Wall clock time and date at job start Mon Mar 30 2020 07:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47284 * 2 1 4 4 H 1.08995 * 109.46715 * 303.40787 * 3 2 1 5 5 C 1.50701 * 109.46885 * 183.40930 * 3 2 1 6 6 H 1.08000 * 120.00072 * 245.44278 * 5 3 2 7 7 C 1.37875 * 120.00013 * 65.44970 * 5 3 2 8 8 N 1.31515 * 120.00150 * 196.16507 * 7 5 3 9 9 Si 1.86799 * 119.99991 * 16.16170 * 7 5 3 10 10 H 1.48506 * 109.47330 * 87.43199 * 9 7 5 11 11 H 1.48506 * 109.47265 * 207.42872 * 9 7 5 12 12 H 1.48496 * 109.47367 * 327.43107 * 9 7 5 13 13 N 1.46897 * 109.46779 * 63.41070 * 3 2 1 14 14 C 1.46905 * 111.00023 * 261.90579 * 13 3 2 15 15 H 1.08999 * 109.46907 * 26.98288 * 14 13 3 16 16 C 1.53004 * 109.47108 * 266.98600 * 14 13 3 17 17 C 1.52998 * 109.46833 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47386 * 59.99797 * 17 16 14 19 19 H 1.08999 * 109.47274 * 59.99948 * 18 17 16 20 20 C 1.53003 * 109.47182 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.47144 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.46676 * 299.99506 * 20 18 17 23 23 C 1.53004 * 109.47300 * 299.99917 * 18 17 16 24 24 H 1.08992 * 109.47663 * 180.02562 * 23 18 17 25 25 C 1.53004 * 109.47139 * 300.00348 * 23 18 17 26 26 C 1.52994 * 109.47160 * 146.98366 * 14 13 3 27 27 H 1.09004 * 109.47131 * 177.98052 * 1 2 3 28 28 H 1.09000 * 109.47492 * 297.97755 * 1 2 3 29 29 H 1.08998 * 109.47234 * 57.98346 * 1 2 3 30 30 H 1.09000 * 109.47460 * 239.99764 * 2 1 3 31 31 H 1.09004 * 109.47103 * 119.99824 * 2 1 3 32 32 H 0.97002 * 119.99990 * 179.97438 * 8 7 5 33 33 H 1.00895 * 111.00572 * 25.86365 * 13 3 2 34 34 H 1.08999 * 109.46982 * 299.99642 * 16 14 13 35 35 H 1.09000 * 109.47096 * 59.99772 * 16 14 13 36 36 H 1.09003 * 109.47073 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.46956 * 299.99550 * 17 16 14 38 38 H 1.08999 * 109.47278 * 59.99682 * 20 18 17 39 39 H 1.08996 * 109.47148 * 300.00125 * 21 20 18 40 40 H 1.08999 * 109.47121 * 59.99797 * 21 20 18 41 41 H 1.09000 * 109.46896 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.47406 * 60.00371 * 22 20 18 43 43 H 1.09006 * 109.46919 * 180.02562 * 22 20 18 44 44 H 1.08999 * 109.47411 * 300.00094 * 22 20 18 45 45 H 1.08991 * 109.47524 * 179.97438 * 25 23 18 46 46 H 1.09005 * 109.46919 * 300.00249 * 25 23 18 47 47 H 1.09004 * 109.47096 * 59.99182 * 25 23 18 48 48 H 1.09005 * 109.47065 * 299.99897 * 26 14 13 49 49 H 1.08999 * 109.47274 * 60.00147 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6276 1.9736 -0.8578 5 6 3.5446 1.4432 -0.0845 6 1 4.1317 1.8153 0.7421 7 6 4.1717 0.9691 -1.2171 8 7 5.4519 0.6698 -1.1836 9 14 3.2030 0.7517 -2.7994 10 1 3.2106 2.0252 -3.5635 11 1 3.8252 -0.3201 -3.6176 12 1 1.8030 0.3774 -2.4753 13 7 1.6187 2.1107 1.2385 14 6 0.4109 2.9170 1.0171 15 1 -0.1609 2.4953 0.1905 16 6 0.8120 4.3543 0.6788 17 6 -0.4460 5.1941 0.4489 18 6 -1.3019 5.1885 1.7170 19 1 -0.7297 5.6101 2.5434 20 6 -2.5603 6.0279 1.4868 21 6 -3.4165 6.0217 2.7547 22 6 -2.1596 7.4651 1.1483 23 6 -1.7030 3.7512 2.0552 24 1 -2.3132 3.7472 2.9584 25 6 -2.5062 3.1595 0.8952 26 6 -0.4455 2.9115 2.2849 27 1 -0.3633 -1.0271 -0.0362 28 1 -0.3634 0.4821 0.9075 29 1 -0.3633 0.5448 -0.8713 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8930 0.3359 -1.9803 33 1 1.4759 1.4415 1.9799 34 1 1.3838 4.7760 1.5054 35 1 1.4221 4.3582 -0.2244 36 1 -0.1603 6.2180 0.2074 37 1 -1.0182 4.7726 -0.3776 38 1 -3.1323 5.6059 0.6604 39 1 -3.7018 4.9977 2.9955 40 1 -2.8447 6.4434 3.5813 41 1 -4.3127 6.6200 2.5908 42 1 -1.5498 7.4692 0.2448 43 1 -3.0561 8.0633 0.9847 44 1 -1.5876 7.8871 1.9746 45 1 -2.7916 2.1355 1.1359 46 1 -3.4024 3.7579 0.7312 47 1 -1.8964 3.1636 -0.0083 48 1 -0.7313 1.8875 2.5258 49 1 0.1263 3.3332 3.1115 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547288394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:09 Heat of formation + Delta-G solvation = -53.602167 kcal Electronic energy + Delta-G solvation = -22415.549941 eV Core-core repulsion = 19568.188086 eV Total energy + Delta-G solvation = -2847.361855 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.95296 -38.32681 -35.68045 -34.17148 -33.00483 -32.04993 -29.96039 -27.95580 -27.88300 -27.41739 -24.40788 -23.28431 -22.71688 -21.61429 -20.76507 -19.35797 -18.71988 -16.98811 -16.85446 -16.21765 -15.71700 -15.45023 -15.18561 -14.80906 -14.71440 -14.54139 -14.31123 -13.99663 -13.65882 -13.55537 -13.42288 -13.22383 -12.96093 -12.89523 -12.66302 -12.43339 -12.35213 -12.22656 -12.09058 -12.06032 -11.89041 -11.82278 -11.65626 -11.41706 -11.31127 -11.21134 -10.98282 -10.74047 -10.55360 -10.45191 -8.86152 -8.26771 -6.21658 1.31444 1.35068 1.43470 2.35777 3.06422 3.48062 3.77580 3.85513 3.93805 4.20191 4.24786 4.31434 4.37740 4.45052 4.47921 4.51393 4.53601 4.56365 4.59612 4.71393 4.77228 4.81561 4.85007 4.90546 4.97235 4.99484 5.08591 5.10455 5.12701 5.14444 5.17266 5.21289 5.27179 5.28279 5.33162 5.40990 5.43374 5.47293 5.53228 5.54795 5.57716 5.66938 5.76194 5.80319 6.16177 6.81173 6.83587 6.91811 7.41290 8.91029 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.005039 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.310306 B = 5554.798896 C = 5843.452977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 C 0.204 3.796 4 H 0.016 0.984 5 C -0.504 4.504 6 H 0.030 0.970 7 C 0.015 3.985 8 N -0.946 5.946 9 Si 0.923 3.077 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.229 1.229 13 N -0.685 5.685 14 C 0.089 3.911 15 H 0.045 0.955 16 C -0.105 4.105 17 C -0.109 4.109 18 C -0.070 4.070 19 H 0.063 0.937 20 C -0.089 4.089 21 C -0.146 4.146 22 C -0.150 4.150 23 C -0.077 4.077 24 H 0.085 0.915 25 C -0.151 4.151 26 C -0.112 4.112 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.263 0.737 33 H 0.333 0.667 34 H 0.051 0.949 35 H 0.030 0.970 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.047 0.953 48 H 0.064 0.936 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.924 8.414 5.381 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.189 4.189 3 C 0.094 3.906 4 H 0.034 0.966 5 C -0.542 4.542 6 H 0.048 0.952 7 C -0.182 4.182 8 N -0.587 5.587 9 Si 0.747 3.253 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.152 1.152 13 N -0.315 5.315 14 C -0.021 4.021 15 H 0.063 0.937 16 C -0.143 4.143 17 C -0.147 4.147 18 C -0.088 4.088 19 H 0.081 0.919 20 C -0.108 4.108 21 C -0.204 4.204 22 C -0.207 4.207 23 C -0.096 4.096 24 H 0.104 0.896 25 C -0.208 4.208 26 C -0.150 4.150 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.350 8.878 5.208 23.702 hybrid contribution 0.262 -0.916 -0.995 1.378 sum -21.088 7.962 4.213 22.931 Atomic orbital electron populations 1.21860 0.94988 1.01787 1.01527 1.22474 0.95869 0.99680 1.00912 1.19311 0.92924 0.89550 0.88825 0.96575 1.21316 0.91839 1.39578 1.01504 0.95192 1.25715 0.95619 0.94679 1.02176 1.70129 1.12782 1.45886 1.29911 0.86246 0.81410 0.77797 0.79819 1.20504 1.21374 1.15213 1.60453 1.34250 1.28699 1.08134 1.21659 0.89244 0.93660 0.97524 0.93708 1.21495 0.97353 0.95420 1.00037 1.21639 0.95305 0.99357 0.98382 1.21143 0.95710 0.94939 0.97010 0.91882 1.21152 0.95571 0.95302 0.98746 1.21872 0.99406 1.02085 0.96994 1.21905 1.01361 0.96080 1.01373 1.21082 0.95226 0.93967 0.99301 0.89635 1.21985 0.99963 1.00682 0.98199 1.21773 0.96224 1.00313 0.96724 0.91924 0.91799 0.93599 0.93820 0.92980 0.92816 0.84912 0.93036 0.95159 0.91575 0.91988 0.90882 0.92054 0.92959 0.92298 0.92896 0.92168 0.93001 0.92760 0.91308 0.93410 0.91757 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 8.64 71.98 0.62 -3.94 16 2 C -0.15 -6.20 4.63 30.59 0.14 -6.06 16 3 C 0.20 9.47 1.69 44.17 0.07 9.55 16 4 H 0.02 0.79 6.14 -2.39 -0.01 0.77 16 5 C -0.50 -29.54 9.26 25.60 0.24 -29.31 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 7 C 0.02 0.89 5.33 84.65 0.45 1.35 16 8 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 9 Si 0.92 44.55 25.86 68.60 1.77 46.32 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 12 H -0.23 -9.96 5.54 99.48 0.55 -9.41 16 13 N -0.69 -27.55 5.90 -473.31 -2.79 -30.34 16 14 C 0.09 2.83 1.04 44.91 0.05 2.87 16 15 H 0.05 1.46 4.31 -2.39 -0.01 1.45 16 16 C -0.10 -3.41 5.53 30.60 0.17 -3.24 16 17 C -0.11 -2.65 4.57 30.59 0.14 -2.51 16 18 C -0.07 -1.38 1.55 -10.79 -0.02 -1.40 16 19 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 20 C -0.09 -1.43 2.15 -10.79 -0.02 -1.46 16 21 C -0.15 -2.01 8.84 71.98 0.64 -1.37 16 22 C -0.15 -2.36 8.84 71.98 0.64 -1.73 16 23 C -0.08 -1.51 2.37 -10.81 -0.03 -1.53 16 24 H 0.09 1.44 6.43 -2.39 -0.02 1.43 16 25 C -0.15 -2.86 8.15 71.98 0.59 -2.27 16 26 C -0.11 -2.79 4.56 30.57 0.14 -2.65 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.81 5.76 -2.39 -0.01 1.80 16 29 H 0.04 1.44 7.90 -2.39 -0.02 1.42 16 30 H 0.04 1.93 5.02 -2.39 -0.01 1.92 16 31 H 0.05 2.17 8.06 -2.39 -0.02 2.15 16 32 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.33 12.49 7.57 -89.70 -0.68 11.81 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.53 6.43 -2.39 -0.02 1.51 16 37 H 0.06 1.49 6.43 -2.39 -0.02 1.48 16 38 H 0.07 1.17 6.43 -2.39 -0.02 1.15 16 39 H 0.06 0.80 6.43 -2.39 -0.02 0.79 16 40 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.05 0.89 6.43 -2.39 -0.02 0.88 16 43 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 1.09 6.43 -2.38 -0.02 1.08 16 47 H 0.05 1.06 4.81 -2.39 -0.01 1.05 16 48 H 0.06 1.50 7.36 -2.38 -0.02 1.49 16 49 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.55 342.35 3.17 -62.38 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.07 Total: 25.52 kcal Atomic # 6 Polarization: -47.51 SS G_CDS: 3.82 Total: -43.70 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -2.49 Total: -90.52 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.77 Total: 46.32 kcal Total: -65.55 3.17 -62.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547288394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.777 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds