Wall clock time and date at job start Mon Mar 30 2020 07:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47415 * 2 1 4 4 C 1.53007 * 109.47308 * 119.99740 * 2 1 3 5 5 H 1.08995 * 110.01487 * 301.39769 * 4 2 1 6 6 C 1.54266 * 110.02878 * 62.83424 * 4 2 1 7 7 C 1.55238 * 104.23333 * 142.89793 * 6 4 2 8 8 C 1.54894 * 102.58338 * 322.08174 * 7 6 4 9 9 C 1.53869 * 110.03216 * 179.97438 * 4 2 1 10 10 H 1.08995 * 110.03881 * 0.02562 * 9 4 2 11 11 N 1.46898 * 110.06868 * 121.41276 * 9 4 2 12 12 C 1.46913 * 110.99884 * 203.64314 * 11 9 4 13 13 C 1.53001 * 109.46742 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47353 * 299.99778 * 13 12 11 15 15 C 1.52997 * 109.47447 * 60.00212 * 13 12 11 16 16 C 1.53005 * 109.46635 * 180.02562 * 13 12 11 17 17 C 1.50699 * 109.46990 * 179.97438 * 16 13 12 18 18 H 1.08000 * 120.00304 * 359.97438 * 17 16 13 19 19 C 1.37880 * 120.00034 * 179.97438 * 17 16 13 20 20 N 1.31507 * 120.00051 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99772 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46787 * 89.99975 * 21 19 17 23 23 H 1.48495 * 109.47106 * 209.99505 * 21 19 17 24 24 H 1.48496 * 109.47330 * 329.99853 * 21 19 17 25 25 H 1.08996 * 109.47071 * 300.00141 * 1 2 3 26 26 H 1.09002 * 109.47084 * 59.99643 * 1 2 3 27 27 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47547 * 239.99658 * 2 1 3 29 29 H 1.08994 * 109.47580 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47286 * 300.00233 * 3 2 1 31 31 H 1.09008 * 109.46990 * 59.99484 * 3 2 1 32 32 H 1.09005 * 110.48526 * 261.57665 * 6 4 2 33 33 H 1.09007 * 110.48724 * 24.08149 * 6 4 2 34 34 H 1.08996 * 110.89448 * 203.79739 * 7 6 4 35 35 H 1.08993 * 110.76342 * 80.31404 * 7 6 4 36 36 H 1.09002 * 110.48891 * 279.18596 * 8 7 6 37 37 H 1.08998 * 110.48494 * 156.67683 * 8 7 6 38 38 H 1.00902 * 111.00475 * 79.69055 * 11 9 4 39 39 H 1.08993 * 109.47006 * 299.99844 * 12 11 9 40 40 H 1.08996 * 109.46669 * 59.99889 * 12 11 9 41 41 H 1.09003 * 109.47066 * 60.00208 * 14 13 12 42 42 H 1.08993 * 109.47264 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.47429 * 300.00554 * 14 13 12 44 44 H 1.09005 * 109.47004 * 59.99680 * 15 13 12 45 45 H 1.08997 * 109.47376 * 179.97438 * 15 13 12 46 46 H 1.08996 * 109.47143 * 299.99799 * 15 13 12 47 47 H 1.09005 * 109.47146 * 299.99909 * 16 13 12 48 48 H 1.08992 * 109.47392 * 59.99700 * 16 13 12 49 49 H 0.97008 * 119.99850 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6614 -0.2289 2.1450 6 6 1.5923 -2.1973 1.2271 7 6 2.7957 -2.9703 1.8305 8 6 4.0122 -2.2092 1.2476 9 6 3.5786 -0.7293 1.2620 10 1 3.9621 -0.2191 0.3785 11 7 4.0762 -0.0714 2.4776 12 6 5.4413 0.4347 2.2811 13 6 5.9237 1.1121 3.5654 14 6 4.9925 2.2766 3.9086 15 6 5.9157 0.0980 4.7110 16 6 7.3452 1.6398 3.3606 17 6 7.8202 2.3076 4.6253 18 1 7.1728 2.3517 5.4886 19 6 9.0813 2.8623 4.6802 20 7 9.4956 3.4455 5.7837 21 14 10.2007 2.7867 3.1867 22 1 9.9799 3.9875 2.3413 23 1 11.6171 2.7480 3.6311 24 1 9.8951 1.5647 2.4003 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 0.7032 -2.3356 1.8424 33 1 1.4016 -2.5228 0.2044 34 1 2.7955 -4.0090 1.5002 35 1 2.7873 -2.9098 2.9187 36 1 4.2148 -2.5372 0.2280 37 1 4.8907 -2.3557 1.8760 38 1 4.0321 -0.6946 3.2699 39 1 6.1046 -0.3948 2.0362 40 1 5.4469 1.1574 1.4653 41 1 3.9796 1.9011 4.0543 42 1 5.3364 2.7594 4.8232 43 1 4.9982 2.9991 3.0924 44 1 6.5792 -0.7316 4.4665 45 1 6.2598 0.5805 5.6258 46 1 4.9029 -0.2775 4.8567 47 1 8.0089 0.8104 3.1158 48 1 7.3505 2.3623 2.5446 49 1 10.3827 3.8361 5.8222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554074086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:39 Heat of formation + Delta-G solvation = -43.979769 kcal Electronic energy + Delta-G solvation = -21834.986049 eV Core-core repulsion = 18988.041453 eV Total energy + Delta-G solvation = -2846.944597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.53240 -37.21870 -34.68072 -33.08159 -31.88047 -28.24529 -27.87162 -27.33692 -26.51976 -26.31676 -24.69436 -22.04343 -21.28985 -20.34752 -19.47568 -17.77225 -16.76595 -15.86492 -15.77365 -14.46254 -14.42976 -14.39783 -14.00363 -13.72146 -13.55316 -13.18437 -12.94761 -12.66463 -12.44291 -12.28484 -12.20265 -11.93784 -11.57687 -11.43877 -11.21844 -11.03640 -11.02085 -10.91094 -10.80671 -10.77422 -10.55074 -10.47312 -10.41981 -10.33896 -10.28125 -9.75178 -9.65554 -9.22278 -8.86374 -8.47594 -8.02399 -5.97922 -3.93765 3.33607 3.41131 3.44706 4.33466 4.49688 4.50193 4.57385 4.85714 4.98732 5.06772 5.14530 5.35329 5.41923 5.50538 5.51929 5.56843 5.60167 5.64055 5.67632 5.73785 5.76026 5.79608 5.84511 5.87041 5.91863 5.99012 6.02847 6.07597 6.19923 6.20738 6.28207 6.31168 6.40358 6.46519 6.49404 6.63726 6.74871 6.83643 7.11978 7.18353 7.24594 7.36973 7.43439 7.50797 7.74052 7.88341 8.62420 9.08304 9.65464 11.15256 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.004213 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.361562 B = 6643.968149 C = 6889.949978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.077 4.077 5 H 0.084 0.916 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.157 4.157 9 C 0.086 3.914 10 H 0.078 0.922 11 N -0.676 5.676 12 C 0.068 3.932 13 C -0.048 4.048 14 C -0.117 4.117 15 C -0.130 4.130 16 C -0.004 4.004 17 C -0.506 4.506 18 H 0.078 0.922 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.875 3.125 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.267 1.267 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.339 0.661 39 H 0.021 0.979 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.035 0.965 47 H 0.011 0.989 48 H 0.009 0.991 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 -10.813 -11.283 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.096 4.096 5 H 0.102 0.898 6 C -0.157 4.157 7 C -0.161 4.161 8 C -0.196 4.196 9 C -0.025 4.025 10 H 0.096 0.904 11 N -0.307 5.307 12 C -0.061 4.061 13 C -0.049 4.049 14 C -0.174 4.174 15 C -0.187 4.187 16 C -0.042 4.042 17 C -0.544 4.544 18 H 0.096 0.904 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.703 3.297 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.192 1.192 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.158 0.842 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.054 0.946 47 H 0.030 0.970 48 H 0.028 0.972 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.575 -10.100 -11.346 22.482 hybrid contribution 1.390 -0.808 -0.799 1.796 sum -15.185 -10.908 -12.145 22.295 Atomic orbital electron populations 1.21846 0.95593 1.01370 1.01521 1.21143 0.95294 0.96474 0.97534 1.21841 1.01560 0.95542 1.01269 1.21875 0.94414 0.94754 0.98575 0.89755 1.22507 0.97592 0.95119 1.00480 1.22513 0.94877 0.98448 1.00225 1.23097 0.98106 0.97354 1.01052 1.22272 0.94475 0.91671 0.94087 0.90424 1.60688 1.23760 1.41361 1.04852 1.22133 0.87329 0.97528 0.99077 1.20407 0.96949 0.95067 0.92444 1.21602 0.97501 0.96956 1.01332 1.21769 0.98605 0.98233 1.00094 1.19626 0.91415 0.95611 0.97554 1.21148 1.00004 1.34960 0.98280 0.90442 1.25014 0.97944 0.95059 0.95569 1.69911 1.19186 1.38725 1.26767 0.86854 0.80049 0.78904 0.83889 1.20449 1.21601 1.19216 0.92685 0.93146 0.92886 0.91880 0.92248 0.93577 0.92352 0.92010 0.91902 0.92061 0.91567 0.91820 0.91729 0.84151 0.96089 0.91835 0.93646 0.92274 0.94311 0.94263 0.91260 0.94583 0.97041 0.97235 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.99 37.16 0.33 -0.89 16 2 C -0.09 -0.82 2.21 -90.62 -0.20 -1.01 16 3 C -0.14 -1.53 8.93 37.16 0.33 -1.20 16 4 C -0.08 -0.78 2.30 -89.50 -0.21 -0.99 16 5 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 6 C -0.12 -1.07 5.33 -24.88 -0.13 -1.20 16 7 C -0.12 -1.16 6.94 -24.55 -0.17 -1.33 16 8 C -0.16 -1.68 6.19 -25.10 -0.16 -1.83 16 9 C 0.09 0.99 2.33 -66.63 -0.16 0.83 16 10 H 0.08 0.96 6.02 -51.93 -0.31 0.65 16 11 N -0.68 -9.17 5.32 -105.57 -0.56 -9.74 16 12 C 0.07 1.11 4.43 -3.82 -0.02 1.09 16 13 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 14 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 15 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 16 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 17 C -0.51 -14.04 8.20 -34.44 -0.28 -14.32 16 18 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 19 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 20 N -0.91 -27.93 13.96 55.43 0.77 -27.15 16 21 Si 0.88 21.93 27.47 -169.99 -4.67 17.27 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.27 -6.47 6.54 56.52 0.37 -6.11 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.41 7.27 -51.93 -0.38 0.03 16 28 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.06 0.70 6.48 -51.93 -0.34 0.36 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.53 7.74 -51.93 -0.40 0.13 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.76 7.65 -51.93 -0.40 0.37 16 38 H 0.34 4.56 6.51 -39.29 -0.26 4.31 16 39 H 0.02 0.35 7.78 -51.93 -0.40 -0.06 16 40 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 41 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 42 H 0.06 1.27 6.61 -51.93 -0.34 0.93 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.45 6.62 -51.93 -0.34 1.10 16 46 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 47 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 48 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 359.87 15.07 5.42 5.42 Total: -1.00 -28.66 359.87 -9.00 -37.67 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -9.63 Total: 0.86 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -0.34 Total: -24.33 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.21 Total: -36.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.66 -9.00 -37.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554074086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.312 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds