Wall clock time and date at job start Mon Mar 30 2020 08:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 C 1.53002 * 109.46584 * 119.99549 * 2 1 3 5 5 H 1.08997 * 109.47261 * 300.00157 * 4 2 1 6 6 C 1.53006 * 109.46820 * 180.02562 * 4 2 1 7 7 C 1.53000 * 109.47155 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47094 * 59.99534 * 7 6 4 9 9 H 1.09009 * 109.46821 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47108 * 60.00527 * 8 7 6 11 11 C 1.46898 * 111.00056 * 84.99718 * 10 8 7 12 12 C 1.53007 * 109.47029 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46965 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46832 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00239 * 359.72646 * 14 13 12 16 16 C 1.37876 * 119.99938 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00248 * 179.72563 * 16 14 13 18 18 Si 1.86800 * 120.00014 * 359.72748 * 16 14 13 19 19 H 1.48500 * 109.47209 * 89.99978 * 18 16 14 20 20 H 1.48498 * 109.47084 * 210.00043 * 18 16 14 21 21 H 1.48499 * 109.47015 * 330.00057 * 18 16 14 22 22 C 1.52996 * 109.47625 * 300.00274 * 8 7 6 23 23 C 1.52998 * 109.47085 * 60.00504 * 4 2 1 24 24 H 1.09002 * 109.46947 * 299.99951 * 23 4 2 25 25 C 1.53005 * 109.47261 * 59.99639 * 23 4 2 26 26 H 1.08997 * 109.47449 * 300.00409 * 1 2 3 27 27 H 1.09004 * 109.46640 * 60.00435 * 1 2 3 28 28 H 1.08996 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47449 * 239.99591 * 2 1 3 30 30 H 1.08998 * 109.47403 * 299.99537 * 3 2 1 31 31 H 1.09006 * 109.47406 * 59.99813 * 3 2 1 32 32 H 1.09005 * 109.47408 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46915 * 59.99976 * 6 4 2 34 34 H 1.09006 * 109.46831 * 300.00056 * 6 4 2 35 35 H 1.08997 * 109.46745 * 299.99745 * 7 6 4 36 36 H 1.08991 * 109.47126 * 179.97438 * 7 6 4 37 37 H 1.00902 * 111.00396 * 208.95010 * 10 8 7 38 38 H 1.08997 * 109.47674 * 60.00023 * 11 10 8 39 39 H 1.09004 * 109.46961 * 299.99512 * 11 10 8 40 40 H 1.09004 * 109.47234 * 60.00066 * 12 11 10 41 41 H 1.08997 * 109.46768 * 299.99778 * 12 11 10 42 42 H 1.09004 * 109.46853 * 60.00124 * 13 12 11 43 43 H 1.08997 * 109.47434 * 299.99662 * 13 12 11 44 44 H 0.97004 * 120.00391 * 179.97438 * 17 16 14 45 45 H 1.08992 * 109.47574 * 180.02562 * 22 8 7 46 46 H 1.09006 * 109.46753 * 300.00182 * 22 8 7 47 47 H 1.08999 * 109.47022 * 48.45709 * 25 23 4 48 48 H 1.08996 * 109.46963 * 168.45291 * 25 23 4 49 49 H 1.08997 * 109.46920 * 288.45463 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6765 -0.2073 2.1393 6 6 3.5700 -0.7207 1.2497 7 6 4.0799 -1.4424 2.4987 8 6 3.5703 -2.8850 2.4979 9 1 3.9341 -3.3993 3.3876 10 7 4.0605 -3.5768 1.2983 11 6 5.4080 -4.1194 1.5172 12 6 5.8837 -4.8304 0.2486 13 6 7.2874 -5.3950 0.4764 14 6 7.7557 -6.0958 -0.7729 15 1 7.1144 -6.1384 -1.6409 16 6 9.0004 -6.6878 -0.8058 17 7 9.4070 -7.3041 -1.8941 18 14 10.1094 -6.6148 0.6957 19 1 9.8467 -7.7914 1.5628 20 1 11.5298 -6.6261 0.2629 21 1 9.8331 -5.3688 1.4549 22 6 2.0404 -2.8856 2.4975 23 6 1.5300 -2.1637 1.2494 24 1 0.4399 -2.1637 1.2492 25 6 2.0400 -2.8850 0.0001 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 3.9329 0.3072 1.2499 34 1 3.9337 -1.2343 0.3597 35 1 3.7162 -0.9291 3.3888 36 1 5.1698 -1.4424 2.4988 37 1 3.4205 -4.3026 1.0125 38 1 5.3841 -4.8287 2.3444 39 1 6.0930 -3.3057 1.7558 40 1 5.9077 -4.1207 -0.5784 41 1 5.1988 -5.6439 0.0095 42 1 7.2637 -6.1046 1.3034 43 1 7.9720 -4.5812 0.7152 44 1 10.2828 -7.7203 -1.9174 45 1 1.6774 -3.9133 2.4974 46 1 1.6767 -2.3722 3.3877 47 1 3.1104 -2.7104 -0.1086 48 1 1.8545 -3.9547 0.0970 49 1 1.5186 -2.5038 -0.8778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536302374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:05 Heat of formation + Delta-G solvation = -33.676931 kcal Electronic energy + Delta-G solvation = -21654.550352 eV Core-core repulsion = 18808.052520 eV Total energy + Delta-G solvation = -2846.497832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.22707 -36.58913 -34.48862 -32.76281 -31.93672 -31.03456 -28.98989 -27.29595 -26.65180 -25.74472 -22.72910 -22.60202 -21.26303 -20.10163 -19.60785 -18.44375 -16.72286 -16.22289 -15.51355 -15.25222 -14.39769 -14.22284 -14.07878 -13.89344 -13.67081 -13.46061 -13.16290 -12.75090 -12.55199 -12.40800 -12.25973 -12.10431 -11.92861 -11.58029 -11.45076 -11.26070 -11.22868 -11.07378 -10.94882 -10.81271 -10.67528 -10.56339 -10.15164 -9.94076 -9.85029 -9.73387 -9.61465 -9.45645 -9.13148 -8.50637 -7.98990 -6.01021 -3.98462 3.32370 3.39712 3.43900 4.35806 4.48018 4.58787 4.66802 4.73880 4.93478 5.03559 5.16079 5.32129 5.33043 5.36534 5.45713 5.48395 5.50370 5.53414 5.60093 5.68023 5.72642 5.76142 5.82272 5.85394 5.87900 5.91436 5.99661 6.02247 6.05119 6.11043 6.18523 6.24594 6.29722 6.38821 6.40533 6.46823 6.55347 6.60188 6.68168 6.93791 6.96637 7.31207 7.41619 7.48780 7.67719 7.84212 8.58576 9.04788 9.61889 11.12611 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029600 B = 0.003602 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.722854 B = 7772.607110 C = 7926.558556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.071 4.071 5 H 0.058 0.942 6 C -0.110 4.110 7 C -0.105 4.105 8 C 0.085 3.915 9 H 0.038 0.962 10 N -0.674 5.674 11 C 0.050 3.950 12 C -0.098 4.098 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.117 4.117 23 C -0.078 4.078 24 H 0.060 0.940 25 C -0.170 4.170 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.342 0.658 38 H 0.021 0.979 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.007 0.993 43 H 0.015 0.985 44 H 0.262 0.738 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.115 0.885 48 H 0.042 0.958 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.846 15.007 8.774 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.090 4.090 5 H 0.077 0.923 6 C -0.147 4.147 7 C -0.143 4.143 8 C -0.025 4.025 9 H 0.056 0.944 10 N -0.308 5.308 11 C -0.079 4.079 12 C -0.136 4.136 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.154 4.154 23 C -0.096 4.096 24 H 0.078 0.922 25 C -0.227 4.227 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.026 0.974 43 H 0.033 0.967 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.133 0.867 48 H 0.061 0.939 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -17.470 15.476 8.411 24.808 hybrid contribution 0.450 -0.886 1.409 1.725 sum -17.020 14.590 9.820 24.474 Atomic orbital electron populations 1.21885 0.95856 1.01663 1.01102 1.21165 0.95187 0.95843 0.98978 1.21899 1.01411 0.96208 1.01087 1.21146 0.95896 0.94935 0.96981 0.92305 1.21577 0.94358 0.99262 0.99546 1.21485 1.00400 0.94638 0.97799 1.21492 0.93879 0.95315 0.91839 0.94414 1.61232 1.04178 1.32815 1.32568 1.22259 0.90051 0.97422 0.98163 1.21420 0.98111 0.98504 0.95547 1.19540 0.92573 0.95687 0.97281 1.21166 1.01610 1.33827 0.98955 0.91048 1.25045 0.97873 0.94826 0.95881 1.69920 1.20091 1.36823 1.27626 0.86768 0.79867 0.78955 0.83617 1.20427 1.21432 1.19044 1.21769 0.95041 1.00257 0.98378 1.21022 0.98712 0.94592 0.95274 0.92176 1.22507 1.06020 0.98531 0.95643 0.93174 0.93210 0.92419 0.90683 0.93194 0.93184 0.92247 0.92860 0.89806 0.92758 0.92139 0.83707 0.96073 0.91662 0.92021 0.93217 0.97424 0.96687 0.92812 0.92347 0.91965 0.86663 0.93888 0.94241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.84 37.16 0.33 -0.88 16 2 C -0.09 -0.84 2.17 -90.62 -0.20 -1.04 16 3 C -0.15 -1.26 8.84 37.16 0.33 -0.93 16 4 C -0.07 -0.67 1.55 -90.62 -0.14 -0.81 16 5 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 6 C -0.11 -1.17 4.51 -26.73 -0.12 -1.29 16 7 C -0.11 -1.16 5.53 -26.73 -0.15 -1.31 16 8 C 0.08 0.97 2.82 -67.72 -0.19 0.78 16 9 H 0.04 0.46 7.80 -51.92 -0.40 0.05 16 10 N -0.67 -8.81 2.84 -106.72 -0.30 -9.12 16 11 C 0.05 0.79 5.48 -3.82 -0.02 0.77 16 12 C -0.10 -1.93 5.41 -26.73 -0.14 -2.08 16 13 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 14 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 15 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 18 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 22 C -0.12 -1.15 5.04 -26.76 -0.13 -1.29 16 23 C -0.08 -0.75 2.37 -90.64 -0.21 -0.97 16 24 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 25 C -0.17 -1.84 6.83 37.16 0.25 -1.59 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 29 H 0.07 0.75 6.70 -51.93 -0.35 0.40 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 33 H 0.05 0.54 6.43 -51.93 -0.33 0.21 16 34 H 0.08 1.04 5.90 -51.93 -0.31 0.74 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 37 H 0.34 4.37 6.19 -39.29 -0.24 4.13 16 38 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 39 H 0.06 1.07 7.43 -51.93 -0.39 0.68 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.01 0.18 7.58 -51.93 -0.39 -0.21 16 43 H 0.01 0.36 7.19 -51.93 -0.37 -0.01 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.12 1.44 3.69 -51.93 -0.19 1.25 16 48 H 0.04 0.47 7.10 -51.93 -0.37 0.10 16 49 H 0.04 0.42 7.09 -51.93 -0.37 0.05 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -29.46 349.19 -9.22 -38.68 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -9.34 Total: -0.08 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -0.94 Total: -24.58 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.47 Total: -36.70 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.46 -9.22 -38.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536302374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.004 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds