Wall clock time and date at job start Mon Mar 30 2020 08:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 C 1.53002 * 109.46584 * 119.99549 * 2 1 3 5 5 H 1.08997 * 109.47261 * 300.00157 * 4 2 1 6 6 C 1.53006 * 109.46820 * 180.02562 * 4 2 1 7 7 C 1.53000 * 109.47155 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47094 * 59.99534 * 7 6 4 9 9 H 1.09009 * 109.46821 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47108 * 60.00527 * 8 7 6 11 11 C 1.46898 * 111.00056 * 84.99718 * 10 8 7 12 12 C 1.53007 * 109.47029 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46965 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46832 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00239 * 359.72646 * 14 13 12 16 16 C 1.37876 * 119.99938 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00248 * 179.72563 * 16 14 13 18 18 Si 1.86800 * 120.00014 * 359.72748 * 16 14 13 19 19 H 1.48500 * 109.47209 * 89.99978 * 18 16 14 20 20 H 1.48498 * 109.47084 * 210.00043 * 18 16 14 21 21 H 1.48499 * 109.47015 * 330.00057 * 18 16 14 22 22 C 1.52996 * 109.47625 * 300.00274 * 8 7 6 23 23 C 1.52998 * 109.47085 * 60.00504 * 4 2 1 24 24 H 1.09002 * 109.46947 * 299.99951 * 23 4 2 25 25 C 1.53005 * 109.47261 * 59.99639 * 23 4 2 26 26 H 1.08997 * 109.47449 * 300.00409 * 1 2 3 27 27 H 1.09004 * 109.46640 * 60.00435 * 1 2 3 28 28 H 1.08996 * 109.46819 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47449 * 239.99591 * 2 1 3 30 30 H 1.08998 * 109.47403 * 299.99537 * 3 2 1 31 31 H 1.09006 * 109.47406 * 59.99813 * 3 2 1 32 32 H 1.09005 * 109.47408 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46915 * 59.99976 * 6 4 2 34 34 H 1.09006 * 109.46831 * 300.00056 * 6 4 2 35 35 H 1.08997 * 109.46745 * 299.99745 * 7 6 4 36 36 H 1.08991 * 109.47126 * 179.97438 * 7 6 4 37 37 H 1.00902 * 111.00396 * 208.95010 * 10 8 7 38 38 H 1.08997 * 109.47674 * 60.00023 * 11 10 8 39 39 H 1.09004 * 109.46961 * 299.99512 * 11 10 8 40 40 H 1.09004 * 109.47234 * 60.00066 * 12 11 10 41 41 H 1.08997 * 109.46768 * 299.99778 * 12 11 10 42 42 H 1.09004 * 109.46853 * 60.00124 * 13 12 11 43 43 H 1.08997 * 109.47434 * 299.99662 * 13 12 11 44 44 H 0.97004 * 120.00391 * 179.97438 * 17 16 14 45 45 H 1.08992 * 109.47574 * 180.02562 * 22 8 7 46 46 H 1.09006 * 109.46753 * 300.00182 * 22 8 7 47 47 H 1.08999 * 109.47022 * 48.45709 * 25 23 4 48 48 H 1.08996 * 109.46963 * 168.45291 * 25 23 4 49 49 H 1.08997 * 109.46920 * 288.45463 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6765 -0.2073 2.1393 6 6 3.5700 -0.7207 1.2497 7 6 4.0799 -1.4424 2.4987 8 6 3.5703 -2.8850 2.4979 9 1 3.9341 -3.3993 3.3876 10 7 4.0605 -3.5768 1.2983 11 6 5.4080 -4.1194 1.5172 12 6 5.8837 -4.8304 0.2486 13 6 7.2874 -5.3950 0.4764 14 6 7.7557 -6.0958 -0.7729 15 1 7.1144 -6.1384 -1.6409 16 6 9.0004 -6.6878 -0.8058 17 7 9.4070 -7.3041 -1.8941 18 14 10.1094 -6.6148 0.6957 19 1 9.8467 -7.7914 1.5628 20 1 11.5298 -6.6261 0.2629 21 1 9.8331 -5.3688 1.4549 22 6 2.0404 -2.8856 2.4975 23 6 1.5300 -2.1637 1.2494 24 1 0.4399 -2.1637 1.2492 25 6 2.0400 -2.8850 0.0001 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 3.9329 0.3072 1.2499 34 1 3.9337 -1.2343 0.3597 35 1 3.7162 -0.9291 3.3888 36 1 5.1698 -1.4424 2.4988 37 1 3.4205 -4.3026 1.0125 38 1 5.3841 -4.8287 2.3444 39 1 6.0930 -3.3057 1.7558 40 1 5.9077 -4.1207 -0.5784 41 1 5.1988 -5.6439 0.0095 42 1 7.2637 -6.1046 1.3034 43 1 7.9720 -4.5812 0.7152 44 1 10.2828 -7.7203 -1.9174 45 1 1.6774 -3.9133 2.4974 46 1 1.6767 -2.3722 3.3877 47 1 3.1104 -2.7104 -0.1086 48 1 1.8545 -3.9547 0.0970 49 1 1.5186 -2.5038 -0.8778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536302374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:05 Heat of formation + Delta-G solvation = -48.251206 kcal Electronic energy + Delta-G solvation = -21655.182340 eV Core-core repulsion = 18808.052520 eV Total energy + Delta-G solvation = -2847.129820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.07937 -37.63561 -35.96033 -34.47953 -32.90461 -32.50162 -30.07952 -28.09841 -27.91868 -26.87670 -24.15427 -23.55696 -22.32272 -21.72257 -20.45559 -19.31475 -18.88371 -17.13056 -16.64622 -16.47481 -16.01720 -15.33726 -15.17573 -15.00980 -14.69681 -14.56659 -14.32108 -14.01472 -13.76820 -13.52574 -13.36210 -13.19738 -12.98051 -12.78654 -12.69701 -12.41448 -12.28963 -12.09666 -12.00783 -11.85564 -11.79268 -11.65995 -11.50302 -11.47257 -11.31766 -11.19409 -10.92618 -10.76393 -10.62257 -10.45671 -9.04925 -8.29356 -6.33372 1.34944 1.37298 1.49615 2.36201 3.05845 3.30583 3.78247 3.86295 3.94194 4.19840 4.23345 4.29561 4.36446 4.40448 4.53314 4.56925 4.64668 4.68626 4.70843 4.76240 4.80221 4.88032 4.91812 4.94525 4.99863 5.05086 5.06805 5.10386 5.13657 5.19083 5.21933 5.23610 5.25229 5.31925 5.45252 5.52494 5.53698 5.57128 5.61086 5.63290 5.67630 5.67859 5.75529 6.01409 6.24597 6.32106 6.60596 6.75113 7.31204 8.87713 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.029600 B = 0.003602 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.722854 B = 7772.607110 C = 7926.558556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.065 4.065 5 H 0.067 0.933 6 C -0.107 4.107 7 C -0.104 4.104 8 C 0.084 3.916 9 H 0.036 0.964 10 N -0.672 5.672 11 C 0.064 3.936 12 C -0.088 4.088 13 C -0.010 4.010 14 C -0.532 4.532 15 H 0.029 0.971 16 C 0.001 3.999 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.247 1.247 22 C -0.112 4.112 23 C -0.074 4.074 24 H 0.070 0.930 25 C -0.167 4.167 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.345 0.655 38 H 0.025 0.975 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.016 0.984 43 H 0.018 0.982 44 H 0.266 0.734 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.040 0.960 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.739 16.180 11.301 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.084 4.084 5 H 0.085 0.915 6 C -0.144 4.144 7 C -0.142 4.142 8 C -0.025 4.025 9 H 0.054 0.946 10 N -0.306 5.306 11 C -0.065 4.065 12 C -0.126 4.126 13 C -0.048 4.048 14 C -0.570 4.570 15 H 0.048 0.952 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.170 1.170 22 C -0.150 4.150 23 C -0.092 4.092 24 H 0.088 0.912 25 C -0.224 4.224 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.166 0.834 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.117 0.883 48 H 0.059 0.941 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.388 16.663 10.941 27.120 hybrid contribution 0.674 -1.252 0.503 1.508 sum -17.714 15.411 11.445 26.120 Atomic orbital electron populations 1.21854 0.94978 1.01744 1.01627 1.21137 0.95884 0.95953 0.98145 1.21880 1.00997 0.95938 1.01635 1.21095 0.94864 0.94915 0.97480 0.91457 1.21518 0.95314 0.99112 0.98463 1.21487 0.99567 0.94596 0.98572 1.21560 0.95096 0.95140 0.90721 0.94570 1.61223 1.02956 1.32636 1.33740 1.21967 0.91634 0.97045 0.95807 1.21233 0.95856 0.98254 0.97242 1.19488 0.94878 0.95457 0.94954 1.21530 1.01427 1.34417 0.99669 0.95221 1.26068 0.99719 0.94267 0.99488 1.70078 1.20921 1.38116 1.30293 0.85604 0.77338 0.80066 0.79300 1.19131 1.20921 1.17026 1.21749 0.93571 1.00714 0.98961 1.20998 0.99196 0.94491 0.94514 0.91207 1.22437 1.04921 0.98579 0.96480 0.92441 0.92922 0.92542 0.92144 0.92853 0.92442 0.92886 0.92500 0.91919 0.91177 0.93540 0.83428 0.95674 0.91754 0.93296 0.93685 0.96586 0.96357 0.92515 0.92062 0.90457 0.88294 0.94104 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.84 71.98 0.64 -1.45 16 2 C -0.09 -1.54 2.17 -10.79 -0.02 -1.56 16 3 C -0.15 -2.27 8.84 71.98 0.64 -1.64 16 4 C -0.07 -1.10 1.55 -10.79 -0.02 -1.12 16 5 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.11 -2.14 4.51 30.60 0.14 -2.00 16 7 C -0.10 -2.11 5.53 30.59 0.17 -1.94 16 8 C 0.08 1.76 2.82 44.91 0.13 1.89 16 9 H 0.04 0.79 7.80 -2.38 -0.02 0.77 16 10 N -0.67 -16.89 2.84 -491.57 -1.39 -18.29 16 11 C 0.06 1.99 5.48 86.31 0.47 2.46 16 12 C -0.09 -3.47 5.41 30.60 0.17 -3.30 16 13 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 14 C -0.53 -31.63 9.66 25.60 0.25 -31.38 16 15 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 16 C 0.00 0.06 5.47 84.65 0.46 0.52 16 17 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 18 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 22 C -0.11 -1.93 5.04 30.58 0.15 -1.77 16 23 C -0.07 -1.28 2.37 -10.81 -0.03 -1.30 16 24 H 0.07 1.12 6.43 -2.39 -0.02 1.11 16 25 C -0.17 -3.49 6.83 71.98 0.49 -3.00 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.82 6.43 -2.39 -0.02 0.81 16 29 H 0.06 1.18 6.70 -2.39 -0.02 1.17 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.05 0.88 6.43 -2.38 -0.02 0.86 16 33 H 0.06 1.09 6.43 -2.39 -0.02 1.07 16 34 H 0.06 1.54 5.90 -2.38 -0.01 1.53 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.07 7.45 -2.39 -0.02 1.05 16 37 H 0.34 8.47 6.19 -89.69 -0.56 7.92 16 38 H 0.03 0.76 8.05 -2.39 -0.02 0.74 16 39 H 0.06 2.01 7.43 -2.38 -0.02 2.00 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.02 0.73 7.58 -2.39 -0.02 0.72 16 43 H 0.02 0.86 7.19 -2.39 -0.02 0.84 16 44 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 45 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 46 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.10 2.45 3.69 -2.39 -0.01 2.44 16 48 H 0.04 0.85 7.10 -2.39 -0.02 0.83 16 49 H 0.04 0.79 7.09 -2.39 -0.02 0.78 16 Total: -1.00 -64.04 349.19 4.82 -59.22 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.28 Total: 18.82 kcal Atomic # 6 Polarization: -49.71 SS G_CDS: 3.76 Total: -45.95 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.09 Total: -79.11 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -64.04 4.82 -59.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536302374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.965 kcal (2) G-P(sol) polarization free energy of solvation -64.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds