Wall clock time and date at job start Mon Mar 30 2020 08:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46859 * 2 1 4 4 C 1.52998 * 109.47261 * 119.99922 * 2 1 3 5 5 H 1.08993 * 109.47383 * 55.37210 * 4 2 1 6 6 C 1.53004 * 109.47107 * 295.37284 * 4 2 1 7 7 C 1.53007 * 109.47012 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46983 * 59.99835 * 7 6 4 9 9 H 1.09002 * 109.47115 * 59.99958 * 8 7 6 10 10 N 1.46898 * 109.46687 * 180.02562 * 8 7 6 11 11 C 1.46902 * 111.00061 * 274.99935 * 10 8 7 12 12 C 1.52998 * 109.47126 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47189 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47349 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99588 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00052 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99899 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99793 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47097 * 60.00477 * 18 16 14 20 20 H 1.48504 * 109.46625 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47178 * 300.00040 * 18 16 14 22 22 C 1.52995 * 109.47260 * 299.99807 * 8 7 6 23 23 C 1.52996 * 109.47057 * 175.37351 * 4 2 1 24 24 H 1.09001 * 109.47568 * 60.00126 * 23 4 2 25 25 C 1.53004 * 109.47108 * 299.99933 * 23 4 2 26 26 H 1.08994 * 109.47279 * 65.83928 * 1 2 3 27 27 H 1.09002 * 109.47236 * 185.84196 * 1 2 3 28 28 H 1.09002 * 109.47039 * 305.84283 * 1 2 3 29 29 H 1.08999 * 109.46932 * 240.00426 * 2 1 3 30 30 H 1.08997 * 109.46761 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47184 * 299.99722 * 3 2 1 32 32 H 1.08999 * 109.47083 * 59.99917 * 3 2 1 33 33 H 1.09001 * 109.47064 * 299.99595 * 6 4 2 34 34 H 1.08996 * 109.47242 * 59.99651 * 6 4 2 35 35 H 1.09001 * 109.46752 * 299.99635 * 7 6 4 36 36 H 1.09002 * 109.46488 * 179.97438 * 7 6 4 37 37 H 1.00898 * 111.00430 * 38.95594 * 10 8 7 38 38 H 1.09007 * 109.46947 * 300.00135 * 11 10 8 39 39 H 1.08996 * 109.47312 * 60.00058 * 11 10 8 40 40 H 1.08994 * 109.47112 * 300.00038 * 12 11 10 41 41 H 1.09002 * 109.47357 * 60.00431 * 12 11 10 42 42 H 1.08998 * 109.46733 * 299.99954 * 13 12 11 43 43 H 1.08996 * 109.47223 * 59.99930 * 13 12 11 44 44 H 0.97002 * 119.99525 * 180.02562 * 17 16 14 45 45 H 1.09002 * 109.47504 * 180.02562 * 22 8 7 46 46 H 1.09001 * 109.47232 * 300.00663 * 22 8 7 47 47 H 1.09002 * 109.47180 * 306.29919 * 25 23 4 48 48 H 1.09000 * 109.47236 * 66.29732 * 25 23 4 49 49 H 1.08997 * 109.47124 * 186.30018 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6106 -1.7221 1.2917 6 6 1.6273 0.0641 2.4958 7 6 2.1379 -0.6568 3.7450 8 6 3.6635 -0.7578 3.6878 9 1 4.0926 0.2433 3.6451 10 7 4.1536 -1.4505 4.8869 11 6 4.3206 -0.5128 6.0052 12 6 4.8318 -1.2692 7.2330 13 6 5.0063 -0.2925 8.3977 14 6 5.5104 -1.0374 9.6068 15 1 5.6880 -2.1012 9.5504 16 6 5.7448 -0.3608 10.7851 17 7 5.5280 0.9345 10.8539 18 14 6.3689 -1.2844 12.2842 19 1 7.6748 -1.9167 11.9677 20 1 6.5384 -0.3363 13.4145 21 1 5.3892 -2.3343 12.6621 22 6 4.0762 -1.5432 2.4413 23 6 3.5656 -0.8227 1.1924 24 1 3.9951 0.1782 1.1499 25 6 3.9783 -1.6081 -0.0542 26 1 -0.3633 0.4206 -0.9376 27 1 -0.3634 -1.0223 0.1046 28 1 -0.3633 0.6018 0.8331 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.0568 1.0650 2.4534 34 1 0.5405 0.1365 2.5363 35 1 1.7087 -1.6579 3.7876 36 1 1.8442 -0.0970 4.6330 37 1 3.5411 -2.2110 5.1410 38 1 5.0397 0.2583 5.7286 39 1 3.3618 -0.0491 6.2369 40 1 4.1131 -2.0405 7.5098 41 1 5.7908 -1.7326 7.0011 42 1 5.7253 0.4785 8.1206 43 1 4.0477 0.1713 8.6298 44 1 5.6932 1.4105 11.6828 45 1 5.1631 -1.6155 2.4007 46 1 3.6471 -2.5442 2.4839 47 1 3.4602 -2.5670 -0.0676 48 1 3.7138 -1.0397 -0.9459 49 1 5.0550 -1.7770 -0.0372 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536302373.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:03 Heat of formation + Delta-G solvation = -73.180643 kcal Electronic energy + Delta-G solvation = -20941.257408 eV Core-core repulsion = 18093.046567 eV Total energy + Delta-G solvation = -2848.210841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78895 -37.91746 -35.96113 -34.64229 -33.48972 -32.24895 -29.62040 -28.02250 -27.49961 -27.00295 -24.52051 -23.60842 -22.13168 -21.99277 -21.07506 -19.63498 -18.48389 -16.72639 -16.62089 -16.39477 -15.89089 -15.70113 -15.45272 -15.26860 -14.79555 -14.35640 -14.19186 -13.96410 -13.70445 -13.58314 -13.44022 -13.19376 -12.86516 -12.81089 -12.66495 -12.54249 -12.48467 -12.38759 -12.18782 -12.11142 -11.98237 -11.67021 -11.53992 -11.47049 -11.39157 -11.18135 -11.09950 -10.80490 -10.66165 -10.55844 -9.26220 -8.20806 -6.32259 1.39324 1.42964 1.50897 2.40577 3.12030 3.20138 3.71278 3.78779 3.91919 4.04252 4.12204 4.23219 4.36146 4.39114 4.40458 4.47166 4.49615 4.57203 4.66571 4.71520 4.75392 4.79393 4.86516 4.89930 4.93848 4.97995 5.05735 5.08358 5.11908 5.12812 5.17309 5.21097 5.21859 5.26145 5.31052 5.38240 5.43673 5.46370 5.51323 5.54787 5.62996 5.72961 5.74030 5.84665 6.12907 6.27342 6.52969 6.84465 7.37006 8.91073 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.040263 B = 0.002820 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.267000 B = 9925.919376 C =10223.505674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.152 4.152 4 C -0.070 4.070 5 H 0.068 0.932 6 C -0.108 4.108 7 C -0.144 4.144 8 C 0.088 3.912 9 H 0.061 0.939 10 N -0.688 5.688 11 C 0.074 3.926 12 C -0.092 4.092 13 C 0.026 3.974 14 C -0.545 4.545 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.266 1.266 22 C -0.093 4.093 23 C -0.083 4.083 24 H 0.067 0.933 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.342 0.658 38 H 0.056 0.944 39 H 0.021 0.979 40 H 0.050 0.950 41 H 0.051 0.949 42 H -0.010 1.010 43 H -0.010 1.010 44 H 0.264 0.736 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.230 -3.215 -25.082 26.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.209 4.209 4 C -0.088 4.088 5 H 0.087 0.913 6 C -0.146 4.146 7 C -0.183 4.183 8 C -0.022 4.022 9 H 0.080 0.920 10 N -0.318 5.318 11 C -0.055 4.055 12 C -0.130 4.130 13 C -0.011 4.011 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.131 4.131 23 C -0.102 4.102 24 H 0.085 0.915 25 C -0.201 4.201 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.161 0.839 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.549 -3.040 -25.153 26.740 hybrid contribution -0.553 0.192 1.493 1.604 sum -9.102 -2.848 -23.660 25.510 Atomic orbital electron populations 1.21878 0.95190 1.01730 1.01731 1.21154 0.95672 0.96224 0.97783 1.21949 1.01093 0.96167 1.01658 1.21174 0.94652 0.98943 0.94036 0.91349 1.21593 1.00678 0.99006 0.93344 1.22217 0.96486 1.01133 0.98502 1.21622 0.92928 0.97247 0.90383 0.92043 1.60607 1.54434 1.12129 1.04624 1.21814 0.98402 0.94754 0.90510 1.21374 1.00112 0.97987 0.93523 1.18958 0.94653 0.94437 0.93099 1.21680 1.44240 0.95266 0.97122 0.92221 1.26017 0.95713 0.95789 1.02437 1.70096 1.50077 1.09228 1.28069 0.85477 0.79215 0.78305 0.77915 1.19136 1.20707 1.19082 1.21483 1.00501 0.98774 0.92386 1.21136 0.95308 0.99421 0.94363 0.91481 1.21828 1.01076 1.00111 0.97047 0.92391 0.92681 0.92930 0.90407 0.92674 0.92501 0.92880 0.91993 0.91421 0.91544 0.93633 0.83937 0.92498 0.96099 0.93139 0.92980 0.99186 0.99189 0.92728 0.92410 0.91967 0.92514 0.91669 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.79 71.98 0.63 -1.18 16 2 C -0.09 -1.16 2.47 -10.79 -0.03 -1.19 16 3 C -0.15 -2.03 8.46 71.98 0.61 -1.42 16 4 C -0.07 -1.06 1.50 -10.79 -0.02 -1.07 16 5 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.11 -1.92 4.48 30.60 0.14 -1.78 16 7 C -0.14 -3.13 5.17 30.60 0.16 -2.97 16 8 C 0.09 2.14 2.47 44.91 0.11 2.25 16 9 H 0.06 1.65 7.80 -2.39 -0.02 1.63 16 10 N -0.69 -20.30 6.25 -491.57 -3.07 -23.37 16 11 C 0.07 2.69 5.48 86.30 0.47 3.16 16 12 C -0.09 -3.97 5.41 30.59 0.17 -3.80 16 13 C 0.03 1.43 4.97 29.85 0.15 1.58 16 14 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 17 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 18 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 C -0.09 -1.92 4.81 30.58 0.15 -1.77 16 23 C -0.08 -1.37 1.99 -10.81 -0.02 -1.39 16 24 H 0.07 1.18 6.55 -2.39 -0.02 1.17 16 25 C -0.14 -1.99 8.66 71.98 0.62 -1.37 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.68 6.85 -2.39 -0.02 0.67 16 29 H 0.08 0.93 6.33 -2.39 -0.02 0.92 16 30 H 0.05 0.76 6.55 -2.39 -0.02 0.75 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.77 6.35 -2.39 -0.02 0.76 16 33 H 0.06 1.15 6.35 -2.39 -0.02 1.14 16 34 H 0.07 1.13 6.69 -2.39 -0.02 1.11 16 35 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 36 H 0.04 1.13 7.45 -2.39 -0.02 1.11 16 37 H 0.34 9.44 8.47 -89.70 -0.76 8.68 16 38 H 0.06 2.14 8.06 -2.38 -0.02 2.12 16 39 H 0.02 0.76 7.44 -2.39 -0.02 0.74 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 42 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 43 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.06 0.78 6.68 -2.39 -0.02 0.76 16 49 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -63.33 363.08 3.19 -60.13 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.12 Total: 16.42 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 3.84 Total: -42.44 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -2.79 Total: -81.26 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -63.33 3.19 -60.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536302373.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.048 kcal (2) G-P(sol) polarization free energy of solvation -63.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds