Wall clock time and date at job start Mon Mar 30 2020 08:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46859 * 2 1 4 4 C 1.52998 * 109.47261 * 119.99922 * 2 1 3 5 5 H 1.08993 * 109.47383 * 55.37210 * 4 2 1 6 6 C 1.53004 * 109.47107 * 295.37284 * 4 2 1 7 7 C 1.53007 * 109.47012 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46983 * 59.99835 * 7 6 4 9 9 H 1.09002 * 109.47115 * 59.99958 * 8 7 6 10 10 N 1.46898 * 109.46687 * 180.02562 * 8 7 6 11 11 C 1.46902 * 111.00061 * 274.99935 * 10 8 7 12 12 C 1.52998 * 109.47126 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47189 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47349 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99588 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00052 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99899 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99793 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47097 * 60.00477 * 18 16 14 20 20 H 1.48504 * 109.46625 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47178 * 300.00040 * 18 16 14 22 22 C 1.52995 * 109.47260 * 299.99807 * 8 7 6 23 23 C 1.52996 * 109.47057 * 175.37351 * 4 2 1 24 24 H 1.09001 * 109.47568 * 60.00126 * 23 4 2 25 25 C 1.53004 * 109.47108 * 299.99933 * 23 4 2 26 26 H 1.08994 * 109.47279 * 65.83928 * 1 2 3 27 27 H 1.09002 * 109.47236 * 185.84196 * 1 2 3 28 28 H 1.09002 * 109.47039 * 305.84283 * 1 2 3 29 29 H 1.08999 * 109.46932 * 240.00426 * 2 1 3 30 30 H 1.08997 * 109.46761 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47184 * 299.99722 * 3 2 1 32 32 H 1.08999 * 109.47083 * 59.99917 * 3 2 1 33 33 H 1.09001 * 109.47064 * 299.99595 * 6 4 2 34 34 H 1.08996 * 109.47242 * 59.99651 * 6 4 2 35 35 H 1.09001 * 109.46752 * 299.99635 * 7 6 4 36 36 H 1.09002 * 109.46488 * 179.97438 * 7 6 4 37 37 H 1.00898 * 111.00430 * 38.95594 * 10 8 7 38 38 H 1.09007 * 109.46947 * 300.00135 * 11 10 8 39 39 H 1.08996 * 109.47312 * 60.00058 * 11 10 8 40 40 H 1.08994 * 109.47112 * 300.00038 * 12 11 10 41 41 H 1.09002 * 109.47357 * 60.00431 * 12 11 10 42 42 H 1.08998 * 109.46733 * 299.99954 * 13 12 11 43 43 H 1.08996 * 109.47223 * 59.99930 * 13 12 11 44 44 H 0.97002 * 119.99525 * 180.02562 * 17 16 14 45 45 H 1.09002 * 109.47504 * 180.02562 * 22 8 7 46 46 H 1.09001 * 109.47232 * 300.00663 * 22 8 7 47 47 H 1.09002 * 109.47180 * 306.29919 * 25 23 4 48 48 H 1.09000 * 109.47236 * 66.29732 * 25 23 4 49 49 H 1.08997 * 109.47124 * 186.30018 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6106 -1.7221 1.2917 6 6 1.6273 0.0641 2.4958 7 6 2.1379 -0.6568 3.7450 8 6 3.6635 -0.7578 3.6878 9 1 4.0926 0.2433 3.6451 10 7 4.1536 -1.4505 4.8869 11 6 4.3206 -0.5128 6.0052 12 6 4.8318 -1.2692 7.2330 13 6 5.0063 -0.2925 8.3977 14 6 5.5104 -1.0374 9.6068 15 1 5.6880 -2.1012 9.5504 16 6 5.7448 -0.3608 10.7851 17 7 5.5280 0.9345 10.8539 18 14 6.3689 -1.2844 12.2842 19 1 7.6748 -1.9167 11.9677 20 1 6.5384 -0.3363 13.4145 21 1 5.3892 -2.3343 12.6621 22 6 4.0762 -1.5432 2.4413 23 6 3.5656 -0.8227 1.1924 24 1 3.9951 0.1782 1.1499 25 6 3.9783 -1.6081 -0.0542 26 1 -0.3633 0.4206 -0.9376 27 1 -0.3634 -1.0223 0.1046 28 1 -0.3633 0.6018 0.8331 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.0568 1.0650 2.4534 34 1 0.5405 0.1365 2.5363 35 1 1.7087 -1.6579 3.7876 36 1 1.8442 -0.0970 4.6330 37 1 3.5411 -2.2110 5.1410 38 1 5.0397 0.2583 5.7286 39 1 3.3618 -0.0491 6.2369 40 1 4.1131 -2.0405 7.5098 41 1 5.7908 -1.7326 7.0011 42 1 5.7253 0.4785 8.1206 43 1 4.0477 0.1713 8.6298 44 1 5.6932 1.4105 11.6828 45 1 5.1631 -1.6155 2.4007 46 1 3.6471 -2.5442 2.4839 47 1 3.4602 -2.5670 -0.0676 48 1 3.7138 -1.0397 -0.9459 49 1 5.0550 -1.7770 -0.0372 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536302373.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:03 Heat of formation + Delta-G solvation = -57.793059 kcal Electronic energy + Delta-G solvation = -20940.590153 eV Core-core repulsion = 18093.046567 eV Total energy + Delta-G solvation = -2847.543586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.97331 -36.76428 -34.44999 -33.23165 -32.25696 -30.80633 -28.37591 -27.44747 -26.37177 -25.65698 -23.19020 -22.31256 -21.15085 -20.64696 -19.79938 -18.93267 -16.28228 -15.69789 -15.49138 -14.91519 -14.71857 -14.59580 -14.43008 -14.24904 -13.62562 -13.33748 -13.10508 -12.86569 -12.63832 -12.28382 -12.21627 -12.02834 -11.86403 -11.85637 -11.50941 -11.40800 -11.30692 -11.22197 -10.82607 -10.74208 -10.72416 -10.54485 -10.48818 -10.42265 -10.04778 -9.98963 -9.64142 -9.26576 -9.01461 -8.30825 -8.02641 -5.96184 -3.98177 3.36084 3.39909 3.42889 4.29921 4.47423 4.50017 4.52150 4.67375 4.87031 4.93354 5.08277 5.13272 5.17618 5.31217 5.34457 5.39437 5.43425 5.44054 5.49970 5.58872 5.59649 5.67689 5.72357 5.73859 5.77996 5.84306 5.87677 5.94789 5.95651 5.97423 6.11125 6.12393 6.16147 6.17329 6.27253 6.38664 6.41012 6.46075 6.78286 6.85088 7.18837 7.45248 7.71511 7.73823 7.88472 8.04601 8.48082 9.08938 9.65548 11.15297 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.040263 B = 0.002820 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.267000 B = 9925.919376 C =10223.505674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.075 4.075 5 H 0.067 0.933 6 C -0.112 4.112 7 C -0.149 4.149 8 C 0.088 3.912 9 H 0.073 0.927 10 N -0.688 5.688 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.023 3.977 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.100 4.100 23 C -0.088 4.088 24 H 0.071 0.929 25 C -0.147 4.147 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.336 0.664 38 H 0.065 0.935 39 H 0.023 0.977 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.260 0.740 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.861 -1.976 -24.108 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.094 4.094 5 H 0.086 0.914 6 C -0.150 4.150 7 C -0.189 4.189 8 C -0.023 4.023 9 H 0.091 0.909 10 N -0.317 5.317 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.138 4.138 23 C -0.107 4.107 24 H 0.089 0.911 25 C -0.204 4.204 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.154 0.846 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.173 -1.790 -24.155 25.563 hybrid contribution -0.659 -0.229 1.213 1.399 sum -8.832 -2.019 -22.942 24.666 Atomic orbital electron populations 1.21885 0.95603 1.01608 1.01490 1.21183 0.95371 0.96427 0.98246 1.21952 1.01259 0.96081 1.01578 1.21225 0.95137 0.98971 0.94031 0.91428 1.21621 1.00347 0.99288 0.93772 1.22292 0.97569 1.00819 0.98175 1.21569 0.92063 0.97761 0.90883 0.90890 1.60660 1.53558 1.12431 1.05017 1.22134 0.98980 0.94960 0.90802 1.21621 0.99944 0.98987 0.93953 1.19056 0.96843 0.94171 0.91438 1.21234 1.43827 0.94737 0.95925 0.92740 1.25031 0.95746 0.94869 0.98886 1.69959 1.49270 1.07471 1.26975 0.86656 0.79445 0.79553 0.82341 1.20212 1.21320 1.20279 1.21544 1.01090 0.98702 0.92460 1.21179 0.94979 0.99720 0.94787 0.91074 1.21859 1.01147 1.00000 0.97388 0.93098 0.92880 0.92519 0.91097 0.92414 0.93233 0.92274 0.91647 0.92105 0.92097 0.92052 0.84628 0.91679 0.95857 0.93757 0.92630 0.96631 0.96878 0.93006 0.91409 0.92267 0.92884 0.92728 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.79 37.16 0.33 -0.73 16 2 C -0.09 -0.70 2.47 -90.62 -0.22 -0.93 16 3 C -0.15 -1.14 8.46 37.16 0.31 -0.82 16 4 C -0.08 -0.64 1.50 -90.62 -0.14 -0.77 16 5 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 6 C -0.11 -1.06 4.48 -26.73 -0.12 -1.18 16 7 C -0.15 -1.67 5.17 -26.73 -0.14 -1.81 16 8 C 0.09 1.09 2.47 -67.72 -0.17 0.92 16 9 H 0.07 0.98 7.80 -51.93 -0.41 0.57 16 10 N -0.69 -10.28 6.25 -106.73 -0.67 -10.95 16 11 C 0.06 1.07 5.48 -3.82 -0.02 1.05 16 12 C -0.11 -2.29 5.41 -26.73 -0.14 -2.43 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 15 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 C -0.10 -1.08 4.81 -26.76 -0.13 -1.21 16 23 C -0.09 -0.79 1.99 -90.64 -0.18 -0.97 16 24 H 0.07 0.67 6.55 -51.93 -0.34 0.33 16 25 C -0.15 -1.16 8.66 37.16 0.32 -0.84 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.42 6.85 -51.93 -0.36 0.06 16 29 H 0.07 0.52 6.33 -51.93 -0.33 0.19 16 30 H 0.06 0.44 6.55 -51.93 -0.34 0.10 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.46 6.35 -51.93 -0.33 0.13 16 33 H 0.06 0.63 6.35 -51.93 -0.33 0.30 16 34 H 0.06 0.55 6.69 -51.93 -0.35 0.20 16 35 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.06 0.77 7.45 -51.93 -0.39 0.38 16 37 H 0.34 4.79 8.47 -39.29 -0.33 4.46 16 38 H 0.06 1.20 8.06 -51.92 -0.42 0.78 16 39 H 0.02 0.42 7.44 -51.93 -0.39 0.03 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 0.39 6.68 -51.93 -0.35 0.04 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -29.62 363.08 -10.01 -39.64 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -9.68 Total: -1.30 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.85 Total: -23.14 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.07 Total: -37.71 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.62 -10.01 -39.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536302373.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.157 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds