Wall clock time and date at job start Mon Mar 30 2020 07:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46819 * 2 1 4 4 H 1.09005 * 109.47054 * 174.23496 * 3 2 1 5 5 C 1.50705 * 109.47314 * 54.24342 * 3 2 1 6 6 H 1.07995 * 120.00195 * 240.00224 * 5 3 2 7 7 C 1.37878 * 119.99942 * 59.99419 * 5 3 2 8 8 N 1.31517 * 119.99851 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99924 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47454 * 89.99987 * 9 7 5 11 11 H 1.48497 * 109.46954 * 210.00155 * 9 7 5 12 12 H 1.48501 * 109.46808 * 329.99896 * 9 7 5 13 13 N 1.46892 * 109.47479 * 294.24158 * 3 2 1 14 14 C 1.46901 * 111.00079 * 274.74219 * 13 3 2 15 15 H 1.08998 * 109.47333 * 35.24956 * 14 13 3 16 16 C 1.53008 * 109.46804 * 275.25332 * 14 13 3 17 17 C 1.52992 * 109.47324 * 155.25498 * 14 13 3 18 18 H 1.09000 * 109.47422 * 304.99448 * 17 14 13 19 19 C 1.52999 * 109.47607 * 64.99993 * 17 14 13 20 20 C 1.52999 * 109.47277 * 184.99976 * 17 14 13 21 21 C 1.53001 * 109.47671 * 179.97438 * 20 17 14 22 22 C 1.53003 * 109.47338 * 179.97438 * 21 20 17 23 23 C 1.52992 * 109.47108 * 60.00164 * 22 21 20 24 24 C 1.53009 * 109.46937 * 299.99837 * 23 22 21 25 25 C 1.52997 * 109.47069 * 60.00470 * 24 23 22 26 26 H 1.09004 * 109.46902 * 178.75062 * 1 2 3 27 27 H 1.09001 * 109.47191 * 298.74621 * 1 2 3 28 28 H 1.08997 * 109.47542 * 58.74823 * 1 2 3 29 29 H 1.09000 * 109.47331 * 120.00014 * 2 1 3 30 30 H 1.08998 * 109.47450 * 240.00055 * 2 1 3 31 31 H 0.97003 * 119.99814 * 179.97438 * 8 7 5 32 32 H 1.00905 * 110.99866 * 38.69185 * 13 3 2 33 33 H 1.08994 * 109.46984 * 179.97438 * 16 14 13 34 34 H 1.08998 * 109.46868 * 299.99909 * 16 14 13 35 35 H 1.08995 * 109.46874 * 59.99947 * 16 14 13 36 36 H 1.09003 * 109.47002 * 300.00311 * 19 17 14 37 37 H 1.09000 * 109.47175 * 59.99303 * 19 17 14 38 38 H 1.08996 * 109.47623 * 180.02562 * 19 17 14 39 39 H 1.09000 * 109.47189 * 299.99887 * 20 17 14 40 40 H 1.09000 * 109.46804 * 300.00224 * 21 20 17 41 41 H 1.08995 * 109.46908 * 59.99468 * 21 20 17 42 42 H 1.08998 * 109.46929 * 299.99368 * 22 21 20 43 43 H 1.09002 * 109.46705 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47007 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47875 * 59.99783 * 23 22 21 46 46 H 1.09000 * 109.47004 * 299.99865 * 24 23 22 47 47 H 1.09003 * 109.46666 * 180.02562 * 24 23 22 48 48 H 1.09005 * 109.46970 * 180.02562 * 25 24 23 49 49 H 1.08993 * 109.47620 * 60.00189 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1250 1.4443 0.1032 5 6 1.4245 2.1929 1.1530 6 1 0.8171 3.0661 0.9664 7 6 1.6369 1.7645 2.4462 8 7 2.3769 0.7013 2.6735 9 14 0.8736 2.6942 3.8754 10 1 -0.4677 2.1305 4.1728 11 1 1.7425 2.5622 5.0723 12 1 0.7392 4.1290 3.5171 13 7 1.6670 2.0938 -1.2628 14 6 2.6581 1.8162 -2.3110 15 1 3.0446 0.8047 -2.1869 16 6 3.8089 2.8187 -2.2030 17 6 1.9971 1.9447 -3.6847 18 1 1.1233 1.2947 -3.7298 19 6 1.5657 3.3953 -3.9096 20 6 2.9939 1.5350 -4.7707 21 6 2.3328 1.6629 -6.1446 22 6 3.3299 1.2538 -7.2305 23 6 3.7623 -0.1964 -7.0057 24 6 4.4235 -0.3243 -5.6318 25 6 3.4264 0.0847 -4.5459 26 1 -0.3633 -1.0275 -0.0224 27 1 -0.3633 0.4942 0.9010 28 1 -0.3634 0.5331 -0.8785 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 2.5266 0.4001 3.5834 32 1 0.7430 1.8130 -1.5553 33 1 4.5445 2.6125 -2.9804 34 1 3.4224 3.8303 -2.3270 35 1 4.2798 2.7271 -1.2242 36 1 0.8555 3.6872 -3.1359 37 1 2.4395 4.0454 -3.8645 38 1 1.0944 3.4868 -4.8881 39 1 3.8677 2.1851 -4.7258 40 1 1.4592 1.0126 -6.1892 41 1 2.0251 2.6962 -6.3049 42 1 4.2032 1.9045 -7.1857 43 1 2.8589 1.3454 -8.2093 44 1 4.4730 -0.4877 -7.7791 45 1 2.8890 -0.8472 -7.0506 46 1 5.2969 0.3263 -5.5870 47 1 4.7319 -1.3575 -5.4719 48 1 3.8976 -0.0060 -3.5672 49 1 2.5531 -0.5659 -4.5907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000474922104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:29 Heat of formation + Delta-G solvation = -57.408658 kcal Electronic energy + Delta-G solvation = -22173.694223 eV Core-core repulsion = 19326.167306 eV Total energy + Delta-G solvation = -2847.526917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51137 -38.41983 -36.19278 -33.81569 -32.28352 -31.60614 -29.95525 -29.24247 -27.99048 -25.56398 -25.00082 -23.34488 -22.75814 -21.04662 -20.62190 -19.80985 -18.10941 -16.99063 -16.67573 -16.21615 -16.01868 -15.24362 -14.96092 -14.75410 -14.69117 -14.45866 -14.34106 -13.96065 -13.84293 -13.41554 -13.23305 -12.97348 -12.87388 -12.77326 -12.59318 -12.50807 -12.42018 -12.12154 -12.01898 -11.98331 -11.90407 -11.59795 -11.52967 -11.45228 -11.25680 -11.14170 -10.92949 -10.71728 -10.50988 -10.40399 -8.80038 -8.02938 -6.10778 1.42399 1.43968 1.53899 2.46930 3.25811 3.60114 3.79684 3.86518 3.99234 4.10874 4.23460 4.44235 4.45412 4.51119 4.54637 4.58714 4.61169 4.67047 4.71774 4.75087 4.76518 4.82241 4.83773 4.94989 5.00036 5.07383 5.09745 5.13565 5.22620 5.24240 5.28398 5.31621 5.37407 5.39212 5.42319 5.46219 5.48803 5.54172 5.57545 5.66808 5.70158 5.76117 5.77050 5.91436 6.37803 6.78209 6.96620 7.06272 7.57333 9.02440 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.032016 B = 0.004405 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.343029 B = 6354.437021 C = 6589.298067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.137 4.137 3 C 0.225 3.775 4 H -0.006 1.006 5 C -0.495 4.495 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.679 5.679 14 C 0.087 3.913 15 H 0.021 0.979 16 C -0.130 4.130 17 C -0.076 4.076 18 H 0.058 0.942 19 C -0.137 4.137 20 C -0.072 4.072 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.118 4.118 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.257 0.743 32 H 0.328 0.672 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.045 0.955 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -0.091 -19.287 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.176 4.176 3 C 0.116 3.884 4 H 0.012 0.988 5 C -0.534 4.534 6 H 0.069 0.931 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.311 5.311 14 C -0.022 4.022 15 H 0.038 0.962 16 C -0.188 4.188 17 C -0.095 4.095 18 H 0.076 0.924 19 C -0.194 4.194 20 C -0.091 4.091 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.155 4.155 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.064 0.936 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.343 0.428 -18.968 19.020 hybrid contribution -0.319 -0.796 1.333 1.585 sum 1.024 -0.368 -17.635 17.669 Atomic orbital electron populations 1.21433 0.95960 0.99183 1.00847 1.21937 0.96446 1.00350 0.98916 1.18900 0.93330 0.89115 0.87042 0.98844 1.21308 1.29972 1.11202 0.90953 0.93071 1.25589 0.96070 0.95935 1.00962 1.70027 1.40354 1.25404 1.20545 0.85689 0.78299 0.79258 0.79172 1.20222 1.21398 1.19677 1.60768 1.04436 1.62692 1.03186 1.21532 0.93446 0.96029 0.91236 0.96158 1.21791 0.97361 0.99973 0.99661 1.21225 0.97553 0.97863 0.92858 0.92402 1.21794 1.01282 0.95102 1.01179 1.21128 0.97790 0.95969 0.94225 1.21611 0.98166 1.01724 0.93389 1.21525 0.99119 0.96274 0.98485 1.21526 1.00371 0.97086 0.96443 1.21520 0.98053 1.01007 0.94888 1.21630 0.99062 0.96540 0.98294 0.94026 0.93986 0.93248 0.92359 0.96076 0.93379 0.85252 0.91465 0.91953 0.96035 0.93453 0.92550 0.91515 0.91113 0.92423 0.91061 0.91965 0.91111 0.91263 0.92315 0.92045 0.92203 0.93604 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.39 71.98 0.68 -4.29 16 2 C -0.14 -6.55 5.48 30.59 0.17 -6.38 16 3 C 0.23 11.36 2.14 44.17 0.09 11.45 16 4 H -0.01 -0.37 7.09 -2.38 -0.02 -0.38 16 5 C -0.50 -27.33 7.35 25.60 0.19 -27.14 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.01 0.68 5.23 84.65 0.44 1.12 16 8 N -0.92 -53.67 11.39 21.45 0.24 -53.43 16 9 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.68 -28.36 5.49 -473.31 -2.60 -30.96 16 14 C 0.09 3.06 1.97 44.92 0.09 3.15 16 15 H 0.02 0.79 5.15 -2.39 -0.01 0.78 16 16 C -0.13 -4.45 8.66 71.98 0.62 -3.83 16 17 C -0.08 -2.05 1.68 -10.80 -0.02 -2.07 16 18 H 0.06 1.62 8.02 -2.39 -0.02 1.60 16 19 C -0.14 -3.44 8.24 71.98 0.59 -2.85 16 20 C -0.07 -1.62 1.53 -10.79 -0.02 -1.64 16 21 C -0.11 -2.04 4.85 30.60 0.15 -1.89 16 22 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 23 C -0.12 -1.90 5.92 30.59 0.18 -1.72 16 24 C -0.12 -2.27 5.92 30.60 0.18 -2.09 16 25 C -0.12 -2.79 4.86 30.59 0.15 -2.64 16 26 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.04 1.97 7.05 -2.39 -0.02 1.96 16 28 H 0.05 1.87 6.42 -2.39 -0.02 1.86 16 29 H 0.06 3.18 6.25 -2.39 -0.01 3.17 16 30 H 0.02 0.93 7.39 -2.39 -0.02 0.91 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.33 13.06 6.14 -89.69 -0.55 12.51 16 33 H 0.07 1.92 6.57 -2.39 -0.02 1.91 16 34 H 0.06 2.07 6.34 -2.39 -0.02 2.05 16 35 H 0.02 0.84 7.41 -2.39 -0.02 0.82 16 36 H 0.05 1.36 7.75 -2.39 -0.02 1.35 16 37 H 0.06 1.41 6.34 -2.39 -0.02 1.39 16 38 H 0.07 1.37 6.43 -2.39 -0.02 1.36 16 39 H 0.07 1.62 6.57 -2.39 -0.02 1.61 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.22 6.43 -2.39 -0.02 1.20 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.05 1.28 6.32 -2.38 -0.02 1.26 16 49 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -58.72 349.96 3.70 -55.02 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.35 Total: 25.31 kcal Atomic # 6 Polarization: -46.16 SS G_CDS: 3.68 Total: -42.48 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.36 Total: -84.38 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -58.72 3.70 -55.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000474922104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.386 kcal (2) G-P(sol) polarization free energy of solvation -58.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds