 H 1.08999 * 109.47245 * 300.00085 * 19 17 14 37 37 H 1.09000 * 109.47025 * 60.00027 * 19 17 14 38 38 H 1.08998 * 109.47705 * 179.97438 * 19 17 14 39 39 H 1.08999 * 109.46973 * 59.99887 * 20 17 14 40 40 H 1.08999 * 109.47245 * 299.99688 * 21 20 17 41 41 H 1.09006 * 109.47175 * 59.99620 * 21 20 17 42 42 H 1.08999 * 109.46954 * 300.00082 * 22 21 20 43 43 H 1.08996 * 109.47100 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.46962 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.47103 * 60.00344 * 23 22 21 46 46 H 1.08991 * 109.47454 * 299.99907 * 24 23 22 47 47 H 1.09002 * 109.46777 * 179.97438 * 24 23 22 48 48 H 1.09002 * 109.46769 * 299.99326 * 25 20 17 49 49 H 1.08999 * 109.47384 * 60.00013 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6043 1.9819 -0.8410 5 6 3.5417 1.4444 -0.1257 6 1 4.1480 1.8885 0.6499 7 6 4.1420 0.8738 -1.2280 8 7 3.4039 0.3284 -2.1701 9 14 6.0035 0.8755 -1.3836 10 1 6.5968 0.1459 -0.2343 11 1 6.3950 0.2068 -2.6504 12 1 6.4984 2.2756 -1.3899 13 7 1.6530 2.0986 1.2560 14 6 1.5384 3.5522 1.0770 15 1 2.2494 3.8822 0.3197 16 6 0.1175 3.9005 0.6287 17 6 1.8417 4.2547 2.4019 18 1 2.8539 4.0067 2.7214 19 6 0.8436 3.7916 3.4650 20 6 1.7229 5.7687 2.2154 21 6 2.7215 6.2314 1.1524 22 6 2.6023 7.7452 0.9654 23 6 2.9053 8.4482 2.2902 24 6 1.9067 7.9855 3.3530 25 6 2.0269 6.4712 3.5401 26 1 -0.3633 0.5862 -0.8441 27 1 -0.3633 -1.0241 -0.0855 28 1 -0.3633 0.4379 0.9296 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8262 -0.0726 -2.9458 32 1 0.7949 1.7101 1.6175 33 1 -0.5962 3.5356 1.3674 34 1 0.0213 4.9820 0.5339 35 1 -0.0846 3.4317 -0.3343 36 1 -0.1686 4.0396 3.1456 37 1 0.9286 2.7130 3.5978 38 1 1.0599 4.2916 4.4090 39 1 0.7109 6.0171 1.8958 40 1 3.7335 5.9830 1.4720 41 1 2.5054 5.7309 0.2085 42 1 1.5902 7.9932 0.6456 43 1 3.3140 8.0749 0.2085 44 1 2.8200 9.5267 2.1571 45 1 3.9174 8.2002 2.6100 46 1 0.8947 8.2335 3.0333 47 1 2.1228 8.4859 4.2969 48 1 1.3158 6.1416 4.2976 49 1 3.0391 6.2227 3.8593 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000474922103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:28 Heat of formation + Delta-G solvation = -46.289426 kcal Electronic energy + Delta-G solvation = -22214.274948 eV Core-core repulsion = 19367.230197 eV Total energy + Delta-G solvation = -2847.044751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.28637 -36.87975 -34.55418 -32.03222 -31.06165 -30.55985 -28.65466 -28.01240 -25.99471 -24.30423 -22.83947 -22.29282 -21.45888 -19.71016 -19.51587 -18.33922 -16.15447 -15.60287 -15.17811 -14.66623 -14.20939 -14.00931 -13.85646 -13.73287 -13.34809 -13.13557 -12.78448 -12.57573 -12.25338 -12.03403 -11.99382 -11.63872 -11.56228 -11.39877 -11.11601 -11.05095 -10.96435 -10.82890 -10.72024 -10.61043 -10.43473 -10.14852 -10.01627 -9.89039 -9.86874 -9.61236 -9.60242 -9.15776 -8.99224 -8.28996 -7.07619 -5.90851 -3.94454 3.36958 3.40996 3.44639 4.49161 4.76939 4.84008 4.88962 5.21017 5.29825 5.37045 5.44588 5.50107 5.59261 5.63765 5.66593 5.70176 5.75926 5.78561 5.93801 5.99003 6.02551 6.08899 6.09677 6.19878 6.20712 6.22697 6.24280 6.29460 6.37343 6.41137 6.43877 6.48867 6.51646 6.60929 6.71462 6.73322 6.88879 6.93222 7.00589 7.17444 7.27293 7.60847 7.85080 7.99635 8.43439 8.49715 8.87827 9.14047 9.70379 11.14216 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.005743 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.815151 B = 4874.151408 C = 5888.089338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.094 3.906 15 H 0.081 0.919 16 C -0.181 4.181 17 C -0.072 4.072 18 H 0.072 0.928 19 C -0.144 4.144 20 C -0.081 4.081 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.115 4.115 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.259 0.741 32 H 0.316 0.684 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.340 11.861 8.403 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.311 5.311 14 C -0.016 4.016 15 H 0.100 0.900 16 C -0.240 4.240 17 C -0.091 4.091 18 H 0.091 0.909 19 C -0.201 4.201 20 C -0.100 4.100 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.152 4.152 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.117 0.883 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.660 11.775 8.454 15.226 hybrid contribution 0.144 -0.009 -0.734 0.748 sum -4.516 11.766 7.720 14.779 Atomic orbital electron populations 1.21874 0.99731 0.99516 0.99487 1.21783 0.91106 1.00680 1.02967 1.19139 0.95125 0.89727 0.84765 0.98123 1.21200 0.91363 1.35843 1.04350 0.92206 1.24948 0.97884 0.95785 0.95941 1.69864 1.34676 1.39362 1.09901 0.86654 0.86126 0.78077 0.77064 1.20386 1.21550 1.20485 1.60752 1.36293 1.01607 1.32458 1.21465 0.94493 0.89874 0.95798 0.90049 1.22604 0.99315 1.01027 1.01017 1.21131 0.99899 0.92392 0.95727 0.90946 1.21853 0.98650 1.01698 0.97939 1.21236 0.99115 0.95004 0.94599 1.21644 0.99721 0.94574 0.99592 1.21539 1.01187 0.96130 0.96780 1.21533 0.99393 0.99041 0.95651 1.21539 0.99274 0.96451 0.98297 1.21648 1.01633 0.94260 0.97682 0.93996 0.94549 0.94663 0.88338 0.94198 0.93159 0.86651 0.93167 0.92940 0.93193 0.93532 0.92043 0.93651 0.91484 0.91954 0.91283 0.92425 0.92416 0.92748 0.92172 0.92385 0.92664 0.92017 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.66 37.16 0.36 -2.54 16 2 C -0.13 -3.00 5.35 -26.73 -0.14 -3.14 16 3 C 0.22 5.40 1.84 -68.87 -0.13 5.28 16 4 H 0.00 0.03 7.39 -51.93 -0.38 -0.35 16 5 C -0.49 -13.42 8.60 -34.45 -0.30 -13.71 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.61 11.27 55.43 0.62 -24.99 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.68 -14.07 5.50 -100.96 -0.55 -14.62 16 14 C 0.09 1.70 1.86 -67.71 -0.13 1.58 16 15 H 0.08 1.70 5.94 -51.93 -0.31 1.39 16 16 C -0.18 -2.90 8.46 37.16 0.31 -2.58 16 17 C -0.07 -1.11 1.99 -90.62 -0.18 -1.29 16 18 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 19 C -0.14 -1.99 8.25 37.16 0.31 -1.68 16 20 C -0.08 -1.05 1.43 -90.62 -0.13 -1.18 16 21 C -0.12 -1.62 4.85 -26.73 -0.13 -1.75 16 22 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 23 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 24 C -0.12 -1.21 5.93 -26.70 -0.16 -1.37 16 25 C -0.11 -1.32 4.85 -26.71 -0.13 -1.45 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.62 6.60 -51.93 -0.34 0.27 16 29 H 0.10 2.62 5.93 -51.93 -0.31 2.32 16 30 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.32 6.08 5.64 -39.29 -0.22 5.86 16 33 H 0.05 0.74 6.50 -51.93 -0.34 0.41 16 34 H 0.05 0.75 6.31 -51.93 -0.33 0.43 16 35 H 0.05 0.88 7.73 -51.93 -0.40 0.48 16 36 H 0.05 0.61 6.48 -51.93 -0.34 0.27 16 37 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 38 H 0.04 0.56 6.43 -51.93 -0.33 0.22 16 39 H 0.07 0.88 6.38 -51.93 -0.33 0.54 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.06 6.43 -51.93 -0.33 0.72 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -27.22 353.14 -9.78 -37.00 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -9.30 Total: 6.02 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -0.85 Total: -25.36 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.07 Total: -39.61 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.22 -9.78 -37.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000474922103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.292 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds