Wall clock time and date at job start Mon Mar 30 2020 07:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46819 * 2 1 4 4 H 1.09005 * 109.47054 * 174.23496 * 3 2 1 5 5 C 1.50705 * 109.47314 * 54.24342 * 3 2 1 6 6 H 1.07995 * 120.00195 * 240.00224 * 5 3 2 7 7 C 1.37878 * 119.99942 * 59.99419 * 5 3 2 8 8 N 1.31517 * 119.99851 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99924 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47454 * 89.99987 * 9 7 5 11 11 H 1.48497 * 109.46954 * 210.00155 * 9 7 5 12 12 H 1.48501 * 109.46808 * 329.99896 * 9 7 5 13 13 N 1.46892 * 109.47479 * 294.24158 * 3 2 1 14 14 C 1.46901 * 111.00079 * 274.74219 * 13 3 2 15 15 H 1.08998 * 109.47333 * 35.24956 * 14 13 3 16 16 C 1.53008 * 109.46804 * 275.25332 * 14 13 3 17 17 C 1.52992 * 109.47324 * 155.25498 * 14 13 3 18 18 H 1.09000 * 109.47422 * 304.99448 * 17 14 13 19 19 C 1.52999 * 109.47607 * 64.99993 * 17 14 13 20 20 C 1.52999 * 109.47277 * 184.99976 * 17 14 13 21 21 C 1.53001 * 109.47671 * 179.97438 * 20 17 14 22 22 C 1.53003 * 109.47338 * 179.97438 * 21 20 17 23 23 C 1.52992 * 109.47108 * 60.00164 * 22 21 20 24 24 C 1.53009 * 109.46937 * 299.99837 * 23 22 21 25 25 C 1.52997 * 109.47069 * 60.00470 * 24 23 22 26 26 H 1.09004 * 109.46902 * 178.75062 * 1 2 3 27 27 H 1.09001 * 109.47191 * 298.74621 * 1 2 3 28 28 H 1.08997 * 109.47542 * 58.74823 * 1 2 3 29 29 H 1.09000 * 109.47331 * 120.00014 * 2 1 3 30 30 H 1.08998 * 109.47450 * 240.00055 * 2 1 3 31 31 H 0.97003 * 119.99814 * 179.97438 * 8 7 5 32 32 H 1.00905 * 110.99866 * 38.69185 * 13 3 2 33 33 H 1.08994 * 109.46984 * 179.97438 * 16 14 13 34 34 H 1.08998 * 109.46868 * 299.99909 * 16 14 13 35 35 H 1.08995 * 109.46874 * 59.99947 * 16 14 13 36 36 H 1.09003 * 109.47002 * 300.00311 * 19 17 14 37 37 H 1.09000 * 109.47175 * 59.99303 * 19 17 14 38 38 H 1.08996 * 109.47623 * 180.02562 * 19 17 14 39 39 H 1.09000 * 109.47189 * 299.99887 * 20 17 14 40 40 H 1.09000 * 109.46804 * 300.00224 * 21 20 17 41 41 H 1.08995 * 109.46908 * 59.99468 * 21 20 17 42 42 H 1.08998 * 109.46929 * 299.99368 * 22 21 20 43 43 H 1.09002 * 109.46705 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47007 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47875 * 59.99783 * 23 22 21 46 46 H 1.09000 * 109.47004 * 299.99865 * 24 23 22 47 47 H 1.09003 * 109.46666 * 180.02562 * 24 23 22 48 48 H 1.09005 * 109.46970 * 180.02562 * 25 24 23 49 49 H 1.08993 * 109.47620 * 60.00189 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1250 1.4443 0.1032 5 6 1.4245 2.1929 1.1530 6 1 0.8171 3.0661 0.9664 7 6 1.6369 1.7645 2.4462 8 7 2.3769 0.7013 2.6735 9 14 0.8736 2.6942 3.8754 10 1 -0.4677 2.1305 4.1728 11 1 1.7425 2.5622 5.0723 12 1 0.7392 4.1290 3.5171 13 7 1.6670 2.0938 -1.2628 14 6 2.6581 1.8162 -2.3110 15 1 3.0446 0.8047 -2.1869 16 6 3.8089 2.8187 -2.2030 17 6 1.9971 1.9447 -3.6847 18 1 1.1233 1.2947 -3.7298 19 6 1.5657 3.3953 -3.9096 20 6 2.9939 1.5350 -4.7707 21 6 2.3328 1.6629 -6.1446 22 6 3.3299 1.2538 -7.2305 23 6 3.7623 -0.1964 -7.0057 24 6 4.4235 -0.3243 -5.6318 25 6 3.4264 0.0847 -4.5459 26 1 -0.3633 -1.0275 -0.0224 27 1 -0.3633 0.4942 0.9010 28 1 -0.3634 0.5331 -0.8785 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 2.5266 0.4001 3.5834 32 1 0.7430 1.8130 -1.5553 33 1 4.5445 2.6125 -2.9804 34 1 3.4224 3.8303 -2.3270 35 1 4.2798 2.7271 -1.2242 36 1 0.8555 3.6872 -3.1359 37 1 2.4395 4.0454 -3.8645 38 1 1.0944 3.4868 -4.8881 39 1 3.8677 2.1851 -4.7258 40 1 1.4592 1.0126 -6.1892 41 1 2.0251 2.6962 -6.3049 42 1 4.2032 1.9045 -7.1857 43 1 2.8589 1.3454 -8.2093 44 1 4.4730 -0.4877 -7.7791 45 1 2.8890 -0.8472 -7.0506 46 1 5.2969 0.3263 -5.5870 47 1 4.7319 -1.3575 -5.4719 48 1 3.8976 -0.0060 -3.5672 49 1 2.5531 -0.5659 -4.5907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000474922104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:30 Heat of formation + Delta-G solvation = -44.550736 kcal Electronic energy + Delta-G solvation = -22173.136661 eV Core-core repulsion = 19326.167306 eV Total energy + Delta-G solvation = -2846.969355 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.40871 -36.95933 -34.69023 -31.99894 -30.93660 -30.51470 -28.65898 -27.90464 -26.04848 -24.23414 -23.23564 -22.43032 -21.58934 -19.85538 -19.16894 -18.43111 -16.15721 -15.74573 -14.99833 -14.76192 -14.59218 -14.07013 -13.95902 -13.59436 -13.35194 -13.02081 -12.75036 -12.41941 -12.34329 -12.25025 -11.95081 -11.76233 -11.39811 -11.34042 -11.16336 -11.07011 -10.94000 -10.85173 -10.68073 -10.53121 -10.48042 -10.36952 -10.09715 -9.98361 -9.84811 -9.65106 -9.53307 -9.32880 -8.85449 -8.28427 -7.06612 -5.91758 -3.92527 3.35188 3.42107 3.46624 4.48520 4.66359 4.73155 4.78193 5.12374 5.18342 5.28933 5.39245 5.40457 5.47075 5.52870 5.55422 5.63571 5.67850 5.76810 5.84435 5.95875 5.99949 6.04391 6.14800 6.16339 6.20648 6.21835 6.26836 6.30337 6.38939 6.41123 6.41838 6.47829 6.52035 6.62047 6.70871 6.71636 6.77286 6.96486 7.03525 7.36330 7.39815 7.56786 7.77615 7.97379 8.38681 8.67719 8.74691 9.13794 9.71028 11.15322 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032016 B = 0.004405 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.343029 B = 6354.437021 C = 6589.298067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.144 4.144 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.485 4.485 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.679 5.679 14 C 0.087 3.913 15 H 0.036 0.964 16 C -0.137 4.137 17 C -0.085 4.085 18 H 0.060 0.940 19 C -0.141 4.141 20 C -0.079 4.079 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.009 0.991 31 H 0.258 0.742 32 H 0.324 0.676 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.698 -0.543 -17.230 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.310 5.310 14 C -0.023 4.023 15 H 0.054 0.946 16 C -0.195 4.195 17 C -0.104 4.104 18 H 0.079 0.921 19 C -0.198 4.198 20 C -0.098 4.098 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.156 4.156 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.143 0.857 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.049 -0.029 -16.895 17.019 hybrid contribution -0.580 -0.642 0.716 1.123 sum 1.469 -0.671 -16.179 16.259 Atomic orbital electron populations 1.21556 0.97806 0.97852 1.01181 1.22097 0.94899 1.01395 0.99996 1.19199 0.95901 0.88365 0.85706 0.94999 1.21089 1.30128 1.11346 0.89792 0.92167 1.24908 0.95650 0.95204 0.98659 1.69891 1.39370 1.24252 1.20223 0.86612 0.78944 0.80400 0.82126 1.20960 1.21516 1.19969 1.60877 1.03488 1.63159 1.03508 1.21468 0.93846 0.96817 0.90177 0.94587 1.21849 0.97094 0.99884 1.00651 1.21311 0.97442 0.97188 0.94454 0.92123 1.21838 1.01551 0.95949 1.00489 1.21193 0.98370 0.96353 0.93860 1.21642 0.98028 1.01216 0.94363 1.21530 0.99287 0.96477 0.98319 1.21531 1.00166 0.96873 0.97045 1.21533 0.98474 1.00876 0.94748 1.21661 0.98912 0.96304 0.98677 0.96081 0.91605 0.95205 0.89158 0.97227 0.93260 0.85745 0.93990 0.92294 0.92806 0.91663 0.92648 0.93867 0.91039 0.92341 0.91792 0.92224 0.92552 0.92607 0.92251 0.92207 0.92402 0.91361 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.39 37.16 0.35 -2.38 16 2 C -0.14 -3.39 5.48 -26.73 -0.15 -3.54 16 3 C 0.22 5.30 2.14 -68.87 -0.15 5.15 16 4 H 0.03 0.88 7.09 -51.93 -0.37 0.51 16 5 C -0.48 -13.10 7.35 -34.44 -0.25 -13.36 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.53 5.23 -17.82 -0.09 1.44 16 8 N -0.90 -25.47 11.39 55.43 0.63 -24.84 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -14.01 5.49 -100.95 -0.55 -14.57 16 14 C 0.09 1.52 1.97 -67.71 -0.13 1.38 16 15 H 0.04 0.68 5.15 -51.93 -0.27 0.41 16 16 C -0.14 -2.33 8.66 37.16 0.32 -2.00 16 17 C -0.09 -1.20 1.68 -90.62 -0.15 -1.35 16 18 H 0.06 0.89 8.02 -51.93 -0.42 0.48 16 19 C -0.14 -1.91 8.24 37.16 0.31 -1.61 16 20 C -0.08 -0.96 1.53 -90.62 -0.14 -1.09 16 21 C -0.12 -1.22 4.85 -26.73 -0.13 -1.35 16 22 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 23 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 24 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 25 C -0.12 -1.45 4.86 -26.73 -0.13 -1.58 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.56 7.05 -51.93 -0.37 1.19 16 28 H 0.03 0.58 6.42 -51.93 -0.33 0.25 16 29 H 0.09 2.39 6.25 -51.93 -0.32 2.07 16 30 H 0.01 0.20 7.39 -51.93 -0.38 -0.18 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.32 6.50 6.14 -39.29 -0.24 6.26 16 33 H 0.04 0.61 6.57 -51.93 -0.34 0.27 16 34 H 0.06 0.99 6.34 -51.93 -0.33 0.66 16 35 H 0.05 1.04 7.41 -51.93 -0.38 0.65 16 36 H 0.06 0.99 7.75 -51.93 -0.40 0.58 16 37 H 0.05 0.75 6.34 -51.93 -0.33 0.42 16 38 H 0.04 0.51 6.43 -51.93 -0.33 0.17 16 39 H 0.07 0.90 6.57 -51.93 -0.34 0.56 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.95 6.32 -51.93 -0.33 0.62 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -26.95 349.96 -9.67 -36.62 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -9.17 Total: 5.30 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -0.82 Total: -24.26 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.08 Total: -39.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.95 -9.67 -36.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000474922104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.935 kcal (2) G-P(sol) polarization free energy of solvation -26.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds