Wall clock time and date at job start Mon Mar 30 2020 07:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47254 * 2 1 4 4 C 1.53001 * 109.47094 * 120.00232 * 2 1 3 5 5 H 1.09002 * 110.05330 * 305.51656 * 4 2 1 6 6 C 1.54370 * 110.04858 * 184.04424 * 4 2 1 7 7 C 1.54898 * 104.19621 * 217.08948 * 6 4 2 8 8 C 1.54888 * 102.74720 * 37.96857 * 7 6 4 9 9 C 1.53881 * 110.03184 * 66.93211 * 4 2 1 10 10 H 1.09002 * 110.02759 * 238.62095 * 9 4 2 11 11 N 1.46897 * 110.03265 * 0.02562 * 9 4 2 12 12 C 1.46895 * 110.99776 * 204.30932 * 11 9 4 13 13 C 1.52999 * 109.47222 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46918 * 59.99957 * 13 12 11 15 15 C 1.53001 * 109.47261 * 300.00475 * 13 12 11 16 16 C 1.53000 * 109.47576 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.47311 * 180.02562 * 16 13 12 18 18 H 1.08004 * 119.99885 * 0.02562 * 17 16 13 19 19 C 1.37871 * 119.99767 * 179.97438 * 17 16 13 20 20 N 1.31510 * 120.00472 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99789 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46994 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.46861 * 299.99656 * 21 19 17 24 24 H 1.48492 * 109.47152 * 59.99854 * 21 19 17 25 25 H 1.08996 * 109.46982 * 306.58024 * 1 2 3 26 26 H 1.09003 * 109.46578 * 66.58012 * 1 2 3 27 27 H 1.08996 * 109.46796 * 186.57836 * 1 2 3 28 28 H 1.09001 * 109.47087 * 239.99985 * 2 1 3 29 29 H 1.08992 * 109.47447 * 300.00094 * 3 2 1 30 30 H 1.09001 * 109.47085 * 59.99984 * 3 2 1 31 31 H 1.09003 * 109.47539 * 179.97438 * 3 2 1 32 32 H 1.08994 * 110.46418 * 98.42120 * 6 4 2 33 33 H 1.09003 * 110.62183 * 335.83343 * 6 4 2 34 34 H 1.08994 * 110.75282 * 279.65271 * 7 6 4 35 35 H 1.08999 * 110.75119 * 156.28295 * 7 6 4 36 36 H 1.08999 * 110.48550 * 203.37927 * 8 7 6 37 37 H 1.09005 * 110.59902 * 80.79164 * 8 7 6 38 38 H 1.00898 * 110.99732 * 80.35441 * 11 9 4 39 39 H 1.09003 * 109.47299 * 60.00254 * 12 11 9 40 40 H 1.08994 * 109.47593 * 299.99854 * 12 11 9 41 41 H 1.08997 * 109.47345 * 180.02562 * 14 13 12 42 42 H 1.09000 * 109.47124 * 300.00030 * 14 13 12 43 43 H 1.09006 * 109.47005 * 60.00198 * 14 13 12 44 44 H 1.09003 * 109.46916 * 299.99374 * 15 13 12 45 45 H 1.09000 * 109.47450 * 59.99561 * 15 13 12 46 46 H 1.09006 * 109.47170 * 180.02562 * 15 13 12 47 47 H 1.09003 * 109.47072 * 60.00337 * 16 13 12 48 48 H 1.09006 * 109.47130 * 300.00281 * 16 13 12 49 49 H 0.97006 * 119.99629 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6038 -0.2749 2.1428 6 6 3.5803 -0.6411 1.3149 7 6 4.0084 -2.0169 1.8834 8 6 3.0149 -2.9917 1.2039 9 6 1.6817 -2.2161 1.1780 10 1 1.0708 -2.4949 2.0367 11 7 0.9582 -2.5013 -0.0682 12 6 0.1237 -3.7022 0.0706 13 6 -0.6129 -3.9662 -1.2442 14 6 0.4058 -4.1798 -2.3656 15 6 -1.4991 -2.7656 -1.5822 16 6 -1.4816 -5.2174 -1.0999 17 6 -2.2067 -5.4777 -2.3951 18 1 -2.0621 -4.8170 -3.2372 19 6 -3.0538 -6.5598 -2.5054 20 7 -3.2296 -7.3646 -1.4803 21 14 -3.9521 -6.8829 -4.1112 22 1 -4.7953 -8.0972 -3.9710 23 1 -4.8130 -5.7183 -4.4396 24 1 -2.9627 -7.0895 -5.1990 25 1 -0.3633 0.6124 0.8252 26 1 -0.3632 0.4085 -0.9431 27 1 -0.3633 -1.0209 0.1177 28 1 1.8934 -0.5138 -0.8900 29 1 1.6768 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 3.8919 0.1615 1.9832 33 1 3.9997 -0.4923 0.3198 34 1 3.8923 -2.0401 2.9669 35 1 5.0343 -2.2501 1.5987 36 1 2.9140 -3.9044 1.7911 37 1 3.3399 -3.2255 0.1900 38 1 1.5966 -2.5922 -0.8442 39 1 -0.6023 -3.5499 0.8692 40 1 0.7550 -4.5575 0.3117 41 1 -0.1189 -4.3674 -3.3023 42 1 1.0250 -3.2886 -2.4685 43 1 1.0372 -5.0351 -2.1248 44 1 -2.2249 -2.6135 -0.7833 45 1 -0.8799 -1.8745 -1.6852 46 1 -2.0243 -2.9539 -2.5186 47 1 -2.2074 -5.0657 -0.3009 48 1 -0.8499 -6.0726 -0.8593 49 1 -2.7628 -7.1971 -0.6466 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554074082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:37 Heat of formation + Delta-G solvation = -39.430118 kcal Electronic energy + Delta-G solvation = -22173.610664 eV Core-core repulsion = 19326.863355 eV Total energy + Delta-G solvation = -2846.747309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.64596 -37.13154 -34.33435 -33.49432 -31.96748 -27.85101 -27.61173 -26.81052 -26.47487 -26.03513 -24.57829 -22.34864 -21.41267 -20.77329 -18.74358 -18.19779 -16.38122 -16.12443 -15.63045 -14.76233 -14.31908 -14.15678 -13.77803 -13.65549 -13.60018 -13.09264 -12.95596 -12.70741 -12.37800 -12.02663 -11.86745 -11.69662 -11.47013 -11.23630 -11.19060 -11.06802 -10.96996 -10.90676 -10.81669 -10.76098 -10.53331 -10.34302 -10.24687 -10.10064 -10.07897 -9.91350 -9.72763 -9.22049 -8.36558 -8.25554 -7.88771 -6.27152 -3.94683 3.47100 3.48923 3.67206 4.36448 4.53377 4.59842 4.63199 4.86039 5.12282 5.26362 5.28786 5.40517 5.48105 5.50139 5.53188 5.57470 5.64859 5.72143 5.75825 5.79472 5.84382 5.89182 5.92972 5.96098 6.03052 6.10225 6.18489 6.22287 6.24061 6.29809 6.33982 6.44832 6.46784 6.60135 6.66749 6.74701 6.78711 7.03429 7.14538 7.18189 7.23927 7.41049 7.45875 7.60748 7.71796 8.32733 8.55464 8.97646 9.75875 11.12749 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030389 B = 0.004317 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.164495 B = 6484.381979 C = 6984.426008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.064 4.064 3 C -0.152 4.152 4 C -0.077 4.077 5 H 0.067 0.933 6 C -0.120 4.120 7 C -0.123 4.123 8 C -0.153 4.153 9 C 0.085 3.915 10 H 0.075 0.925 11 N -0.669 5.669 12 C 0.066 3.934 13 C -0.050 4.050 14 C -0.127 4.127 15 C -0.119 4.119 16 C 0.021 3.979 17 C -0.586 4.586 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.918 5.918 21 Si 1.065 2.935 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.289 1.289 25 H 0.029 0.971 26 H 0.038 0.962 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.338 0.662 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.004 0.996 48 H 0.002 0.998 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.228 14.134 5.268 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.083 4.083 3 C -0.209 4.209 4 C -0.097 4.097 5 H 0.085 0.915 6 C -0.157 4.157 7 C -0.161 4.161 8 C -0.192 4.192 9 C -0.026 4.026 10 H 0.093 0.907 11 N -0.300 5.300 12 C -0.063 4.063 13 C -0.051 4.051 14 C -0.185 4.185 15 C -0.176 4.176 16 C -0.017 4.017 17 C -0.625 4.625 18 H 0.070 0.930 19 C -0.191 4.191 20 N -0.555 5.555 21 Si 0.893 3.107 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.216 1.216 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.159 0.841 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.023 0.977 48 H 0.020 0.980 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.623 13.531 4.652 18.435 hybrid contribution 1.805 0.273 0.842 2.010 sum 13.428 13.805 5.494 20.027 Atomic orbital electron populations 1.22184 0.94584 1.04985 0.99349 1.20789 0.96700 0.93592 0.97239 1.21968 1.00383 0.97452 1.01100 1.21867 0.94330 0.94800 0.98655 0.91464 1.22480 0.95845 0.96674 1.00736 1.22421 0.98510 0.95353 0.99798 1.23115 0.96648 0.98571 1.00850 1.22225 0.92591 0.94232 0.93525 0.90667 1.60954 1.26128 1.38265 1.04634 1.22157 0.95428 0.89541 0.99153 1.20464 0.95071 0.97482 0.92045 1.21752 0.97990 0.98520 1.00192 1.21683 0.98365 0.96453 1.01105 1.19243 0.93768 0.91208 0.97444 1.22022 1.28549 1.13483 0.98413 0.92960 1.25765 0.96502 0.93279 1.03585 1.70778 1.42687 1.38485 1.03523 0.83603 0.76243 0.76186 0.74622 1.20958 1.21538 1.21601 0.95159 0.94244 0.87673 0.91342 0.93239 0.93384 0.93267 0.92156 0.91617 0.91754 0.92034 0.91994 0.91628 0.84098 0.91819 0.96052 0.91704 0.94719 0.94336 0.94370 0.93167 0.92745 0.97732 0.98015 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.27 37.16 0.31 -1.64 16 2 C -0.06 -0.71 1.91 -90.62 -0.17 -0.89 16 3 C -0.15 -1.49 8.89 37.15 0.33 -1.16 16 4 C -0.08 -0.82 2.51 -89.44 -0.22 -1.04 16 5 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 6 C -0.12 -1.11 5.20 -25.01 -0.13 -1.24 16 7 C -0.12 -1.14 6.91 -24.73 -0.17 -1.31 16 8 C -0.15 -1.66 6.42 -25.07 -0.16 -1.82 16 9 C 0.08 1.00 2.96 -66.59 -0.20 0.80 16 10 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 11 N -0.67 -8.92 1.55 -105.55 -0.16 -9.08 16 12 C 0.07 1.09 4.41 -3.83 -0.02 1.08 16 13 C -0.05 -0.98 0.60 -154.51 -0.09 -1.07 16 14 C -0.13 -2.36 7.89 37.16 0.29 -2.06 16 15 C -0.12 -2.27 7.59 37.16 0.28 -1.99 16 16 C 0.02 0.52 3.35 -27.88 -0.09 0.43 16 17 C -0.59 -16.19 7.65 -34.44 -0.26 -16.45 16 18 H 0.05 1.42 5.68 -52.48 -0.30 1.12 16 19 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 20 N -0.92 -28.26 13.65 55.43 0.76 -27.51 16 21 Si 1.06 25.46 29.90 -169.99 -5.08 20.38 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 1.50 4.15 -51.93 -0.22 1.29 16 28 H 0.07 0.82 7.09 -51.93 -0.37 0.45 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.44 6.83 -51.93 -0.35 0.09 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.61 7.39 -51.93 -0.38 0.23 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.74 7.57 -51.93 -0.39 0.35 16 38 H 0.34 4.51 5.54 -39.29 -0.22 4.29 16 39 H 0.06 1.10 8.07 -51.93 -0.42 0.69 16 40 H 0.02 0.37 8.12 -51.93 -0.42 -0.06 16 41 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 42 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.84 6.18 -51.93 -0.32 0.52 16 46 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 47 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 48 H 0.00 0.04 8.01 -51.93 -0.42 -0.37 16 49 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -28.51 353.48 -8.97 -37.48 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -9.40 Total: 1.53 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: -0.41 Total: -28.12 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.59 Total: -36.59 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.51 -8.97 -37.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554074082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.955 kcal (2) G-P(sol) polarization free energy of solvation -28.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds