Wall clock time and date at job start Mon Mar 30 2020 07:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47033 * 2 1 4 4 H 1.09003 * 109.47205 * 306.24033 * 3 2 1 5 5 C 1.50699 * 109.47050 * 186.23736 * 3 2 1 6 6 H 1.07999 * 119.99995 * 239.99341 * 5 3 2 7 7 C 1.37879 * 119.99939 * 60.00411 * 5 3 2 8 8 N 1.31505 * 119.99935 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99970 * 359.97438 * 7 5 3 10 10 H 1.48494 * 109.47168 * 270.00487 * 9 7 5 11 11 H 1.48491 * 109.46698 * 150.00515 * 9 7 5 12 12 H 1.48496 * 109.46953 * 30.00489 * 9 7 5 13 13 N 1.46907 * 109.47074 * 66.23675 * 3 2 1 14 14 C 1.46902 * 110.99839 * 245.17476 * 13 3 2 15 15 H 1.08998 * 109.47379 * 4.90900 * 14 13 3 16 16 C 1.53001 * 109.46477 * 244.91539 * 14 13 3 17 17 C 1.52998 * 109.47652 * 299.99995 * 16 14 13 18 18 C 1.53007 * 109.46904 * 300.00409 * 17 16 14 19 19 H 1.08991 * 109.46991 * 299.99574 * 18 17 16 20 20 C 1.52998 * 109.46901 * 179.97438 * 18 17 16 21 21 C 1.53002 * 109.46928 * 60.00143 * 20 18 17 22 22 C 1.52997 * 109.46817 * 180.02562 * 20 18 17 23 23 C 1.53000 * 109.46855 * 59.99679 * 18 17 16 24 24 H 1.09000 * 109.46713 * 179.97438 * 23 18 17 25 25 C 1.52999 * 109.47400 * 60.00058 * 23 18 17 26 26 C 1.52992 * 109.47322 * 299.99864 * 23 18 17 27 27 H 1.09005 * 109.47108 * 292.37684 * 1 2 3 28 28 H 1.08998 * 109.47362 * 52.38208 * 1 2 3 29 29 H 1.09000 * 109.47246 * 172.38515 * 1 2 3 30 30 H 1.08994 * 109.47409 * 240.00070 * 2 1 3 31 31 H 1.08998 * 109.47213 * 119.99758 * 2 1 3 32 32 H 0.97008 * 120.00163 * 179.97438 * 8 7 5 33 33 H 1.00897 * 110.99425 * 121.21564 * 13 3 2 34 34 H 1.09002 * 109.47664 * 60.00400 * 16 14 13 35 35 H 1.09001 * 109.46862 * 179.97438 * 16 14 13 36 36 H 1.08998 * 109.47576 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47112 * 60.00001 * 17 16 14 38 38 H 1.09001 * 109.47572 * 299.99872 * 20 18 17 39 39 H 1.09003 * 109.47053 * 60.00026 * 21 20 18 40 40 H 1.09004 * 109.46954 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.46941 * 299.99496 * 21 20 18 42 42 H 1.09000 * 109.47699 * 60.00252 * 22 20 18 43 43 H 1.09004 * 109.47278 * 180.02562 * 22 20 18 44 44 H 1.09003 * 109.47445 * 300.00146 * 22 20 18 45 45 H 1.09002 * 109.47102 * 312.36271 * 25 23 18 46 46 H 1.09004 * 109.47304 * 72.36022 * 25 23 18 47 47 H 1.08994 * 109.47407 * 192.35819 * 25 23 18 48 48 H 1.09001 * 109.47276 * 300.00474 * 26 23 18 49 49 H 1.09007 * 109.47419 * 180.02562 * 26 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5883 1.9876 -0.8289 5 6 3.5391 1.4454 -0.1544 6 1 4.1600 1.8845 0.6124 7 6 4.1178 0.8875 -1.2746 8 7 5.4259 0.8895 -1.4091 9 14 3.0436 0.1276 -2.6007 10 1 2.8289 -1.3106 -2.2999 11 1 3.7143 0.2630 -3.9186 12 1 1.7339 0.8265 -2.6376 13 7 1.6770 2.0903 1.2676 14 6 0.7268 3.1881 1.0446 15 1 0.4414 3.2138 -0.0070 16 6 1.3831 4.5161 1.4274 17 6 1.7837 4.4804 2.9036 18 6 0.5384 4.2599 3.7648 19 1 -0.1665 5.0745 3.5994 20 6 0.9392 4.2235 5.2409 21 6 1.5957 5.5513 5.6240 22 6 -0.3060 4.0024 6.1020 23 6 -0.1178 2.9318 3.3820 24 1 -1.0046 2.7746 3.9958 25 6 0.8719 1.7883 3.6142 26 6 -0.5184 2.9677 1.9059 27 1 -0.3633 0.3912 0.9503 28 1 -0.3634 0.6273 -0.8140 29 1 -0.3634 -1.0186 -0.1362 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8332 0.4967 -2.1971 33 1 2.4981 2.4160 1.7552 34 1 2.2702 4.6733 0.8139 35 1 0.6782 5.3309 1.2615 36 1 2.2509 5.4266 3.1764 37 1 2.4888 3.6657 3.0691 38 1 1.6440 3.4086 5.4061 39 1 0.8908 6.3662 5.4589 40 1 1.8808 5.5255 6.6758 41 1 2.4829 5.7083 5.0105 42 1 -0.7734 3.0563 5.8290 43 1 -0.0206 3.9769 7.1537 44 1 -1.0113 4.8169 5.9370 45 1 1.8370 2.0492 3.1799 46 1 0.9887 1.6206 4.6849 47 1 0.4950 0.8804 3.1433 48 1 -1.2234 3.7824 1.7404 49 1 -0.9863 2.0217 1.6332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547288392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:06 Heat of formation + Delta-G solvation = -16.185359 kcal Electronic energy + Delta-G solvation = -22853.297789 eV Core-core repulsion = 20007.558449 eV Total energy + Delta-G solvation = -2845.739340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95066 -36.49353 -34.34447 -31.99701 -31.78606 -30.49806 -28.80823 -27.10503 -26.70506 -25.55979 -22.50112 -22.37769 -21.40448 -19.93472 -19.46851 -18.06404 -16.89307 -15.86684 -15.20486 -14.93780 -14.25573 -13.82909 -13.76179 -13.48380 -13.20300 -13.11146 -12.62458 -12.61537 -12.38029 -12.26652 -12.16356 -11.90749 -11.65771 -11.41503 -11.20407 -11.11525 -11.05844 -10.78937 -10.70955 -10.65123 -10.50845 -10.37831 -10.07858 -9.88879 -9.76223 -9.50410 -9.34648 -9.23530 -8.97627 -8.54943 -7.21633 -6.10302 -4.10120 3.28048 3.38083 3.40514 4.39213 4.80162 4.87669 4.99997 5.12190 5.19882 5.26633 5.39912 5.50642 5.60757 5.65873 5.68959 5.77714 5.80044 5.84189 5.85614 5.92499 6.02003 6.05217 6.08013 6.09916 6.17136 6.18152 6.25399 6.28216 6.40813 6.42420 6.45228 6.48299 6.55726 6.67377 6.73504 6.75380 6.80779 6.83974 6.85369 7.04367 7.11865 7.29008 7.48141 7.60510 8.08588 8.41643 8.62225 8.94746 9.53323 11.02417 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.005649 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.728390 B = 4955.732936 C = 5389.624175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C 0.180 3.820 4 H 0.015 0.985 5 C -0.530 4.530 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.300 1.300 12 H -0.266 1.266 13 N -0.663 5.663 14 C 0.088 3.912 15 H 0.056 0.944 16 C -0.137 4.137 17 C -0.115 4.115 18 C -0.072 4.072 19 H 0.059 0.941 20 C -0.093 4.093 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.077 4.077 24 H 0.055 0.945 25 C -0.135 4.135 26 C -0.102 4.102 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.263 0.737 33 H 0.341 0.659 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.023 0.977 47 H 0.055 0.945 48 H 0.046 0.954 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.463 6.451 10.711 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.070 3.930 4 H 0.032 0.968 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.228 1.228 12 H -0.191 1.191 13 N -0.297 5.297 14 C -0.023 4.023 15 H 0.075 0.925 16 C -0.175 4.175 17 C -0.153 4.153 18 C -0.090 4.090 19 H 0.077 0.923 20 C -0.112 4.112 21 C -0.206 4.206 22 C -0.204 4.204 23 C -0.095 4.095 24 H 0.073 0.927 25 C -0.193 4.193 26 C -0.140 4.140 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.042 0.958 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.781 5.948 10.746 17.019 hybrid contribution 0.125 0.187 -1.282 1.302 sum -11.656 6.135 9.464 16.219 Atomic orbital electron populations 1.21844 0.98188 0.99099 1.01258 1.21824 0.93245 0.99782 1.00150 1.19786 0.95090 0.90880 0.87201 0.96779 1.21481 0.89957 1.39096 1.06298 0.90795 1.24971 0.94757 0.95354 0.97941 1.69905 1.09457 1.45407 1.28951 0.86802 0.80715 0.79844 0.80504 1.20547 1.22814 1.19141 1.61354 1.17916 1.28173 1.22295 1.21622 0.93454 0.89611 0.97631 0.92541 1.22029 1.00737 0.98216 0.96565 1.21657 0.97670 1.01488 0.94465 1.21166 0.96954 0.97591 0.93330 0.92295 1.21167 0.97239 0.97847 0.94930 1.21903 1.00705 0.97311 1.00668 1.21870 0.97884 1.01647 0.98974 1.21016 0.97931 0.94941 0.95611 0.92652 1.22117 1.01562 0.97789 0.97787 1.21670 0.96725 1.00627 0.95016 0.91969 0.94431 0.95007 0.94234 0.92095 0.92690 0.83629 0.91761 0.92671 0.92532 0.90971 0.90776 0.93207 0.93331 0.92317 0.92287 0.93393 0.93245 0.89514 0.95825 0.92575 0.93540 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.73 37.16 0.36 -2.32 16 2 C -0.11 -2.43 5.10 -26.73 -0.14 -2.56 16 3 C 0.18 4.06 1.76 -68.86 -0.12 3.94 16 4 H 0.01 0.35 5.91 -51.93 -0.31 0.04 16 5 C -0.53 -14.33 9.19 -34.44 -0.32 -14.65 16 6 H 0.07 2.15 7.58 -52.49 -0.40 1.76 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 9 Si 0.89 22.12 24.42 -169.99 -4.15 17.97 16 10 H -0.28 -6.80 6.82 56.52 0.39 -6.42 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 12 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 13 N -0.66 -12.34 3.06 -100.95 -0.31 -12.65 16 14 C 0.09 1.43 3.01 -67.71 -0.20 1.22 16 15 H 0.06 1.02 6.87 -51.93 -0.36 0.66 16 16 C -0.14 -2.04 5.42 -26.73 -0.14 -2.18 16 17 C -0.12 -1.54 4.48 -26.73 -0.12 -1.66 16 18 C -0.07 -0.87 1.55 -90.62 -0.14 -1.01 16 19 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 20 C -0.09 -1.02 2.17 -90.62 -0.20 -1.22 16 21 C -0.15 -1.50 8.84 37.16 0.33 -1.18 16 22 C -0.15 -1.46 8.84 37.16 0.33 -1.13 16 23 C -0.08 -0.99 2.37 -90.62 -0.21 -1.21 16 24 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 25 C -0.14 -1.95 7.00 37.16 0.26 -1.69 16 26 C -0.10 -1.44 5.28 -26.74 -0.14 -1.58 16 27 H 0.06 1.06 6.02 -51.93 -0.31 0.75 16 28 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.93 3.21 -51.93 -0.17 0.76 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.34 6.61 4.37 -39.29 -0.17 6.44 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 37 H 0.07 1.06 5.07 -51.93 -0.26 0.80 16 38 H 0.07 0.89 6.72 -51.93 -0.35 0.54 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 42 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 1.38 3.23 -51.93 -0.17 1.21 16 46 H 0.02 0.31 7.14 -51.93 -0.37 -0.06 16 47 H 0.06 0.89 8.01 -51.93 -0.42 0.47 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.95 6.16 -51.92 -0.32 0.63 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -27.62 335.94 -7.94 -35.56 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.77 Total: 5.77 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -0.55 Total: -25.29 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.46 Total: -39.07 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.15 Total: 17.97 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.62 -7.94 -35.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547288392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.377 kcal (2) G-P(sol) polarization free energy of solvation -27.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds