Wall clock time and date at job start Mon Mar 30 2020 07:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47033 * 2 1 4 4 H 1.09003 * 109.47205 * 306.24033 * 3 2 1 5 5 C 1.50699 * 109.47050 * 186.23736 * 3 2 1 6 6 H 1.07999 * 119.99995 * 239.99341 * 5 3 2 7 7 C 1.37879 * 119.99939 * 60.00411 * 5 3 2 8 8 N 1.31505 * 119.99935 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99970 * 359.97438 * 7 5 3 10 10 H 1.48494 * 109.47168 * 270.00487 * 9 7 5 11 11 H 1.48491 * 109.46698 * 150.00515 * 9 7 5 12 12 H 1.48496 * 109.46953 * 30.00489 * 9 7 5 13 13 N 1.46907 * 109.47074 * 66.23675 * 3 2 1 14 14 C 1.46902 * 110.99839 * 245.17476 * 13 3 2 15 15 H 1.08998 * 109.47379 * 4.90900 * 14 13 3 16 16 C 1.53001 * 109.46477 * 244.91539 * 14 13 3 17 17 C 1.52998 * 109.47652 * 299.99995 * 16 14 13 18 18 C 1.53007 * 109.46904 * 300.00409 * 17 16 14 19 19 H 1.08991 * 109.46991 * 299.99574 * 18 17 16 20 20 C 1.52998 * 109.46901 * 179.97438 * 18 17 16 21 21 C 1.53002 * 109.46928 * 60.00143 * 20 18 17 22 22 C 1.52997 * 109.46817 * 180.02562 * 20 18 17 23 23 C 1.53000 * 109.46855 * 59.99679 * 18 17 16 24 24 H 1.09000 * 109.46713 * 179.97438 * 23 18 17 25 25 C 1.52999 * 109.47400 * 60.00058 * 23 18 17 26 26 C 1.52992 * 109.47322 * 299.99864 * 23 18 17 27 27 H 1.09005 * 109.47108 * 292.37684 * 1 2 3 28 28 H 1.08998 * 109.47362 * 52.38208 * 1 2 3 29 29 H 1.09000 * 109.47246 * 172.38515 * 1 2 3 30 30 H 1.08994 * 109.47409 * 240.00070 * 2 1 3 31 31 H 1.08998 * 109.47213 * 119.99758 * 2 1 3 32 32 H 0.97008 * 120.00163 * 179.97438 * 8 7 5 33 33 H 1.00897 * 110.99425 * 121.21564 * 13 3 2 34 34 H 1.09002 * 109.47664 * 60.00400 * 16 14 13 35 35 H 1.09001 * 109.46862 * 179.97438 * 16 14 13 36 36 H 1.08998 * 109.47576 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.47112 * 60.00001 * 17 16 14 38 38 H 1.09001 * 109.47572 * 299.99872 * 20 18 17 39 39 H 1.09003 * 109.47053 * 60.00026 * 21 20 18 40 40 H 1.09004 * 109.46954 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.46941 * 299.99496 * 21 20 18 42 42 H 1.09000 * 109.47699 * 60.00252 * 22 20 18 43 43 H 1.09004 * 109.47278 * 180.02562 * 22 20 18 44 44 H 1.09003 * 109.47445 * 300.00146 * 22 20 18 45 45 H 1.09002 * 109.47102 * 312.36271 * 25 23 18 46 46 H 1.09004 * 109.47304 * 72.36022 * 25 23 18 47 47 H 1.08994 * 109.47407 * 192.35819 * 25 23 18 48 48 H 1.09001 * 109.47276 * 300.00474 * 26 23 18 49 49 H 1.09007 * 109.47419 * 180.02562 * 26 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5883 1.9876 -0.8289 5 6 3.5391 1.4454 -0.1544 6 1 4.1600 1.8845 0.6124 7 6 4.1178 0.8875 -1.2746 8 7 5.4259 0.8895 -1.4091 9 14 3.0436 0.1276 -2.6007 10 1 2.8289 -1.3106 -2.2999 11 1 3.7143 0.2630 -3.9186 12 1 1.7339 0.8265 -2.6376 13 7 1.6770 2.0903 1.2676 14 6 0.7268 3.1881 1.0446 15 1 0.4414 3.2138 -0.0070 16 6 1.3831 4.5161 1.4274 17 6 1.7837 4.4804 2.9036 18 6 0.5384 4.2599 3.7648 19 1 -0.1665 5.0745 3.5994 20 6 0.9392 4.2235 5.2409 21 6 1.5957 5.5513 5.6240 22 6 -0.3060 4.0024 6.1020 23 6 -0.1178 2.9318 3.3820 24 1 -1.0046 2.7746 3.9958 25 6 0.8719 1.7883 3.6142 26 6 -0.5184 2.9677 1.9059 27 1 -0.3633 0.3912 0.9503 28 1 -0.3634 0.6273 -0.8140 29 1 -0.3634 -1.0186 -0.1362 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8332 0.4967 -2.1971 33 1 2.4981 2.4160 1.7552 34 1 2.2702 4.6733 0.8139 35 1 0.6782 5.3309 1.2615 36 1 2.2509 5.4266 3.1764 37 1 2.4888 3.6657 3.0691 38 1 1.6440 3.4086 5.4061 39 1 0.8908 6.3662 5.4589 40 1 1.8808 5.5255 6.6758 41 1 2.4829 5.7083 5.0105 42 1 -0.7734 3.0563 5.8290 43 1 -0.0206 3.9769 7.1537 44 1 -1.0113 4.8169 5.9370 45 1 1.8370 2.0492 3.1799 46 1 0.9887 1.6206 4.6849 47 1 0.4950 0.8804 3.1433 48 1 -1.2234 3.7824 1.7404 49 1 -0.9863 2.0217 1.6332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547288392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:05 Heat of formation + Delta-G solvation = -30.300766 kcal Electronic energy + Delta-G solvation = -22853.909879 eV Core-core repulsion = 20007.558449 eV Total energy + Delta-G solvation = -2846.351430 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.12444 -37.92611 -35.71823 -34.02690 -32.98558 -31.82936 -30.15773 -28.37629 -27.90394 -26.83799 -24.29972 -23.48272 -22.57150 -21.63221 -20.59706 -19.33647 -18.70150 -17.42392 -16.71489 -16.13206 -15.66917 -15.32504 -15.00440 -14.74074 -14.61400 -14.38885 -14.13996 -13.98231 -13.72248 -13.50653 -13.40798 -13.07152 -12.95976 -12.91644 -12.62048 -12.34373 -12.26847 -12.24851 -11.99833 -11.92541 -11.76983 -11.63361 -11.57215 -11.29231 -11.09498 -11.00041 -10.89090 -10.77839 -10.49533 -10.44811 -8.78426 -8.31278 -6.34641 1.29168 1.33221 1.43718 2.29922 3.04113 3.59751 3.82169 3.94861 3.97580 4.24221 4.33271 4.38095 4.45406 4.50547 4.56342 4.59482 4.65763 4.66784 4.76661 4.77657 4.80836 4.90728 4.96255 5.02930 5.03771 5.11215 5.13560 5.17675 5.20650 5.22422 5.25726 5.34020 5.35964 5.38486 5.42354 5.49934 5.55750 5.56516 5.63667 5.64366 5.70165 5.76679 5.82030 6.09486 6.10926 6.53960 6.74769 6.95509 7.33569 8.84398 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027506 B = 0.005649 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.728390 B = 4955.732936 C = 5389.624175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.186 3.814 4 H 0.004 0.996 5 C -0.528 4.528 6 H 0.038 0.962 7 C 0.016 3.984 8 N -0.947 5.947 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.302 1.302 12 H -0.251 1.251 13 N -0.651 5.651 14 C 0.084 3.916 15 H 0.041 0.959 16 C -0.133 4.133 17 C -0.111 4.111 18 C -0.064 4.064 19 H 0.070 0.930 20 C -0.092 4.092 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.072 4.072 24 H 0.072 0.928 25 C -0.131 4.131 26 C -0.096 4.096 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.024 0.976 31 H 0.053 0.947 32 H 0.264 0.736 33 H 0.335 0.665 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.032 0.968 47 H 0.041 0.959 48 H 0.066 0.934 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.441 6.903 11.622 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.076 3.924 4 H 0.022 0.978 5 C -0.567 4.567 6 H 0.056 0.944 7 C -0.182 4.182 8 N -0.588 5.588 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.231 1.231 12 H -0.175 1.175 13 N -0.284 5.284 14 C -0.027 4.027 15 H 0.059 0.941 16 C -0.171 4.171 17 C -0.149 4.149 18 C -0.082 4.082 19 H 0.089 0.911 20 C -0.110 4.110 21 C -0.204 4.204 22 C -0.201 4.201 23 C -0.090 4.090 24 H 0.091 0.909 25 C -0.188 4.188 26 C -0.134 4.134 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.788 6.407 11.674 19.900 hybrid contribution 1.121 0.114 -1.480 1.860 sum -13.666 6.521 10.194 18.254 Atomic orbital electron populations 1.21741 0.95043 1.00580 1.02033 1.21741 0.96033 0.98205 0.99041 1.19640 0.91853 0.92225 0.88644 0.97815 1.21832 0.92325 1.37504 1.04989 0.94379 1.25776 0.95801 0.96184 1.00405 1.70048 1.11400 1.47340 1.29969 0.85834 0.79498 0.79503 0.77400 1.19560 1.23051 1.17518 1.61471 1.17748 1.29330 1.19826 1.21737 0.93956 0.89497 0.97473 0.94094 1.21972 0.99933 0.98098 0.97145 1.21616 0.98248 1.01299 0.93717 1.21103 0.96095 0.97333 0.93714 0.91147 1.21129 0.97658 0.97912 0.94334 1.21883 1.00502 0.97023 1.01028 1.21838 0.97278 1.01816 0.99122 1.20993 0.98128 0.94738 0.95141 0.90933 1.22017 1.00894 0.97792 0.98092 1.21618 0.95491 1.01230 0.95054 0.90782 0.94267 0.92991 0.95750 0.92809 0.92694 0.84315 0.94497 0.90645 0.91569 0.92864 0.92103 0.92376 0.92560 0.93107 0.92506 0.92674 0.92400 0.91448 0.94873 0.93994 0.91530 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.73 71.98 0.70 -3.94 16 2 C -0.11 -4.76 5.10 30.60 0.16 -4.60 16 3 C 0.19 8.47 1.76 44.17 0.08 8.54 16 4 H 0.00 0.20 5.91 -2.39 -0.01 0.19 16 5 C -0.53 -29.58 9.19 25.60 0.24 -29.34 16 6 H 0.04 2.35 7.58 -2.91 -0.02 2.33 16 7 C 0.02 0.94 5.45 84.66 0.46 1.40 16 8 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 9 Si 0.95 46.01 24.42 68.60 1.68 47.69 16 10 H -0.27 -12.57 6.82 99.48 0.68 -11.89 16 11 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 12 H -0.25 -11.42 6.53 99.48 0.65 -10.77 16 13 N -0.65 -24.35 3.06 -473.29 -1.45 -25.80 16 14 C 0.08 2.65 3.01 44.91 0.14 2.78 16 15 H 0.04 1.44 6.87 -2.39 -0.02 1.42 16 16 C -0.13 -3.86 5.42 30.59 0.17 -3.70 16 17 C -0.11 -2.88 4.48 30.60 0.14 -2.74 16 18 C -0.06 -1.38 1.55 -10.79 -0.02 -1.40 16 19 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 20 C -0.09 -1.80 2.17 -10.79 -0.02 -1.83 16 21 C -0.15 -2.65 8.84 71.98 0.64 -2.01 16 22 C -0.14 -2.41 8.84 71.98 0.64 -1.77 16 23 C -0.07 -1.68 2.37 -10.80 -0.03 -1.70 16 24 H 0.07 1.52 6.43 -2.39 -0.02 1.51 16 25 C -0.13 -3.62 7.00 71.98 0.50 -3.12 16 26 C -0.10 -2.46 5.28 30.59 0.16 -2.29 16 27 H 0.07 2.33 6.02 -2.38 -0.01 2.32 16 28 H 0.04 1.31 8.12 -2.39 -0.02 1.29 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.02 1.11 3.21 -2.39 -0.01 1.10 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 33 H 0.34 13.48 4.37 -89.70 -0.39 13.09 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.58 6.43 -2.39 -0.02 1.57 16 37 H 0.05 1.59 5.07 -2.39 -0.01 1.58 16 38 H 0.06 1.37 6.72 -2.39 -0.02 1.35 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.05 0.98 6.43 -2.39 -0.02 0.97 16 42 H 0.06 0.98 6.43 -2.39 -0.02 0.97 16 43 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 2.15 3.23 -2.39 -0.01 2.14 16 46 H 0.03 0.84 7.14 -2.38 -0.02 0.82 16 47 H 0.04 1.26 8.01 -2.39 -0.02 1.24 16 48 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.06 1.61 6.16 -2.38 -0.01 1.60 16 Total: -1.00 -60.73 335.94 4.91 -55.83 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.44 Total: 27.04 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 3.94 Total: -45.73 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -1.15 Total: -84.83 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.68 Total: 47.69 kcal Total: -60.73 4.91 -55.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547288392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.527 kcal (2) G-P(sol) polarization free energy of solvation -60.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds