Wall clock time and date at job start Mon Mar 30 2020 07:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47415 * 2 1 4 4 C 1.53007 * 109.47308 * 119.99740 * 2 1 3 5 5 H 1.08995 * 110.01487 * 301.39769 * 4 2 1 6 6 C 1.54266 * 110.02878 * 62.83424 * 4 2 1 7 7 C 1.55238 * 104.23333 * 142.89793 * 6 4 2 8 8 C 1.54894 * 102.58338 * 322.08174 * 7 6 4 9 9 C 1.53869 * 110.03216 * 179.97438 * 4 2 1 10 10 H 1.08995 * 110.03881 * 0.02562 * 9 4 2 11 11 N 1.46898 * 110.06868 * 121.41276 * 9 4 2 12 12 C 1.46913 * 110.99884 * 203.64314 * 11 9 4 13 13 C 1.53001 * 109.46742 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47353 * 299.99778 * 13 12 11 15 15 C 1.52997 * 109.47447 * 60.00212 * 13 12 11 16 16 C 1.53005 * 109.46635 * 180.02562 * 13 12 11 17 17 C 1.50699 * 109.46990 * 179.97438 * 16 13 12 18 18 H 1.08000 * 120.00304 * 359.97438 * 17 16 13 19 19 C 1.37880 * 120.00034 * 179.97438 * 17 16 13 20 20 N 1.31507 * 120.00051 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99772 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46787 * 89.99975 * 21 19 17 23 23 H 1.48495 * 109.47106 * 209.99505 * 21 19 17 24 24 H 1.48496 * 109.47330 * 329.99853 * 21 19 17 25 25 H 1.08996 * 109.47071 * 300.00141 * 1 2 3 26 26 H 1.09002 * 109.47084 * 59.99643 * 1 2 3 27 27 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47547 * 239.99658 * 2 1 3 29 29 H 1.08994 * 109.47580 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47286 * 300.00233 * 3 2 1 31 31 H 1.09008 * 109.46990 * 59.99484 * 3 2 1 32 32 H 1.09005 * 110.48526 * 261.57665 * 6 4 2 33 33 H 1.09007 * 110.48724 * 24.08149 * 6 4 2 34 34 H 1.08996 * 110.89448 * 203.79739 * 7 6 4 35 35 H 1.08993 * 110.76342 * 80.31404 * 7 6 4 36 36 H 1.09002 * 110.48891 * 279.18596 * 8 7 6 37 37 H 1.08998 * 110.48494 * 156.67683 * 8 7 6 38 38 H 1.00902 * 111.00475 * 79.69055 * 11 9 4 39 39 H 1.08993 * 109.47006 * 299.99844 * 12 11 9 40 40 H 1.08996 * 109.46669 * 59.99889 * 12 11 9 41 41 H 1.09003 * 109.47066 * 60.00208 * 14 13 12 42 42 H 1.08993 * 109.47264 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.47429 * 300.00554 * 14 13 12 44 44 H 1.09005 * 109.47004 * 59.99680 * 15 13 12 45 45 H 1.08997 * 109.47376 * 179.97438 * 15 13 12 46 46 H 1.08996 * 109.47143 * 299.99799 * 15 13 12 47 47 H 1.09005 * 109.47146 * 299.99909 * 16 13 12 48 48 H 1.08992 * 109.47392 * 59.99700 * 16 13 12 49 49 H 0.97008 * 119.99850 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6614 -0.2289 2.1450 6 6 1.5923 -2.1973 1.2271 7 6 2.7957 -2.9703 1.8305 8 6 4.0122 -2.2092 1.2476 9 6 3.5786 -0.7293 1.2620 10 1 3.9621 -0.2191 0.3785 11 7 4.0762 -0.0714 2.4776 12 6 5.4413 0.4347 2.2811 13 6 5.9237 1.1121 3.5654 14 6 4.9925 2.2766 3.9086 15 6 5.9157 0.0980 4.7110 16 6 7.3452 1.6398 3.3606 17 6 7.8202 2.3076 4.6253 18 1 7.1728 2.3517 5.4886 19 6 9.0813 2.8623 4.6802 20 7 9.4956 3.4455 5.7837 21 14 10.2007 2.7867 3.1867 22 1 9.9799 3.9875 2.3413 23 1 11.6171 2.7480 3.6311 24 1 9.8951 1.5647 2.4003 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 0.7032 -2.3356 1.8424 33 1 1.4016 -2.5228 0.2044 34 1 2.7955 -4.0090 1.5002 35 1 2.7873 -2.9098 2.9187 36 1 4.2148 -2.5372 0.2280 37 1 4.8907 -2.3557 1.8760 38 1 4.0321 -0.6946 3.2699 39 1 6.1046 -0.3948 2.0362 40 1 5.4469 1.1574 1.4653 41 1 3.9796 1.9011 4.0543 42 1 5.3364 2.7594 4.8232 43 1 4.9982 2.9991 3.0924 44 1 6.5792 -0.7316 4.4665 45 1 6.2598 0.5805 5.6258 46 1 4.9029 -0.2775 4.8567 47 1 8.0089 0.8104 3.1158 48 1 7.3505 2.3623 2.5446 49 1 10.3827 3.8361 5.8222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554074086.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:38 Heat of formation + Delta-G solvation = -58.859430 kcal Electronic energy + Delta-G solvation = -21835.631280 eV Core-core repulsion = 18988.041453 eV Total energy + Delta-G solvation = -2847.589827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.46136 -38.66301 -35.64618 -34.66919 -33.49454 -29.82127 -28.81246 -28.43018 -27.91906 -27.42771 -26.09083 -23.82845 -22.08307 -21.20633 -20.37633 -19.31701 -18.86708 -16.87315 -16.76469 -16.22085 -15.61865 -15.44678 -15.17739 -15.04069 -14.75650 -14.49881 -14.21569 -14.05211 -13.80698 -13.53474 -13.19103 -12.97475 -12.84861 -12.80066 -12.60625 -12.41064 -12.23940 -12.18220 -12.10138 -11.87187 -11.79327 -11.72495 -11.56255 -11.42278 -11.30263 -11.22538 -11.11137 -10.93348 -10.72674 -10.70294 -9.13382 -8.22026 -6.22123 1.35028 1.36305 1.47461 2.38948 3.12990 3.30278 3.69743 3.78471 4.00969 4.13169 4.20922 4.24824 4.31266 4.33560 4.39377 4.61989 4.69236 4.73687 4.79583 4.81610 4.82824 4.87428 4.92155 4.93780 4.96614 5.04394 5.06005 5.08318 5.10934 5.13063 5.19008 5.23501 5.27907 5.33848 5.37239 5.44470 5.45786 5.49285 5.54013 5.59264 5.63190 5.70801 5.77037 5.82930 6.29363 6.43493 6.63379 6.85139 7.40331 8.94260 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.004213 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.361562 B = 6643.968149 C = 6889.949978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.072 4.072 5 H 0.071 0.929 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.155 4.155 9 C 0.085 3.915 10 H 0.071 0.929 11 N -0.674 5.674 12 C 0.083 3.917 13 C -0.048 4.048 14 C -0.107 4.107 15 C -0.122 4.122 16 C -0.002 4.002 17 C -0.503 4.503 18 H 0.044 0.956 19 C 0.002 3.998 20 N -0.954 5.954 21 Si 0.940 3.060 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.251 1.251 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.341 0.659 39 H 0.022 0.978 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.036 0.964 44 H 0.042 0.958 45 H 0.035 0.965 46 H 0.065 0.935 47 H 0.011 0.989 48 H 0.009 0.991 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.745 -12.522 -13.565 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.091 4.091 5 H 0.090 0.910 6 C -0.151 4.151 7 C -0.158 4.158 8 C -0.194 4.194 9 C -0.025 4.025 10 H 0.089 0.911 11 N -0.306 5.306 12 C -0.046 4.046 13 C -0.048 4.048 14 C -0.164 4.164 15 C -0.180 4.180 16 C -0.040 4.040 17 C -0.541 4.541 18 H 0.062 0.938 19 C -0.194 4.194 20 N -0.596 5.596 21 Si 0.765 3.235 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.174 1.174 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.161 0.839 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.029 0.971 48 H 0.028 0.972 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.908 -11.824 -13.640 25.427 hybrid contribution 1.729 -0.262 -0.030 1.749 sum -16.179 -12.086 -13.670 24.386 Atomic orbital electron populations 1.21814 0.94538 1.02063 1.01602 1.21123 0.96122 0.95548 0.97343 1.21817 1.00589 0.96471 1.01147 1.21806 0.93160 0.95805 0.98354 0.91026 1.22476 0.97630 0.93779 1.01202 1.22509 0.94282 0.98992 1.00020 1.23055 0.98242 0.96732 1.01369 1.22325 0.95416 0.92077 0.92686 0.91094 1.60646 1.21866 1.42091 1.05973 1.21833 0.88784 0.97269 0.96759 1.20343 0.94508 0.95429 0.94524 1.21489 0.98541 0.96808 0.99560 1.21673 1.00394 0.97766 0.98134 1.19591 0.94069 0.95181 0.95188 1.21431 0.99436 1.34331 0.98934 0.93760 1.25909 0.99870 0.95017 0.98607 1.70063 1.19852 1.40484 1.29231 0.85809 0.77774 0.79724 0.80223 1.19627 1.21361 1.17432 0.93158 0.92562 0.91882 0.91356 0.93647 0.92742 0.93445 0.91210 0.90959 0.90915 0.91880 0.91134 0.92857 0.83898 0.95963 0.92108 0.91510 0.95487 0.94520 0.93890 0.94590 0.91597 0.97063 0.97227 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.99 71.98 0.65 -1.39 16 2 C -0.08 -1.38 2.21 -10.79 -0.02 -1.41 16 3 C -0.14 -2.81 8.93 71.98 0.64 -2.17 16 4 C -0.07 -1.30 2.30 -10.07 -0.02 -1.32 16 5 H 0.07 1.51 7.92 -2.39 -0.02 1.49 16 6 C -0.11 -1.67 5.33 31.79 0.17 -1.50 16 7 C -0.12 -1.92 6.94 32.01 0.22 -1.70 16 8 C -0.15 -2.93 6.19 31.65 0.20 -2.74 16 9 C 0.09 1.79 2.33 45.62 0.11 1.90 16 10 H 0.07 1.62 6.02 -2.39 -0.01 1.60 16 11 N -0.67 -17.06 5.32 -487.93 -2.60 -19.65 16 12 C 0.08 2.56 4.43 86.30 0.38 2.94 16 13 C -0.05 -1.81 0.60 -52.18 -0.03 -1.84 16 14 C -0.11 -4.10 8.06 71.98 0.58 -3.52 16 15 C -0.12 -4.46 7.89 71.98 0.57 -3.89 16 16 C 0.00 -0.11 3.11 29.85 0.09 -0.02 16 17 C -0.50 -28.64 8.20 25.60 0.21 -28.43 16 18 H 0.04 2.76 5.92 -2.91 -0.02 2.74 16 19 C 0.00 0.10 5.47 84.66 0.46 0.56 16 20 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 21 Si 0.94 45.26 27.47 68.60 1.88 47.14 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.78 7.27 -2.39 -0.02 0.76 16 28 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 29 H 0.04 1.01 6.48 -2.39 -0.02 0.99 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.07 0.96 7.74 -2.38 -0.02 0.94 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.14 7.65 -2.39 -0.02 1.12 16 38 H 0.34 8.42 6.51 -89.69 -0.58 7.83 16 39 H 0.02 0.69 7.78 -2.39 -0.02 0.67 16 40 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 41 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 42 H 0.03 1.18 6.61 -2.39 -0.02 1.16 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.03 1.53 6.62 -2.39 -0.02 1.52 16 46 H 0.07 1.98 6.57 -2.39 -0.02 1.96 16 47 H 0.01 0.52 7.20 -2.38 -0.02 0.51 16 48 H 0.01 0.44 7.57 -2.39 -0.02 0.43 16 49 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -62.56 359.87 4.03 -58.54 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.24 Total: 18.74 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 4.20 Total: -44.52 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -2.30 Total: -79.90 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Total: -62.56 4.03 -58.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554074086.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.323 kcal (2) G-P(sol) polarization free energy of solvation -62.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds