Wall clock time and date at job start Mon Mar 30 2020 07:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.47040 * 2 1 4 4 H 1.09002 * 109.46899 * 182.68799 * 3 2 1 5 5 C 1.50695 * 109.47131 * 62.68364 * 3 2 1 6 6 H 1.07997 * 120.00088 * 245.00802 * 5 3 2 7 7 C 1.37875 * 119.99872 * 65.02060 * 5 3 2 8 8 N 1.31516 * 120.00117 * 8.57853 * 7 5 3 9 9 Si 1.86801 * 120.00140 * 188.58702 * 7 5 3 10 10 H 1.48497 * 109.47308 * 89.99335 * 9 7 5 11 11 H 1.48504 * 109.46843 * 329.99527 * 9 7 5 12 12 H 1.48501 * 109.47025 * 209.99767 * 9 7 5 13 13 N 1.46907 * 109.46732 * 302.68447 * 3 2 1 14 14 C 1.46897 * 110.99897 * 271.74014 * 13 3 2 15 15 H 1.09001 * 109.47090 * 33.64761 * 14 13 3 16 16 C 1.52998 * 109.47479 * 273.64308 * 14 13 3 17 17 C 1.52997 * 109.46991 * 300.00506 * 16 14 13 18 18 C 1.53002 * 109.47397 * 299.99794 * 17 16 14 19 19 H 1.09005 * 109.46546 * 300.00409 * 18 17 16 20 20 C 1.52997 * 109.47727 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.46984 * 306.29278 * 20 18 17 22 22 C 1.53005 * 109.46926 * 66.28699 * 20 18 17 23 23 C 1.52999 * 109.47197 * 59.99925 * 18 17 16 24 24 H 1.09000 * 109.47046 * 60.00254 * 23 18 17 25 25 C 1.52997 * 109.47255 * 180.02562 * 23 18 17 26 26 C 1.53008 * 109.46841 * 153.64149 * 14 13 3 27 27 H 1.09000 * 109.47116 * 182.59648 * 1 2 3 28 28 H 1.09000 * 109.47718 * 302.60228 * 1 2 3 29 29 H 1.09005 * 109.47074 * 62.59665 * 1 2 3 30 30 H 1.08998 * 109.47493 * 240.00211 * 2 1 3 31 31 H 1.08996 * 109.46834 * 119.99074 * 2 1 3 32 32 H 0.96997 * 120.00263 * 5.10406 * 8 7 5 33 33 H 1.00897 * 110.99359 * 147.78859 * 13 3 2 34 34 H 1.08998 * 109.46739 * 59.99751 * 16 14 13 35 35 H 1.08997 * 109.46889 * 180.02562 * 16 14 13 36 36 H 1.09005 * 109.47606 * 59.99554 * 17 16 14 37 37 H 1.09001 * 109.47510 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.47295 * 186.28446 * 20 18 17 39 39 H 1.09000 * 109.46528 * 299.99424 * 21 20 18 40 40 H 1.09001 * 109.47454 * 59.99156 * 21 20 18 41 41 H 1.08998 * 109.47237 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.46750 * 60.08621 * 22 20 18 43 43 H 1.09001 * 109.46853 * 180.08608 * 22 20 18 44 44 H 1.08998 * 109.47280 * 300.08779 * 22 20 18 45 45 H 1.09003 * 109.47066 * 54.72039 * 25 23 18 46 46 H 1.09008 * 109.46793 * 174.71136 * 25 23 18 47 47 H 1.08998 * 109.47247 * 294.71462 * 25 23 18 48 48 H 1.08992 * 109.46895 * 179.97438 * 26 14 13 49 49 H 1.09001 * 109.47065 * 300.00447 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1290 1.4430 -0.0482 5 6 1.5927 2.1335 1.2623 6 1 0.9035 2.9632 1.2086 7 6 2.0636 1.7065 2.4858 8 7 3.0269 0.8131 2.5443 9 14 1.3332 2.3968 4.0604 10 1 0.1873 1.5535 4.4859 11 1 0.8639 3.7853 3.8212 12 1 2.3676 2.4006 5.1259 13 7 1.4980 2.1535 -1.1658 14 6 2.3714 1.9892 -2.3354 15 1 2.8316 1.0014 -2.3093 16 6 3.4628 3.0611 -2.3117 17 6 2.8168 4.4475 -2.3483 18 6 1.9889 4.5909 -3.6269 19 1 2.6370 4.4689 -4.4949 20 6 1.3434 5.9776 -3.6639 21 6 0.5596 6.2098 -2.3706 22 6 2.4326 7.0437 -3.7985 23 6 0.8975 3.5190 -3.6508 24 1 0.2495 3.6409 -2.7828 25 6 0.0700 3.6620 -4.9297 26 6 1.5435 2.1324 -3.6142 27 1 -0.3633 -1.0266 0.0466 28 1 -0.3634 0.5537 0.8657 29 1 -0.3633 0.4730 -0.9124 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.4569 0.5094 1.7296 33 1 1.3519 3.1300 -0.9579 34 1 4.0525 2.9590 -1.4007 35 1 4.1105 2.9394 -3.1798 36 1 2.1687 4.5695 -1.4803 37 1 3.5943 5.2113 -2.3309 38 1 0.6662 6.0405 -4.5156 39 1 -0.2163 5.4503 -2.2747 40 1 1.2369 6.1468 -1.5189 41 1 0.0993 7.1975 -2.3971 42 1 2.9900 6.8791 -4.7206 43 1 1.9728 8.0317 -3.8233 44 1 3.1107 6.9798 -2.9476 45 1 0.7316 3.6335 -5.7956 46 1 -0.6461 2.8425 -4.9926 47 1 -0.4649 4.6115 -4.9121 48 1 2.1916 2.0109 -4.4820 49 1 0.7659 1.3687 -3.6311 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547288391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:03 Heat of formation + Delta-G solvation = -59.709283 kcal Electronic energy + Delta-G solvation = -22706.931593 eV Core-core repulsion = 19859.304914 eV Total energy + Delta-G solvation = -2847.626679 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00972 -38.12109 -35.91048 -33.93499 -33.21070 -31.58209 -29.62612 -28.01985 -27.09427 -27.02005 -25.36554 -24.25978 -22.21061 -21.60822 -20.37762 -19.33243 -18.91574 -16.62737 -16.27345 -16.10403 -15.77405 -15.52849 -15.45208 -14.96693 -14.72717 -14.52482 -14.09087 -13.95019 -13.75482 -13.43251 -13.27965 -13.13771 -12.84140 -12.67405 -12.62821 -12.45030 -12.41535 -12.14371 -12.00400 -11.96987 -11.92192 -11.79407 -11.68114 -11.59575 -11.36488 -11.00568 -10.74059 -10.58433 -10.54152 -10.36174 -8.95336 -8.55707 -6.25886 1.52515 1.59758 1.76554 2.57535 3.22535 3.60537 3.77739 3.81808 3.85950 4.16678 4.20897 4.27446 4.38858 4.44818 4.50123 4.56212 4.58343 4.65458 4.67873 4.73482 4.79840 4.84311 4.87574 4.93567 4.95659 5.04712 5.07189 5.11742 5.12356 5.17277 5.20534 5.23801 5.26971 5.32647 5.40279 5.42417 5.48057 5.49980 5.58702 5.62268 5.67998 5.71697 5.79562 5.95901 6.15873 6.55584 6.70195 6.95614 7.53081 8.80682 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019665 B = 0.006034 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.536047 B = 4639.015546 C = 5234.570738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.100 4.100 3 C 0.211 3.789 4 H -0.043 1.043 5 C -0.593 4.593 6 H 0.047 0.953 7 C -0.024 4.024 8 N -0.935 5.935 9 Si 1.106 2.894 10 H -0.276 1.276 11 H -0.272 1.272 12 H -0.288 1.288 13 N -0.663 5.663 14 C 0.084 3.916 15 H 0.044 0.956 16 C -0.141 4.141 17 C -0.110 4.110 18 C -0.064 4.064 19 H 0.073 0.927 20 C -0.087 4.087 21 C -0.152 4.152 22 C -0.147 4.147 23 C -0.082 4.082 24 H 0.062 0.938 25 C -0.140 4.140 26 C -0.088 4.088 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.256 0.744 33 H 0.333 0.667 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.774 9.262 -15.282 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.102 3.898 4 H -0.025 1.025 5 C -0.632 4.632 6 H 0.065 0.935 7 C -0.222 4.222 8 N -0.573 5.573 9 Si 0.929 3.071 10 H -0.202 1.202 11 H -0.197 1.197 12 H -0.215 1.215 13 N -0.295 5.295 14 C -0.027 4.027 15 H 0.062 0.938 16 C -0.180 4.180 17 C -0.147 4.147 18 C -0.083 4.083 19 H 0.092 0.908 20 C -0.106 4.106 21 C -0.209 4.209 22 C -0.204 4.204 23 C -0.101 4.101 24 H 0.080 0.920 25 C -0.197 4.197 26 C -0.126 4.126 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.154 0.846 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.156 8.630 -13.822 16.816 hybrid contribution 1.236 0.203 -0.861 1.520 sum -2.920 8.832 -14.683 17.382 Atomic orbital electron populations 1.21282 0.94907 0.98747 1.01441 1.21369 0.97522 0.97761 0.97216 1.18998 0.89984 0.91938 0.88904 1.02542 1.22265 1.29328 1.18358 0.93228 0.93519 1.26934 0.95097 0.95153 1.05057 1.70858 1.23568 1.31291 1.31598 0.83073 0.75560 0.76094 0.72339 1.20203 1.19661 1.21453 1.60714 1.47538 1.16914 1.04323 1.21590 0.92134 0.96494 0.92487 0.93769 1.22082 0.98578 0.96948 1.00398 1.21595 0.99083 0.95411 0.98627 1.21129 0.95964 0.94396 0.96790 0.90820 1.21149 0.97192 0.93898 0.98318 1.21942 0.99962 1.01369 0.97616 1.21872 0.98478 0.98454 1.01588 1.21067 0.96535 0.93611 0.98865 0.91971 1.21814 0.99558 1.01705 0.96634 1.21485 0.98603 0.97505 0.95039 0.94457 0.94420 0.92169 0.95424 0.95400 0.93336 0.84641 0.95644 0.90829 0.93099 0.91713 0.89861 0.93083 0.93769 0.92200 0.92152 0.92185 0.93492 0.92091 0.93084 0.91899 0.91236 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.52 71.98 0.69 -3.95 16 2 C -0.10 -4.84 5.52 30.60 0.17 -4.68 16 3 C 0.21 10.58 1.72 44.17 0.08 10.66 16 4 H -0.04 -2.42 6.50 -2.39 -0.02 -2.44 16 5 C -0.59 -32.56 7.31 25.60 0.19 -32.38 16 6 H 0.05 2.56 7.63 -2.91 -0.02 2.54 16 7 C -0.02 -1.34 5.19 84.65 0.44 -0.90 16 8 N -0.94 -56.97 12.82 21.45 0.27 -56.69 16 9 Si 1.11 50.61 29.91 68.60 2.05 52.66 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 13 N -0.66 -27.24 4.72 -473.28 -2.23 -29.48 16 14 C 0.08 2.92 2.65 44.92 0.12 3.04 16 15 H 0.04 1.71 7.38 -2.39 -0.02 1.69 16 16 C -0.14 -4.60 5.51 30.59 0.17 -4.43 16 17 C -0.11 -3.11 4.20 30.59 0.13 -2.98 16 18 C -0.06 -1.46 1.48 -10.79 -0.02 -1.48 16 19 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 20 C -0.09 -1.73 2.50 -10.79 -0.03 -1.75 16 21 C -0.15 -3.43 8.44 71.98 0.61 -2.82 16 22 C -0.15 -2.64 8.97 71.98 0.65 -1.99 16 23 C -0.08 -2.01 1.79 -10.79 -0.02 -2.02 16 24 H 0.06 1.80 5.71 -2.39 -0.01 1.79 16 25 C -0.14 -2.71 8.69 71.98 0.63 -2.08 16 26 C -0.09 -2.44 4.92 30.60 0.15 -2.29 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.04 1.76 7.22 -2.39 -0.02 1.75 16 29 H 0.06 2.46 7.62 -2.38 -0.02 2.44 16 30 H 0.03 1.24 7.72 -2.39 -0.02 1.22 16 31 H 0.03 1.50 6.43 -2.39 -0.02 1.48 16 32 H 0.26 15.95 6.30 -92.71 -0.58 15.37 16 33 H 0.33 13.91 5.06 -89.70 -0.45 13.46 16 34 H 0.02 0.99 7.58 -2.39 -0.02 0.97 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 1.68 4.44 -2.38 -0.01 1.66 16 37 H 0.06 1.72 6.61 -2.39 -0.02 1.71 16 38 H 0.08 1.46 6.23 -2.39 -0.01 1.44 16 39 H 0.05 1.23 6.61 -2.39 -0.02 1.22 16 40 H 0.04 1.14 6.33 -2.39 -0.02 1.12 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.05 0.94 6.60 -2.39 -0.02 0.92 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.06 1.10 6.58 -2.39 -0.02 1.08 16 48 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -60.19 347.17 4.66 -55.53 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.63 Total: 28.03 kcal Atomic # 6 Polarization: -53.99 SS G_CDS: 3.94 Total: -50.04 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.96 Total: -86.17 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.05 Total: 52.66 kcal Total: -60.19 4.66 -55.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547288391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.182 kcal (2) G-P(sol) polarization free energy of solvation -60.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds