Wall clock time and date at job start Mon Mar 30 2020 07:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47313 * 2 1 4 4 H 1.08998 * 109.47155 * 305.08161 * 3 2 1 5 5 C 1.50690 * 109.47443 * 185.07591 * 3 2 1 6 6 H 1.08003 * 120.00394 * 240.00476 * 5 3 2 7 7 C 1.37877 * 120.00174 * 59.71992 * 5 3 2 8 8 N 1.31520 * 119.99799 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00415 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46899 * 60.00356 * 9 7 5 11 11 H 1.48497 * 109.47252 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47275 * 300.00501 * 9 7 5 13 13 N 1.46899 * 109.46895 * 65.07582 * 3 2 1 14 14 C 1.46899 * 110.99983 * 206.54387 * 13 3 2 15 15 H 1.08996 * 109.47287 * 328.46121 * 14 13 3 16 16 C 1.53003 * 109.47533 * 88.46130 * 14 13 3 17 17 C 1.52999 * 109.47270 * 208.46256 * 14 13 3 18 18 H 1.09002 * 109.47535 * 59.99613 * 17 14 13 19 19 C 1.52999 * 109.47145 * 299.99764 * 17 14 13 20 20 C 1.53006 * 109.47463 * 179.97438 * 17 14 13 21 21 C 1.52999 * 109.46787 * 300.00033 * 20 17 14 22 22 C 1.52998 * 109.47179 * 179.97438 * 21 20 17 23 23 C 1.53008 * 109.46917 * 59.99830 * 22 21 20 24 24 C 1.52999 * 109.46851 * 299.99849 * 23 22 21 25 25 C 1.52996 * 109.47137 * 180.02562 * 20 17 14 26 26 H 1.09000 * 109.47044 * 55.22375 * 1 2 3 27 27 H 1.09002 * 109.47001 * 175.22682 * 1 2 3 28 28 H 1.08996 * 109.47136 * 295.22310 * 1 2 3 29 29 H 1.09000 * 109.47301 * 239.99509 * 2 1 3 30 30 H 1.09007 * 109.46938 * 120.00156 * 2 1 3 31 31 H 0.97001 * 119.99918 * 179.97438 * 8 7 5 32 32 H 1.00899 * 111.00160 * 330.49585 * 13 3 2 33 33 H 1.09003 * 109.47023 * 57.78626 * 16 14 13 34 34 H 1.08998 * 109.47432 * 177.78644 * 16 14 13 35 35 H 1.08996 * 109.46481 * 297.79330 * 16 14 13 36 36 H 1.08999 * 109.47245 * 300.00085 * 19 17 14 37 37 H 1.09000 * 109.47025 * 60.00027 * 19 17 14 38 38 H 1.08998 * 109.47705 * 179.97438 * 19 17 14 39 39 H 1.08999 * 109.46973 * 59.99887 * 20 17 14 40 40 H 1.08999 * 109.47245 * 299.99688 * 21 20 17 41 41 H 1.09006 * 109.47175 * 59.99620 * 21 20 17 42 42 H 1.08999 * 109.46954 * 300.00082 * 22 21 20 43 43 H 1.08996 * 109.47100 * 179.97438 * 22 21 20 44 44 H 1.09000 * 109.46962 * 180.02562 * 23 22 21 45 45 H 1.08999 * 109.47103 * 60.00344 * 23 22 21 46 46 H 1.08991 * 109.47454 * 299.99907 * 24 23 22 47 47 H 1.09002 * 109.46777 * 179.97438 * 24 23 22 48 48 H 1.09002 * 109.46769 * 299.99326 * 25 20 17 49 49 H 1.08999 * 109.47384 * 60.00013 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6043 1.9819 -0.8410 5 6 3.5417 1.4444 -0.1257 6 1 4.1480 1.8885 0.6499 7 6 4.1420 0.8738 -1.2280 8 7 3.4039 0.3284 -2.1701 9 14 6.0035 0.8755 -1.3836 10 1 6.5968 0.1459 -0.2343 11 1 6.3950 0.2068 -2.6504 12 1 6.4984 2.2756 -1.3899 13 7 1.6530 2.0986 1.2560 14 6 1.5384 3.5522 1.0770 15 1 2.2494 3.8822 0.3197 16 6 0.1175 3.9005 0.6287 17 6 1.8417 4.2547 2.4019 18 1 2.8539 4.0067 2.7214 19 6 0.8436 3.7916 3.4650 20 6 1.7229 5.7687 2.2154 21 6 2.7215 6.2314 1.1524 22 6 2.6023 7.7452 0.9654 23 6 2.9053 8.4482 2.2902 24 6 1.9067 7.9855 3.3530 25 6 2.0269 6.4712 3.5401 26 1 -0.3633 0.5862 -0.8441 27 1 -0.3633 -1.0241 -0.0855 28 1 -0.3633 0.4379 0.9296 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8262 -0.0726 -2.9458 32 1 0.7949 1.7101 1.6175 33 1 -0.5962 3.5356 1.3674 34 1 0.0213 4.9820 0.5339 35 1 -0.0846 3.4317 -0.3343 36 1 -0.1686 4.0396 3.1456 37 1 0.9286 2.7130 3.5978 38 1 1.0599 4.2916 4.4090 39 1 0.7109 6.0171 1.8958 40 1 3.7335 5.9830 1.4720 41 1 2.5054 5.7309 0.2085 42 1 1.5902 7.9932 0.6456 43 1 3.3140 8.0749 0.2085 44 1 2.8200 9.5267 2.1571 45 1 3.9174 8.2002 2.6100 46 1 0.8947 8.2335 3.0333 47 1 2.1228 8.4859 4.2969 48 1 1.3158 6.1416 4.2976 49 1 3.0391 6.2227 3.8593 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000474922103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:27 Heat of formation + Delta-G solvation = -59.503170 kcal Electronic energy + Delta-G solvation = -22214.847939 eV Core-core repulsion = 19367.230197 eV Total energy + Delta-G solvation = -2847.617742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46253 -38.36361 -36.10087 -33.94361 -32.50469 -31.61348 -30.02074 -29.30969 -27.93055 -25.55259 -24.62533 -23.30195 -22.65717 -21.43803 -20.67955 -19.65708 -18.28222 -16.97969 -16.60176 -16.29386 -15.69539 -15.39506 -15.08739 -14.84892 -14.63108 -14.43901 -14.28801 -14.12699 -13.55471 -13.37052 -13.21926 -13.12213 -12.99047 -12.79985 -12.75568 -12.56473 -12.53596 -12.09213 -11.96604 -11.91395 -11.87929 -11.67719 -11.52527 -11.35612 -11.32047 -11.19737 -10.93653 -10.66649 -10.49578 -10.40391 -8.84070 -8.04430 -6.16000 1.39636 1.40701 1.48483 2.43784 3.19748 3.60640 3.83049 3.92517 4.03963 4.18102 4.24902 4.41514 4.48754 4.51381 4.54443 4.56679 4.58386 4.65056 4.70429 4.71825 4.72442 4.77183 4.85645 4.89806 5.01032 5.07531 5.14206 5.18229 5.21266 5.24036 5.25790 5.28874 5.33414 5.37606 5.38950 5.43659 5.45672 5.54224 5.55799 5.66275 5.71374 5.77735 5.83729 5.94986 6.41550 6.63859 6.99381 7.12992 7.53186 8.97812 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.005743 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.815151 B = 4874.151408 C = 5888.089338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.229 3.771 4 H -0.033 1.033 5 C -0.506 4.506 6 H 0.045 0.955 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.681 5.681 14 C 0.095 3.905 15 H 0.044 0.956 16 C -0.170 4.170 17 C -0.065 4.065 18 H 0.045 0.955 19 C -0.138 4.138 20 C -0.073 4.073 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.112 4.112 26 H 0.034 0.966 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.259 0.741 32 H 0.326 0.674 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 13.242 10.052 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.121 3.879 4 H -0.016 1.016 5 C -0.545 4.545 6 H 0.063 0.937 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.312 5.312 14 C -0.016 4.016 15 H 0.062 0.938 16 C -0.229 4.229 17 C -0.085 4.085 18 H 0.064 0.936 19 C -0.195 4.195 20 C -0.091 4.091 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.149 4.149 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.743 13.165 10.116 17.568 hybrid contribution 0.502 -0.430 -1.260 1.423 sum -5.241 12.734 8.856 16.373 Atomic orbital electron populations 1.21729 0.96307 1.00972 1.00397 1.21611 0.94191 0.99320 1.01016 1.18863 0.93529 0.90343 0.85203 1.01563 1.21454 0.93056 1.35829 1.04189 0.93660 1.25634 1.01947 0.95515 0.95687 1.69994 1.36124 1.39769 1.10169 0.85742 0.81318 0.78102 0.77229 1.19924 1.20847 1.20205 1.60665 1.37095 1.03100 1.30369 1.21456 0.95101 0.88385 0.96632 0.93814 1.22476 0.97911 1.02189 1.00300 1.21027 0.99030 0.93894 0.94500 0.93613 1.21803 0.98659 1.00978 0.98107 1.21167 0.99182 0.93276 0.95514 1.21614 0.99043 0.96312 0.98643 1.21517 1.01691 0.94289 0.97840 1.21534 0.99265 0.99879 0.94816 1.21529 0.99569 0.95191 0.98925 1.21622 1.01438 0.95302 0.96552 0.94641 0.92546 0.92383 0.91559 0.94734 0.93195 0.85510 0.91167 0.91024 0.95308 0.92087 0.93356 0.91712 0.90589 0.93682 0.93793 0.91622 0.92512 0.91047 0.92748 0.91553 0.91093 0.90805 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.66 71.98 0.70 -4.51 16 2 C -0.12 -5.91 5.35 30.59 0.16 -5.74 16 3 C 0.23 11.67 1.84 44.17 0.08 11.75 16 4 H -0.03 -1.89 7.39 -2.39 -0.02 -1.91 16 5 C -0.51 -28.90 8.60 25.60 0.22 -28.68 16 6 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.01 0.57 5.29 84.65 0.45 1.02 16 8 N -0.92 -54.02 11.27 21.45 0.24 -53.78 16 9 Si 0.95 45.38 29.54 68.60 2.03 47.41 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.68 -28.67 5.50 -473.33 -2.60 -31.27 16 14 C 0.09 3.48 1.86 44.92 0.08 3.57 16 15 H 0.04 1.94 5.94 -2.39 -0.01 1.93 16 16 C -0.17 -5.32 8.46 71.98 0.61 -4.71 16 17 C -0.07 -1.98 1.99 -10.79 -0.02 -2.00 16 18 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 19 C -0.14 -3.51 8.25 71.98 0.59 -2.92 16 20 C -0.07 -1.81 1.43 -10.79 -0.02 -1.83 16 21 C -0.12 -3.30 4.85 30.59 0.15 -3.15 16 22 C -0.12 -2.57 5.92 30.60 0.18 -2.38 16 23 C -0.12 -2.19 5.92 30.60 0.18 -2.01 16 24 C -0.11 -1.99 5.93 30.61 0.18 -1.81 16 25 C -0.11 -2.32 4.85 30.61 0.15 -2.17 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.93 6.60 -2.39 -0.02 1.91 16 29 H 0.07 3.64 5.93 -2.39 -0.01 3.62 16 30 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.33 12.36 5.64 -89.70 -0.51 11.85 16 33 H 0.07 1.91 6.50 -2.39 -0.02 1.90 16 34 H 0.07 1.95 6.31 -2.39 -0.02 1.94 16 35 H 0.03 1.01 7.73 -2.39 -0.02 0.99 16 36 H 0.06 1.38 6.48 -2.39 -0.02 1.36 16 37 H 0.05 1.36 7.30 -2.39 -0.02 1.34 16 38 H 0.06 1.41 6.43 -2.39 -0.02 1.39 16 39 H 0.08 1.79 6.38 -2.39 -0.02 1.78 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.04 1.42 6.43 -2.38 -0.02 1.40 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.07 1.37 6.43 -2.39 -0.02 1.36 16 49 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -60.77 353.14 3.75 -57.03 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.38 Total: 26.21 kcal Atomic # 6 Polarization: -49.29 SS G_CDS: 3.70 Total: -45.60 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.36 Total: -85.05 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -60.77 3.75 -57.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000474922103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.476 kcal (2) G-P(sol) polarization free energy of solvation -60.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds