Wall clock time and date at job start Mon Mar 30 2020 07:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.47040 * 2 1 4 4 H 1.09002 * 109.46899 * 182.68799 * 3 2 1 5 5 C 1.50695 * 109.47131 * 62.68364 * 3 2 1 6 6 H 1.07997 * 120.00088 * 245.00802 * 5 3 2 7 7 C 1.37875 * 119.99872 * 65.02060 * 5 3 2 8 8 N 1.31516 * 120.00117 * 8.57853 * 7 5 3 9 9 Si 1.86801 * 120.00140 * 188.58702 * 7 5 3 10 10 H 1.48497 * 109.47308 * 89.99335 * 9 7 5 11 11 H 1.48504 * 109.46843 * 329.99527 * 9 7 5 12 12 H 1.48501 * 109.47025 * 209.99767 * 9 7 5 13 13 N 1.46907 * 109.46732 * 302.68447 * 3 2 1 14 14 C 1.46897 * 110.99897 * 271.74014 * 13 3 2 15 15 H 1.09001 * 109.47090 * 33.64761 * 14 13 3 16 16 C 1.52998 * 109.47479 * 273.64308 * 14 13 3 17 17 C 1.52997 * 109.46991 * 300.00506 * 16 14 13 18 18 C 1.53002 * 109.47397 * 299.99794 * 17 16 14 19 19 H 1.09005 * 109.46546 * 300.00409 * 18 17 16 20 20 C 1.52997 * 109.47727 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.46984 * 306.29278 * 20 18 17 22 22 C 1.53005 * 109.46926 * 66.28699 * 20 18 17 23 23 C 1.52999 * 109.47197 * 59.99925 * 18 17 16 24 24 H 1.09000 * 109.47046 * 60.00254 * 23 18 17 25 25 C 1.52997 * 109.47255 * 180.02562 * 23 18 17 26 26 C 1.53008 * 109.46841 * 153.64149 * 14 13 3 27 27 H 1.09000 * 109.47116 * 182.59648 * 1 2 3 28 28 H 1.09000 * 109.47718 * 302.60228 * 1 2 3 29 29 H 1.09005 * 109.47074 * 62.59665 * 1 2 3 30 30 H 1.08998 * 109.47493 * 240.00211 * 2 1 3 31 31 H 1.08996 * 109.46834 * 119.99074 * 2 1 3 32 32 H 0.96997 * 120.00263 * 5.10406 * 8 7 5 33 33 H 1.00897 * 110.99359 * 147.78859 * 13 3 2 34 34 H 1.08998 * 109.46739 * 59.99751 * 16 14 13 35 35 H 1.08997 * 109.46889 * 180.02562 * 16 14 13 36 36 H 1.09005 * 109.47606 * 59.99554 * 17 16 14 37 37 H 1.09001 * 109.47510 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.47295 * 186.28446 * 20 18 17 39 39 H 1.09000 * 109.46528 * 299.99424 * 21 20 18 40 40 H 1.09001 * 109.47454 * 59.99156 * 21 20 18 41 41 H 1.08998 * 109.47237 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.46750 * 60.08621 * 22 20 18 43 43 H 1.09001 * 109.46853 * 180.08608 * 22 20 18 44 44 H 1.08998 * 109.47280 * 300.08779 * 22 20 18 45 45 H 1.09003 * 109.47066 * 54.72039 * 25 23 18 46 46 H 1.09008 * 109.46793 * 174.71136 * 25 23 18 47 47 H 1.08998 * 109.47247 * 294.71462 * 25 23 18 48 48 H 1.08992 * 109.46895 * 179.97438 * 26 14 13 49 49 H 1.09001 * 109.47065 * 300.00447 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1290 1.4430 -0.0482 5 6 1.5927 2.1335 1.2623 6 1 0.9035 2.9632 1.2086 7 6 2.0636 1.7065 2.4858 8 7 3.0269 0.8131 2.5443 9 14 1.3332 2.3968 4.0604 10 1 0.1873 1.5535 4.4859 11 1 0.8639 3.7853 3.8212 12 1 2.3676 2.4006 5.1259 13 7 1.4980 2.1535 -1.1658 14 6 2.3714 1.9892 -2.3354 15 1 2.8316 1.0014 -2.3093 16 6 3.4628 3.0611 -2.3117 17 6 2.8168 4.4475 -2.3483 18 6 1.9889 4.5909 -3.6269 19 1 2.6370 4.4689 -4.4949 20 6 1.3434 5.9776 -3.6639 21 6 0.5596 6.2098 -2.3706 22 6 2.4326 7.0437 -3.7985 23 6 0.8975 3.5190 -3.6508 24 1 0.2495 3.6409 -2.7828 25 6 0.0700 3.6620 -4.9297 26 6 1.5435 2.1324 -3.6142 27 1 -0.3633 -1.0266 0.0466 28 1 -0.3634 0.5537 0.8657 29 1 -0.3633 0.4730 -0.9124 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.4569 0.5094 1.7296 33 1 1.3519 3.1300 -0.9579 34 1 4.0525 2.9590 -1.4007 35 1 4.1105 2.9394 -3.1798 36 1 2.1687 4.5695 -1.4803 37 1 3.5943 5.2113 -2.3309 38 1 0.6662 6.0405 -4.5156 39 1 -0.2163 5.4503 -2.2747 40 1 1.2369 6.1468 -1.5189 41 1 0.0993 7.1975 -2.3971 42 1 2.9900 6.8791 -4.7206 43 1 1.9728 8.0317 -3.8233 44 1 3.1107 6.9798 -2.9476 45 1 0.7316 3.6335 -5.7956 46 1 -0.6461 2.8425 -4.9926 47 1 -0.4649 4.6115 -4.9121 48 1 2.1916 2.0109 -4.4820 49 1 0.7659 1.3687 -3.6311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547288391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:04 Heat of formation + Delta-G solvation = -46.740196 kcal Electronic energy + Delta-G solvation = -22706.369211 eV Core-core repulsion = 19859.304914 eV Total energy + Delta-G solvation = -2847.064298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79236 -36.51871 -34.43734 -32.62373 -31.40816 -30.05182 -28.21364 -27.11224 -26.02496 -25.08354 -23.45689 -23.04938 -21.00239 -19.94542 -19.08176 -18.00983 -16.99165 -15.33348 -14.90556 -14.61703 -14.42241 -14.24138 -13.72024 -13.42789 -13.28354 -13.15842 -12.74990 -12.64413 -12.33522 -12.18144 -12.05981 -11.77430 -11.56866 -11.34778 -11.18765 -11.06786 -10.99243 -10.80786 -10.76130 -10.64976 -10.37535 -10.11415 -10.10675 -9.94919 -9.85449 -9.67636 -9.54229 -9.39168 -8.46631 -8.26457 -7.22253 -6.32371 -4.02736 3.45039 3.46556 3.62381 4.53882 4.79797 4.88286 4.88843 5.20139 5.22483 5.30999 5.39874 5.46506 5.48436 5.55688 5.69878 5.73089 5.75589 5.81907 5.83739 5.90911 6.00141 6.03351 6.07548 6.11350 6.12251 6.22872 6.24674 6.31892 6.37350 6.42622 6.46419 6.50032 6.56915 6.63278 6.65171 6.70496 6.80916 6.88854 7.05914 7.17092 7.32291 7.58026 7.59607 7.97445 8.20416 8.59914 8.68766 8.92021 9.67665 11.04255 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.006034 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.536047 B = 4639.015546 C = 5234.570738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.105 4.105 3 C 0.204 3.796 4 H -0.008 1.008 5 C -0.592 4.592 6 H 0.051 0.949 7 C 0.025 3.975 8 N -0.911 5.911 9 Si 1.063 2.937 10 H -0.287 1.287 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.672 5.672 14 C 0.087 3.913 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.115 4.115 18 C -0.072 4.072 19 H 0.061 0.939 20 C -0.093 4.093 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.085 4.085 24 H 0.082 0.918 25 C -0.146 4.146 26 C -0.096 4.096 27 H 0.015 0.985 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.016 0.984 31 H 0.057 0.943 32 H 0.270 0.730 33 H 0.334 0.666 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 7.917 -13.366 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.143 4.143 3 C 0.096 3.904 4 H 0.010 0.990 5 C -0.631 4.631 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.892 3.108 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.304 5.304 14 C -0.025 4.025 15 H 0.082 0.918 16 C -0.185 4.185 17 C -0.153 4.153 18 C -0.091 4.091 19 H 0.079 0.921 20 C -0.111 4.111 21 C -0.209 4.209 22 C -0.205 4.205 23 C -0.104 4.104 24 H 0.101 0.899 25 C -0.203 4.203 26 C -0.134 4.134 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.927 7.280 -11.876 14.234 hybrid contribution 0.816 0.628 -1.412 1.748 sum -2.111 7.908 -13.289 15.607 Atomic orbital electron populations 1.21409 0.96672 0.97568 1.01927 1.21476 0.96115 0.98548 0.98194 1.19207 0.92062 0.91138 0.88004 0.99003 1.22004 1.30230 1.18727 0.92122 0.93060 1.25635 0.95337 0.95373 1.01649 1.70740 1.22064 1.29520 1.32370 0.83639 0.75945 0.75585 0.75647 1.21420 1.21584 1.21294 1.60738 1.47264 1.17349 1.05040 1.21498 0.91615 0.97078 0.92266 0.91789 1.22160 0.98975 0.96108 1.01282 1.21649 0.99014 0.96560 0.98065 1.21183 0.96366 0.93644 0.97895 0.92051 1.21176 0.96878 0.94635 0.98410 1.21955 1.00405 1.00911 0.97667 1.21887 0.98869 0.98245 1.01529 1.21122 0.96471 0.94456 0.98334 0.89926 1.21873 0.99653 1.01107 0.97659 1.21550 0.98925 0.96572 0.96397 0.96605 0.92423 0.93243 0.96512 0.92424 0.91853 0.84512 0.92088 0.92918 0.90951 0.92543 0.91352 0.92150 0.92043 0.93492 0.93194 0.93227 0.92454 0.93418 0.93022 0.92950 0.93251 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.52 37.16 0.35 -2.25 16 2 C -0.10 -2.48 5.52 -26.73 -0.15 -2.63 16 3 C 0.20 4.94 1.72 -68.86 -0.12 4.82 16 4 H -0.01 -0.20 6.50 -51.93 -0.34 -0.54 16 5 C -0.59 -15.85 7.31 -34.44 -0.25 -16.10 16 6 H 0.05 1.39 7.63 -52.49 -0.40 0.99 16 7 C 0.02 0.69 5.19 -17.82 -0.09 0.59 16 8 N -0.91 -26.83 12.82 55.43 0.71 -26.12 16 9 Si 1.06 24.98 29.91 -169.99 -5.08 19.89 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.67 -13.53 4.72 -100.94 -0.48 -14.01 16 14 C 0.09 1.50 2.65 -67.71 -0.18 1.32 16 15 H 0.06 1.21 7.38 -51.93 -0.38 0.82 16 16 C -0.15 -2.36 5.51 -26.73 -0.15 -2.51 16 17 C -0.12 -1.67 4.20 -26.73 -0.11 -1.78 16 18 C -0.07 -0.90 1.48 -90.62 -0.13 -1.04 16 19 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.09 -1.04 2.50 -90.62 -0.23 -1.27 16 21 C -0.15 -1.83 8.44 37.16 0.31 -1.51 16 22 C -0.15 -1.54 8.97 37.16 0.33 -1.20 16 23 C -0.09 -1.13 1.79 -90.62 -0.16 -1.29 16 24 H 0.08 1.25 5.71 -51.93 -0.30 0.95 16 25 C -0.15 -1.65 8.69 37.16 0.32 -1.33 16 26 C -0.10 -1.41 4.92 -26.72 -0.13 -1.54 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 1.36 7.22 -51.93 -0.37 0.99 16 29 H 0.05 1.03 7.62 -51.93 -0.40 0.64 16 30 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 31 H 0.06 1.51 6.43 -51.93 -0.33 1.18 16 32 H 0.27 7.98 6.30 -40.82 -0.26 7.73 16 33 H 0.33 6.81 5.06 -39.29 -0.20 6.61 16 34 H 0.06 1.14 7.58 -51.93 -0.39 0.74 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.17 4.44 -51.93 -0.23 0.94 16 37 H 0.06 0.77 6.61 -51.93 -0.34 0.43 16 38 H 0.07 0.73 6.23 -51.93 -0.32 0.41 16 39 H 0.06 0.76 6.61 -51.93 -0.34 0.42 16 40 H 0.06 0.80 6.33 -51.93 -0.33 0.47 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.63 6.60 -51.93 -0.34 0.28 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 47 H 0.05 0.55 6.58 -51.93 -0.34 0.21 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -27.31 347.17 -9.05 -36.35 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -9.05 Total: 6.36 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -0.38 Total: -27.71 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.23 Total: -40.12 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.31 -9.05 -36.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547288391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.386 kcal (2) G-P(sol) polarization free energy of solvation -27.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds