Wall clock time and date at job start Mon Mar 30 2020 08:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 C 1.53003 * 109.47074 * 119.99768 * 2 1 3 5 5 H 1.09008 * 109.46934 * 300.00622 * 4 2 1 6 6 C 1.52993 * 109.47488 * 180.02562 * 4 2 1 7 7 C 1.53003 * 109.47488 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46930 * 59.99816 * 7 6 4 9 9 H 1.09007 * 109.46634 * 60.00042 * 8 7 6 10 10 N 1.46891 * 109.47092 * 180.02562 * 8 7 6 11 11 C 1.46899 * 111.00086 * 275.00001 * 10 8 7 12 12 C 1.53002 * 109.47000 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47197 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47088 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00496 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99572 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 C 1.53001 * 109.46994 * 300.00538 * 8 7 6 23 23 C 1.52994 * 109.47536 * 60.00038 * 22 8 7 24 24 H 1.09007 * 109.47268 * 179.97438 * 23 22 8 25 25 C 1.52995 * 109.47540 * 59.99853 * 23 22 8 26 26 H 1.08997 * 109.47075 * 300.00204 * 1 2 3 27 27 H 1.09002 * 109.46663 * 60.00121 * 1 2 3 28 28 H 1.09001 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47075 * 239.99796 * 2 1 3 30 30 H 1.09000 * 109.47272 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47489 * 299.99946 * 3 2 1 32 32 H 1.09007 * 109.47280 * 60.00004 * 3 2 1 33 33 H 1.08998 * 109.47213 * 59.99764 * 6 4 2 34 34 H 1.08997 * 109.46785 * 300.00103 * 6 4 2 35 35 H 1.08998 * 109.46867 * 300.00557 * 7 6 4 36 36 H 1.08994 * 109.47415 * 179.97438 * 7 6 4 37 37 H 1.00899 * 111.00020 * 151.04356 * 10 8 7 38 38 H 1.09002 * 109.46776 * 60.00451 * 11 10 8 39 39 H 1.09001 * 109.47354 * 299.99909 * 11 10 8 40 40 H 1.09002 * 109.47097 * 60.00187 * 12 11 10 41 41 H 1.09001 * 109.47600 * 299.99947 * 12 11 10 42 42 H 1.09002 * 109.46935 * 60.00099 * 13 12 11 43 43 H 1.08998 * 109.47061 * 300.00893 * 13 12 11 44 44 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 45 45 H 1.08998 * 109.47021 * 180.02562 * 22 8 7 46 46 H 1.09007 * 109.47025 * 299.99265 * 22 8 7 47 47 H 1.09007 * 109.46955 * 300.00332 * 25 23 22 48 48 H 1.09001 * 109.47196 * 60.00101 * 25 23 22 49 49 H 1.09002 * 109.47488 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6765 -0.2073 2.1393 6 6 3.5699 -0.7207 1.2497 7 6 4.0799 -1.4425 2.4987 8 6 3.5704 -2.8852 2.4978 9 1 3.9341 -3.3984 1.6075 10 7 4.0595 -3.5780 3.6971 11 6 5.4071 -4.1204 3.4790 12 6 5.8817 -4.8325 4.7474 13 6 7.2851 -5.3980 4.5200 14 6 7.7522 -6.0999 5.7691 15 1 7.1122 -6.1391 6.6380 16 6 8.9970 -6.6920 5.8025 17 7 9.7767 -6.6438 4.7445 18 14 9.5759 -7.5626 7.3504 19 1 8.6423 -8.6715 7.6733 20 1 9.6072 -6.5977 8.4788 21 1 10.9380 -8.1114 7.1298 22 6 2.0404 -2.8857 2.4973 23 6 1.5305 -2.1639 1.2484 24 1 0.4404 -2.1647 1.2478 25 6 2.0410 -2.8842 -0.0012 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 3.9329 0.3070 1.2499 34 1 3.9336 -1.2343 0.3598 35 1 3.7161 -0.9293 3.3888 36 1 5.1699 -1.4425 2.4987 37 1 3.4192 -4.3040 3.9818 38 1 6.0923 -3.3066 3.2417 39 1 5.3840 -4.8291 2.6511 40 1 5.1966 -5.6462 4.9852 41 1 5.9050 -4.1236 5.5750 42 1 7.9704 -4.5845 4.2820 43 1 7.2614 -6.1070 3.6924 44 1 9.4760 -6.1920 3.9405 45 1 1.6774 -3.9134 2.4971 46 1 1.6766 -2.3725 3.3876 47 1 3.1310 -2.8839 -0.0009 48 1 1.6780 -3.9120 -0.0019 49 1 1.6780 -2.3698 -0.8910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536302375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:07 Heat of formation + Delta-G solvation = -74.687235 kcal Electronic energy + Delta-G solvation = -21042.293108 eV Core-core repulsion = 18194.016936 eV Total energy + Delta-G solvation = -2848.276172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96767 -37.94809 -36.25310 -34.81020 -33.03307 -32.40612 -29.59835 -27.98607 -27.54982 -27.10292 -24.57065 -23.41542 -22.71505 -22.14389 -20.78281 -19.34629 -18.92097 -17.18823 -16.72578 -16.32369 -15.65880 -15.62166 -15.36229 -15.09914 -14.96311 -14.75067 -14.48646 -14.05187 -13.72991 -13.67720 -13.48395 -13.27280 -13.00513 -12.81259 -12.59962 -12.56946 -12.28319 -12.19522 -12.08019 -11.99012 -11.94966 -11.92553 -11.71638 -11.66359 -11.38197 -11.07924 -10.86531 -10.67833 -10.59545 -10.56370 -9.40470 -8.71743 -6.42012 1.51444 1.60518 1.80092 2.55820 3.10730 3.13487 3.66178 3.75083 3.83097 4.05371 4.10345 4.15932 4.25163 4.35990 4.39909 4.44168 4.45621 4.48741 4.55482 4.62403 4.68096 4.74749 4.76863 4.83911 4.87614 4.91127 4.93559 5.01304 5.06614 5.07331 5.10692 5.14229 5.19929 5.21116 5.29926 5.33180 5.39280 5.41424 5.44205 5.46982 5.50966 5.60431 5.71779 5.96191 6.10810 6.16177 6.46605 6.55577 7.40494 8.69146 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.047037 B = 0.002798 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.134492 B =10004.222660 C =10163.439320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.070 4.070 5 H 0.067 0.933 6 C -0.112 4.112 7 C -0.104 4.104 8 C 0.086 3.914 9 H 0.037 0.963 10 N -0.690 5.690 11 C 0.075 3.925 12 C -0.085 4.085 13 C 0.010 3.990 14 C -0.620 4.620 15 H 0.051 0.949 16 C -0.042 4.042 17 N -0.938 5.938 18 Si 1.120 2.880 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.282 1.282 22 C -0.110 4.110 23 C -0.079 4.079 24 H 0.085 0.915 25 C -0.153 4.153 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.343 0.657 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.050 0.950 41 H 0.051 0.949 42 H -0.013 1.013 43 H -0.013 1.013 44 H 0.254 0.746 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.048 0.952 48 H 0.050 0.950 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.157 13.926 -10.632 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.089 4.089 5 H 0.085 0.915 6 C -0.149 4.149 7 C -0.143 4.143 8 C -0.023 4.023 9 H 0.055 0.945 10 N -0.321 5.321 11 C -0.054 4.054 12 C -0.123 4.123 13 C -0.028 4.028 14 C -0.658 4.658 15 H 0.069 0.931 16 C -0.239 4.239 17 N -0.576 5.576 18 Si 0.940 3.060 19 H -0.192 1.192 20 H -0.193 1.193 21 H -0.207 1.207 22 C -0.148 4.148 23 C -0.098 4.098 24 H 0.103 0.897 25 C -0.210 4.210 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.162 0.838 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.005 0.995 43 H 0.005 0.995 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.688 13.672 -9.687 25.853 hybrid contribution -0.958 0.014 -1.355 1.660 sum -20.646 13.686 -11.042 27.120 Atomic orbital electron populations 1.21878 0.94772 1.02011 1.01788 1.21163 0.96089 0.95969 0.97718 1.21902 1.01082 0.95939 1.01779 1.21157 0.94382 0.95056 0.98286 0.91456 1.21649 0.95955 1.00309 0.97032 1.21488 0.99209 0.94820 0.98757 1.21619 0.95496 0.94865 0.90296 0.94550 1.60501 1.03083 1.33223 1.35298 1.21825 0.90851 0.96661 0.96077 1.21259 0.95851 0.98259 0.96980 1.19139 0.93781 0.94112 0.95760 1.22515 1.04360 1.38483 1.00467 0.93088 1.27545 0.93998 0.96824 1.05498 1.70921 1.39474 1.43085 1.04085 0.82917 0.76064 0.76036 0.70976 1.19234 1.19329 1.20740 1.21704 0.93127 1.00881 0.99086 1.21103 1.00482 0.94314 0.93862 0.89685 1.21996 1.01046 1.00049 0.97904 0.92786 0.92463 0.92189 0.91088 0.92719 0.92381 0.92826 0.91168 0.92091 0.92033 0.94121 0.83817 0.92442 0.96250 0.93097 0.93006 0.99496 0.99473 0.93639 0.91884 0.91262 0.93273 0.93059 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.84 71.98 0.64 -1.02 16 2 C -0.09 -1.17 2.15 -10.79 -0.02 -1.20 16 3 C -0.15 -1.88 8.84 71.98 0.64 -1.24 16 4 C -0.07 -1.08 1.55 -10.79 -0.02 -1.10 16 5 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 6 C -0.11 -2.06 4.58 30.59 0.14 -1.92 16 7 C -0.10 -2.49 5.43 30.60 0.17 -2.32 16 8 C 0.09 2.11 2.22 44.92 0.10 2.21 16 9 H 0.04 0.96 6.09 -2.38 -0.01 0.94 16 10 N -0.69 -20.42 6.31 -491.56 -3.10 -23.53 16 11 C 0.08 2.73 5.48 86.30 0.47 3.20 16 12 C -0.09 -3.73 5.41 30.60 0.17 -3.56 16 13 C 0.01 0.53 4.28 29.85 0.13 0.66 16 14 C -0.62 -36.99 9.11 25.60 0.23 -36.76 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 16 C -0.04 -2.51 5.46 84.66 0.46 -2.04 16 17 N -0.94 -60.09 13.65 21.45 0.29 -59.80 16 18 Si 1.12 51.48 29.90 68.60 2.05 53.53 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 C -0.11 -2.11 4.72 30.59 0.14 -1.97 16 23 C -0.08 -1.23 2.37 -10.79 -0.03 -1.25 16 24 H 0.08 1.15 6.43 -2.38 -0.02 1.14 16 25 C -0.15 -2.43 8.15 71.98 0.59 -1.85 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.65 6.43 -2.39 -0.02 0.63 16 29 H 0.07 0.95 6.42 -2.39 -0.02 0.93 16 30 H 0.05 0.72 6.43 -2.39 -0.02 0.71 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.07 1.22 6.43 -2.39 -0.02 1.20 16 34 H 0.06 1.15 6.43 -2.39 -0.02 1.14 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.11 7.45 -2.39 -0.02 1.09 16 37 H 0.34 9.41 8.34 -89.70 -0.75 8.67 16 38 H 0.06 2.17 7.44 -2.39 -0.02 2.15 16 39 H 0.02 0.71 8.06 -2.39 -0.02 0.69 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 42 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 43 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 44 H 0.25 16.50 7.22 -92.70 -0.67 15.83 16 45 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 46 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 47 H 0.05 0.91 4.81 -2.38 -0.01 0.90 16 48 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.07 0.92 6.42 -2.39 -0.02 0.90 16 Total: -1.00 -65.74 357.47 3.29 -62.46 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.24 Total: 17.50 kcal Atomic # 6 Polarization: -53.96 SS G_CDS: 3.81 Total: -50.16 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.81 Total: -83.32 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -65.74 3.29 -62.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536302375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.231 kcal (2) G-P(sol) polarization free energy of solvation -65.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds