Wall clock time and date at job start Mon Mar 30 2020 08:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 C 1.53003 * 109.47074 * 119.99768 * 2 1 3 5 5 H 1.09008 * 109.46934 * 300.00622 * 4 2 1 6 6 C 1.52993 * 109.47488 * 180.02562 * 4 2 1 7 7 C 1.53003 * 109.47488 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46930 * 59.99816 * 7 6 4 9 9 H 1.09007 * 109.46634 * 60.00042 * 8 7 6 10 10 N 1.46891 * 109.47092 * 180.02562 * 8 7 6 11 11 C 1.46899 * 111.00086 * 275.00001 * 10 8 7 12 12 C 1.53002 * 109.47000 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47197 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47088 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00496 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99572 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 C 1.53001 * 109.46994 * 300.00538 * 8 7 6 23 23 C 1.52994 * 109.47536 * 60.00038 * 22 8 7 24 24 H 1.09007 * 109.47268 * 179.97438 * 23 22 8 25 25 C 1.52995 * 109.47540 * 59.99853 * 23 22 8 26 26 H 1.08997 * 109.47075 * 300.00204 * 1 2 3 27 27 H 1.09002 * 109.46663 * 60.00121 * 1 2 3 28 28 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47075 * 239.99796 * 2 1 3 30 30 H 1.09000 * 109.47272 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47489 * 299.99946 * 3 2 1 32 32 H 1.09007 * 109.47280 * 60.00004 * 3 2 1 33 33 H 1.08998 * 109.47213 * 59.99764 * 6 4 2 34 34 H 1.08997 * 109.46785 * 300.00103 * 6 4 2 35 35 H 1.08998 * 109.46867 * 300.00557 * 7 6 4 36 36 H 1.08994 * 109.47415 * 179.97438 * 7 6 4 37 37 H 1.00899 * 111.00020 * 151.04356 * 10 8 7 38 38 H 1.09002 * 109.46776 * 60.00451 * 11 10 8 39 39 H 1.09001 * 109.47354 * 299.99909 * 11 10 8 40 40 H 1.09002 * 109.47097 * 60.00187 * 12 11 10 41 41 H 1.09001 * 109.47600 * 299.99947 * 12 11 10 42 42 H 1.09002 * 109.46935 * 60.00099 * 13 12 11 43 43 H 1.08998 * 109.47061 * 300.00893 * 13 12 11 44 44 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 45 45 H 1.08998 * 109.47021 * 180.02562 * 22 8 7 46 46 H 1.09007 * 109.47025 * 299.99265 * 22 8 7 47 47 H 1.09007 * 109.46955 * 300.00332 * 25 23 22 48 48 H 1.09001 * 109.47196 * 60.00101 * 25 23 22 49 49 H 1.09002 * 109.47488 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6765 -0.2073 2.1393 6 6 3.5699 -0.7207 1.2497 7 6 4.0799 -1.4425 2.4987 8 6 3.5704 -2.8852 2.4978 9 1 3.9341 -3.3984 1.6075 10 7 4.0595 -3.5780 3.6971 11 6 5.4071 -4.1204 3.4790 12 6 5.8817 -4.8325 4.7474 13 6 7.2851 -5.3980 4.5200 14 6 7.7522 -6.0999 5.7691 15 1 7.1122 -6.1391 6.6380 16 6 8.9970 -6.6920 5.8025 17 7 9.7767 -6.6438 4.7445 18 14 9.5759 -7.5626 7.3504 19 1 8.6423 -8.6715 7.6733 20 1 9.6072 -6.5977 8.4788 21 1 10.9380 -8.1114 7.1298 22 6 2.0404 -2.8857 2.4973 23 6 1.5305 -2.1639 1.2484 24 1 0.4404 -2.1647 1.2478 25 6 2.0410 -2.8842 -0.0012 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.9329 0.3070 1.2499 34 1 3.9336 -1.2343 0.3598 35 1 3.7161 -0.9293 3.3888 36 1 5.1699 -1.4425 2.4987 37 1 3.4192 -4.3040 3.9818 38 1 6.0923 -3.3066 3.2417 39 1 5.3840 -4.8291 2.6511 40 1 5.1966 -5.6462 4.9852 41 1 5.9050 -4.1236 5.5750 42 1 7.9704 -4.5845 4.2820 43 1 7.2614 -6.1070 3.6924 44 1 9.4760 -6.1920 3.9405 45 1 1.6774 -3.9134 2.4971 46 1 1.6766 -2.3725 3.3876 47 1 3.1310 -2.8839 -0.0009 48 1 1.6780 -3.9120 -0.0019 49 1 1.6780 -2.3698 -0.8910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536302375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:07 Heat of formation + Delta-G solvation = -58.149444 kcal Electronic energy + Delta-G solvation = -21041.575975 eV Core-core repulsion = 18194.016936 eV Total energy + Delta-G solvation = -2847.559040 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.14700 -36.75671 -34.69116 -33.30103 -31.97961 -30.95827 -28.33782 -27.41907 -26.78623 -25.32827 -22.80357 -22.52777 -21.63866 -20.45549 -19.95189 -18.56413 -16.68508 -16.23191 -15.70558 -15.14089 -14.56893 -14.19851 -14.19192 -13.79818 -13.73499 -13.64169 -13.17174 -12.96655 -12.79424 -12.68079 -12.46102 -12.05006 -11.82937 -11.65930 -11.52348 -11.42464 -11.30447 -11.18783 -11.09675 -10.77439 -10.67070 -10.56145 -10.34066 -10.10689 -10.08176 -9.86883 -9.76904 -9.61506 -8.48485 -8.28238 -8.14093 -6.31815 -4.00060 3.46599 3.48997 3.67597 4.22689 4.42986 4.52064 4.58047 4.61341 4.77151 4.92161 5.09330 5.16268 5.21206 5.24672 5.29288 5.34812 5.40751 5.45472 5.47174 5.49526 5.60531 5.62822 5.69437 5.72947 5.75506 5.78147 5.82542 5.89069 5.92112 5.96523 6.01673 6.11190 6.12091 6.20843 6.25281 6.28244 6.32455 6.48606 6.64407 6.71248 7.02569 7.36322 7.48440 7.58951 7.68371 8.28404 8.51765 8.93739 9.72203 11.08910 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.047037 B = 0.002798 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.134492 B =10004.222660 C =10163.439320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.075 4.075 5 H 0.069 0.931 6 C -0.117 4.117 7 C -0.106 4.106 8 C 0.086 3.914 9 H 0.043 0.957 10 N -0.689 5.689 11 C 0.060 3.940 12 C -0.100 4.100 13 C 0.009 3.991 14 C -0.600 4.600 15 H 0.048 0.952 16 C 0.012 3.988 17 N -0.915 5.915 18 Si 1.069 2.931 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.283 1.283 22 C -0.115 4.115 23 C -0.083 4.083 24 H 0.071 0.929 25 C -0.155 4.155 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.337 0.663 38 H 0.065 0.935 39 H 0.021 0.979 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.006 0.994 43 H 0.004 0.996 44 H 0.268 0.732 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.050 0.950 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.434 13.612 -10.889 26.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.207 4.207 4 C -0.094 4.094 5 H 0.088 0.912 6 C -0.155 4.155 7 C -0.144 4.144 8 C -0.024 4.024 9 H 0.061 0.939 10 N -0.320 5.320 11 C -0.069 4.069 12 C -0.138 4.138 13 C -0.028 4.028 14 C -0.638 4.638 15 H 0.067 0.933 16 C -0.191 4.191 17 N -0.552 5.552 18 Si 0.897 3.103 19 H -0.215 1.215 20 H -0.214 1.214 21 H -0.208 1.208 22 C -0.153 4.153 23 C -0.102 4.102 24 H 0.089 0.911 25 C -0.211 4.211 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.155 0.845 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.025 0.975 43 H 0.022 0.978 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.930 13.338 -9.930 24.454 hybrid contribution -1.484 0.077 -1.241 1.936 sum -19.414 13.415 -11.171 26.109 Atomic orbital electron populations 1.21893 0.95542 1.01754 1.01427 1.21200 0.95507 0.96021 0.98552 1.21903 1.01327 0.96052 1.01409 1.21204 0.95509 0.94996 0.97664 0.91243 1.21694 0.94937 1.00399 0.98484 1.21511 1.00443 0.94811 0.97679 1.21547 0.93825 0.95189 0.91801 0.93932 1.60551 1.04323 1.33281 1.33807 1.22151 0.89194 0.97327 0.98207 1.21484 0.98674 0.98202 0.95413 1.19190 0.91212 0.95197 0.97247 1.22069 1.03925 1.38303 0.99504 0.93347 1.25871 0.93583 0.96519 1.03122 1.70781 1.38785 1.41897 1.03706 0.83545 0.76176 0.76140 0.74391 1.21487 1.21424 1.20799 1.21740 0.95155 1.00289 0.98154 1.21115 0.99780 0.94539 0.94797 0.91054 1.22014 1.01905 0.99828 0.97402 0.92819 0.93093 0.92411 0.91032 0.92317 0.93089 0.92824 0.91767 0.91961 0.91516 0.92124 0.84549 0.91671 0.96060 0.93573 0.92438 0.97539 0.97797 0.92175 0.92300 0.91232 0.91990 0.93074 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.84 37.16 0.33 -0.69 16 2 C -0.09 -0.71 2.15 -90.62 -0.20 -0.90 16 3 C -0.15 -1.07 8.84 37.16 0.33 -0.74 16 4 C -0.08 -0.64 1.55 -90.62 -0.14 -0.78 16 5 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 6 C -0.12 -1.13 4.58 -26.73 -0.12 -1.26 16 7 C -0.11 -1.28 5.43 -26.73 -0.15 -1.42 16 8 C 0.09 1.08 2.22 -67.71 -0.15 0.93 16 9 H 0.04 0.57 6.09 -51.93 -0.32 0.25 16 10 N -0.69 -10.39 6.31 -106.72 -0.67 -11.06 16 11 C 0.06 1.08 5.48 -3.82 -0.02 1.06 16 12 C -0.10 -2.16 5.41 -26.73 -0.14 -2.30 16 13 C 0.01 0.24 4.28 -27.88 -0.12 0.12 16 14 C -0.60 -17.73 9.11 -34.44 -0.31 -18.05 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 16 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 17 N -0.92 -28.84 13.65 55.43 0.76 -28.08 16 18 Si 1.07 25.95 29.90 -169.99 -5.08 20.87 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 C -0.12 -1.20 4.72 -26.73 -0.13 -1.32 16 23 C -0.08 -0.73 2.37 -90.62 -0.21 -0.95 16 24 H 0.07 0.58 6.43 -51.92 -0.33 0.25 16 25 C -0.15 -1.36 8.15 37.16 0.30 -1.06 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 29 H 0.07 0.55 6.42 -51.93 -0.33 0.22 16 30 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 34 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.81 7.45 -51.93 -0.39 0.43 16 37 H 0.34 4.80 8.34 -39.29 -0.33 4.48 16 38 H 0.06 1.20 7.44 -51.93 -0.39 0.82 16 39 H 0.02 0.38 8.06 -51.93 -0.42 -0.03 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 43 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 44 H 0.27 8.41 7.22 -40.82 -0.29 8.11 16 45 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.61 4.81 -51.92 -0.25 0.36 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.44 6.42 -51.93 -0.33 0.11 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -30.69 357.47 -9.84 -40.53 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -9.40 Total: -0.55 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -0.83 Total: -27.10 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.08 Total: -39.14 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.69 -9.84 -40.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536302375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.618 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds