Wall clock time and date at job start Mon Mar 30 2020 07:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47060 * 2 1 4 4 C 1.52995 * 109.47164 * 119.99557 * 2 1 3 5 5 H 1.09003 * 110.05561 * 187.48208 * 4 2 1 6 6 C 1.54268 * 110.03502 * 308.89907 * 4 2 1 7 7 C 1.54893 * 104.19735 * 142.89285 * 6 4 2 8 8 C 1.54895 * 102.74589 * 322.06185 * 7 6 4 9 9 C 1.53875 * 110.03025 * 66.06960 * 4 2 1 10 10 H 1.09001 * 110.07242 * 121.40872 * 9 4 2 11 11 N 1.46896 * 110.03119 * 359.97438 * 9 4 2 12 12 C 1.46902 * 110.99633 * 171.57504 * 11 9 4 13 13 C 1.53005 * 109.46907 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46845 * 299.99669 * 13 12 11 15 15 C 1.52994 * 109.47259 * 59.99892 * 13 12 11 16 16 C 1.53005 * 109.46861 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.46997 * 179.97438 * 16 13 12 18 18 H 1.08009 * 119.99912 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00049 * 180.02562 * 17 16 13 20 20 N 1.31505 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99853 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46981 * 90.00092 * 21 19 17 23 23 H 1.48498 * 109.46805 * 209.99930 * 21 19 17 24 24 H 1.48500 * 109.47069 * 329.99782 * 21 19 17 25 25 H 1.09005 * 109.47258 * 308.90918 * 1 2 3 26 26 H 1.08997 * 109.47173 * 68.90352 * 1 2 3 27 27 H 1.08998 * 109.46992 * 188.90293 * 1 2 3 28 28 H 1.09000 * 109.47238 * 240.00199 * 2 1 3 29 29 H 1.08994 * 109.47513 * 174.94354 * 3 2 1 30 30 H 1.09001 * 109.46721 * 294.93570 * 3 2 1 31 31 H 1.08991 * 109.47533 * 54.93784 * 3 2 1 32 32 H 1.09006 * 110.48269 * 24.21617 * 6 4 2 33 33 H 1.08994 * 110.59997 * 261.63176 * 6 4 2 34 34 H 1.08990 * 110.75713 * 203.74752 * 7 6 4 35 35 H 1.09000 * 110.91372 * 80.44553 * 7 6 4 36 36 H 1.08998 * 110.48510 * 279.26069 * 8 7 6 37 37 H 1.08996 * 110.48340 * 156.62164 * 8 7 6 38 38 H 1.00894 * 110.99756 * 47.62266 * 11 9 4 39 39 H 1.09003 * 109.47142 * 299.99902 * 12 11 9 40 40 H 1.08999 * 109.47857 * 60.00232 * 12 11 9 41 41 H 1.08999 * 109.47243 * 60.00091 * 14 13 12 42 42 H 1.09005 * 109.47276 * 180.02562 * 14 13 12 43 43 H 1.09002 * 109.47331 * 300.00040 * 14 13 12 44 44 H 1.09003 * 109.47360 * 60.00147 * 15 13 12 45 45 H 1.09005 * 109.46970 * 180.02562 * 15 13 12 46 46 H 1.09005 * 109.47294 * 299.99789 * 15 13 12 47 47 H 1.08989 * 109.47366 * 299.99698 * 16 13 12 48 48 H 1.09002 * 109.47157 * 60.00057 * 16 13 12 49 49 H 0.96995 * 120.00351 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1217 -0.6127 1.3281 6 6 1.3581 -0.1450 2.5074 7 6 1.1434 -1.3773 3.4211 8 6 0.7648 -2.4894 2.4116 9 6 1.6628 -2.2117 1.1883 10 1 2.5611 -2.8272 1.2371 11 7 0.9260 -2.4940 -0.0507 12 6 0.7292 -3.9389 -0.2286 13 6 -0.0395 -4.1929 -1.5269 14 6 -1.4006 -3.4975 -1.4581 15 6 0.7578 -3.6375 -2.7087 16 6 -0.2438 -5.6978 -1.7125 17 6 -1.0015 -5.9480 -2.9909 18 1 -1.3064 -5.1167 -3.6095 19 6 -1.3055 -7.2380 -3.3709 20 7 -0.9347 -8.2501 -2.6176 21 14 -2.2440 -7.5481 -4.9561 22 1 -1.2832 -7.7089 -6.0768 23 1 -3.0544 -8.7847 -4.8176 24 1 -3.1405 -6.3973 -5.2337 25 1 -0.3634 0.6455 0.7997 26 1 -0.3633 0.3699 -0.9588 27 1 -0.3633 -1.0153 0.1590 28 1 1.8934 -0.5138 -0.8900 29 1 3.1262 1.4440 0.0906 30 1 1.7526 1.9295 -0.9319 31 1 1.6046 1.9819 0.8411 32 1 0.4016 0.3093 2.2487 33 1 2.0059 0.5833 2.9952 34 1 0.3293 -1.2000 4.1237 35 1 2.0607 -1.6330 3.9514 36 1 -0.2874 -2.4136 2.1374 37 1 0.9815 -3.4728 2.8285 38 1 1.3936 -2.0918 -0.8491 39 1 1.6989 -4.4342 -0.2780 40 1 0.1615 -4.3347 0.6135 41 1 -1.2546 -2.4254 -1.3261 42 1 -1.9484 -3.6788 -2.3828 43 1 -1.9686 -3.8932 -0.6161 44 1 1.7275 -4.1329 -2.7577 45 1 0.2100 -3.8180 -3.6336 46 1 0.9038 -2.5653 -2.5767 47 1 0.7259 -6.1928 -1.7616 48 1 -0.8117 -6.0939 -0.8706 49 1 -1.1482 -9.1577 -2.8851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554074089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:43 Heat of formation + Delta-G solvation = -28.475248 kcal Electronic energy + Delta-G solvation = -22182.001661 eV Core-core repulsion = 19335.729391 eV Total energy + Delta-G solvation = -2846.272270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.77453 -37.02406 -34.15827 -33.30707 -31.90642 -27.78768 -27.48941 -27.04804 -26.58507 -26.28095 -24.59503 -22.34255 -22.04409 -20.10981 -18.28620 -17.76681 -16.22843 -16.14613 -15.53481 -14.92390 -14.80003 -14.47697 -13.87518 -13.65107 -13.33919 -13.01548 -12.81987 -12.45792 -12.22433 -11.97765 -11.78574 -11.68098 -11.41984 -11.22980 -11.11400 -11.01186 -10.92606 -10.82735 -10.76527 -10.57846 -10.50066 -10.38389 -10.25649 -10.19286 -10.10087 -10.00193 -9.62238 -8.96967 -8.78171 -8.29333 -7.85755 -5.93816 -3.93761 3.34654 3.41318 3.44282 4.44130 4.53590 4.59049 4.61908 4.89437 5.15298 5.20865 5.27122 5.42072 5.50598 5.58940 5.61050 5.63912 5.70052 5.75445 5.79753 5.81158 5.92502 5.98511 6.02052 6.02731 6.03384 6.12956 6.17535 6.28169 6.33140 6.37992 6.41349 6.46567 6.51472 6.56452 6.68392 6.83770 6.86409 6.97758 7.25277 7.31015 7.31585 7.51911 7.72829 7.78023 7.89901 8.06886 8.51533 9.11823 9.68978 11.17891 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.004276 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.581605 B = 6547.113949 C = 7006.358779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.084 4.084 5 H 0.063 0.937 6 C -0.120 4.120 7 C -0.125 4.125 8 C -0.114 4.114 9 C 0.084 3.916 10 H 0.035 0.965 11 N -0.672 5.672 12 C 0.065 3.935 13 C -0.057 4.057 14 C -0.116 4.116 15 C -0.129 4.129 16 C 0.034 3.966 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.886 3.114 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.340 0.660 39 H 0.020 0.980 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.032 0.968 47 H 0.011 0.989 48 H 0.014 0.986 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 16.727 9.062 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.098 4.098 3 C -0.205 4.205 4 C -0.103 4.103 5 H 0.082 0.918 6 C -0.157 4.157 7 C -0.162 4.162 8 C -0.152 4.152 9 C -0.026 4.026 10 H 0.053 0.947 11 N -0.307 5.307 12 C -0.064 4.064 13 C -0.057 4.057 14 C -0.173 4.173 15 C -0.186 4.186 16 C -0.004 4.004 17 C -0.544 4.544 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.128 0.872 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.163 0.837 39 H 0.038 0.962 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.070 16.628 9.342 19.734 hybrid contribution 0.550 -0.702 -1.128 1.438 sum 5.620 15.926 8.213 18.780 Atomic orbital electron populations 1.22342 0.94185 1.05644 0.99788 1.20958 0.97300 0.94519 0.97017 1.21901 1.00277 0.96993 1.01368 1.21897 0.98856 0.94115 0.95402 0.91824 1.22514 1.01133 0.97140 0.94940 1.22448 1.00739 0.95677 0.97383 1.22423 1.00874 0.97728 0.94156 1.22125 0.94441 0.94664 0.91373 0.94745 1.61095 1.51829 1.13512 1.04236 1.22161 0.98249 0.86743 0.99216 1.20603 0.94410 0.99110 0.91608 1.21615 0.96320 0.98348 1.01062 1.21769 0.99519 0.97500 0.99807 1.19115 0.96585 0.87832 0.96822 1.21248 1.34849 0.91780 1.06525 0.92326 1.25009 0.96250 0.96485 0.96830 1.69962 1.47344 0.98653 1.37843 0.86680 0.80043 0.77666 0.84134 1.20861 1.21394 1.19912 0.94060 0.94139 0.87161 0.91637 0.93431 0.93064 0.92942 0.90414 0.92571 0.91882 0.92148 0.90242 0.92367 0.83705 0.96168 0.91578 0.93721 0.92844 0.94266 0.94226 0.91814 0.94874 0.97043 0.96746 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.10 37.16 0.30 -1.56 16 2 C -0.08 -0.83 2.21 -90.62 -0.20 -1.03 16 3 C -0.15 -1.38 8.98 37.16 0.33 -1.04 16 4 C -0.08 -0.88 2.71 -89.50 -0.24 -1.13 16 5 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.12 -1.16 5.48 -25.07 -0.14 -1.30 16 7 C -0.12 -1.23 6.91 -24.73 -0.17 -1.40 16 8 C -0.11 -1.35 5.64 -25.07 -0.14 -1.49 16 9 C 0.08 1.03 2.95 -66.60 -0.20 0.83 16 10 H 0.03 0.45 8.09 -51.93 -0.42 0.03 16 11 N -0.67 -9.23 2.29 -105.54 -0.24 -9.47 16 12 C 0.06 1.10 4.46 -3.82 -0.02 1.09 16 13 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 14 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 15 C -0.13 -2.38 7.89 37.15 0.29 -2.09 16 16 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 17 C -0.51 -13.86 7.65 -34.44 -0.26 -14.12 16 18 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.04 0.44 6.20 -51.93 -0.32 0.12 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.11 1.45 4.83 -51.93 -0.25 1.20 16 28 H 0.07 0.74 6.28 -51.93 -0.33 0.42 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.47 7.68 -51.93 -0.40 0.07 16 32 H 0.08 0.78 5.38 -51.93 -0.28 0.50 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.34 4.63 4.22 -39.29 -0.17 4.46 16 39 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 40 H 0.07 1.17 7.50 -51.93 -0.39 0.78 16 41 H 0.04 0.75 6.98 -51.93 -0.36 0.39 16 42 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 46 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 47 H 0.01 0.31 8.14 -51.94 -0.42 -0.11 16 48 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -28.02 352.44 -8.95 -36.97 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -9.29 Total: 0.95 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -0.45 Total: -24.16 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.49 Total: -35.73 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.02 -8.95 -36.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554074089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.499 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds