Wall clock time and date at job start Mon Mar 30 2020 07:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47060 * 2 1 4 4 C 1.52995 * 109.47164 * 119.99557 * 2 1 3 5 5 H 1.09003 * 110.05561 * 187.48208 * 4 2 1 6 6 C 1.54268 * 110.03502 * 308.89907 * 4 2 1 7 7 C 1.54893 * 104.19735 * 142.89285 * 6 4 2 8 8 C 1.54895 * 102.74589 * 322.06185 * 7 6 4 9 9 C 1.53875 * 110.03025 * 66.06960 * 4 2 1 10 10 H 1.09001 * 110.07242 * 121.40872 * 9 4 2 11 11 N 1.46896 * 110.03119 * 359.97438 * 9 4 2 12 12 C 1.46902 * 110.99633 * 171.57504 * 11 9 4 13 13 C 1.53005 * 109.46907 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46845 * 299.99669 * 13 12 11 15 15 C 1.52994 * 109.47259 * 59.99892 * 13 12 11 16 16 C 1.53005 * 109.46861 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.46997 * 179.97438 * 16 13 12 18 18 H 1.08009 * 119.99912 * 0.02562 * 17 16 13 19 19 C 1.37875 * 120.00049 * 180.02562 * 17 16 13 20 20 N 1.31505 * 120.00205 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99853 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46981 * 90.00092 * 21 19 17 23 23 H 1.48498 * 109.46805 * 209.99930 * 21 19 17 24 24 H 1.48500 * 109.47069 * 329.99782 * 21 19 17 25 25 H 1.09005 * 109.47258 * 308.90918 * 1 2 3 26 26 H 1.08997 * 109.47173 * 68.90352 * 1 2 3 27 27 H 1.08998 * 109.46992 * 188.90293 * 1 2 3 28 28 H 1.09000 * 109.47238 * 240.00199 * 2 1 3 29 29 H 1.08994 * 109.47513 * 174.94354 * 3 2 1 30 30 H 1.09001 * 109.46721 * 294.93570 * 3 2 1 31 31 H 1.08991 * 109.47533 * 54.93784 * 3 2 1 32 32 H 1.09006 * 110.48269 * 24.21617 * 6 4 2 33 33 H 1.08994 * 110.59997 * 261.63176 * 6 4 2 34 34 H 1.08990 * 110.75713 * 203.74752 * 7 6 4 35 35 H 1.09000 * 110.91372 * 80.44553 * 7 6 4 36 36 H 1.08998 * 110.48510 * 279.26069 * 8 7 6 37 37 H 1.08996 * 110.48340 * 156.62164 * 8 7 6 38 38 H 1.00894 * 110.99756 * 47.62266 * 11 9 4 39 39 H 1.09003 * 109.47142 * 299.99902 * 12 11 9 40 40 H 1.08999 * 109.47857 * 60.00232 * 12 11 9 41 41 H 1.08999 * 109.47243 * 60.00091 * 14 13 12 42 42 H 1.09005 * 109.47276 * 180.02562 * 14 13 12 43 43 H 1.09002 * 109.47331 * 300.00040 * 14 13 12 44 44 H 1.09003 * 109.47360 * 60.00147 * 15 13 12 45 45 H 1.09005 * 109.46970 * 180.02562 * 15 13 12 46 46 H 1.09005 * 109.47294 * 299.99789 * 15 13 12 47 47 H 1.08989 * 109.47366 * 299.99698 * 16 13 12 48 48 H 1.09002 * 109.47157 * 60.00057 * 16 13 12 49 49 H 0.96995 * 120.00351 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 3.1217 -0.6127 1.3281 6 6 1.3581 -0.1450 2.5074 7 6 1.1434 -1.3773 3.4211 8 6 0.7648 -2.4894 2.4116 9 6 1.6628 -2.2117 1.1883 10 1 2.5611 -2.8272 1.2371 11 7 0.9260 -2.4940 -0.0507 12 6 0.7292 -3.9389 -0.2286 13 6 -0.0395 -4.1929 -1.5269 14 6 -1.4006 -3.4975 -1.4581 15 6 0.7578 -3.6375 -2.7087 16 6 -0.2438 -5.6978 -1.7125 17 6 -1.0015 -5.9480 -2.9909 18 1 -1.3064 -5.1167 -3.6095 19 6 -1.3055 -7.2380 -3.3709 20 7 -0.9347 -8.2501 -2.6176 21 14 -2.2440 -7.5481 -4.9561 22 1 -1.2832 -7.7089 -6.0768 23 1 -3.0544 -8.7847 -4.8176 24 1 -3.1405 -6.3973 -5.2337 25 1 -0.3634 0.6455 0.7997 26 1 -0.3633 0.3699 -0.9588 27 1 -0.3633 -1.0153 0.1590 28 1 1.8934 -0.5138 -0.8900 29 1 3.1262 1.4440 0.0906 30 1 1.7526 1.9295 -0.9319 31 1 1.6046 1.9819 0.8411 32 1 0.4016 0.3093 2.2487 33 1 2.0059 0.5833 2.9952 34 1 0.3293 -1.2000 4.1237 35 1 2.0607 -1.6330 3.9514 36 1 -0.2874 -2.4136 2.1374 37 1 0.9815 -3.4728 2.8285 38 1 1.3936 -2.0918 -0.8491 39 1 1.6989 -4.4342 -0.2780 40 1 0.1615 -4.3347 0.6135 41 1 -1.2546 -2.4254 -1.3261 42 1 -1.9484 -3.6788 -2.3828 43 1 -1.9686 -3.8932 -0.6161 44 1 1.7275 -4.1329 -2.7577 45 1 0.2100 -3.8180 -3.6336 46 1 0.9038 -2.5653 -2.5767 47 1 0.7259 -6.1928 -1.7616 48 1 -0.8117 -6.0939 -0.8706 49 1 -1.1482 -9.1577 -2.8851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554074089.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:43 Heat of formation + Delta-G solvation = -40.974927 kcal Electronic energy + Delta-G solvation = -22182.543687 eV Core-core repulsion = 19335.729391 eV Total energy + Delta-G solvation = -2846.814297 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76612 -38.55756 -35.18942 -34.81224 -33.61505 -29.23391 -28.61039 -28.10271 -27.88568 -27.76599 -26.13164 -24.12440 -22.89767 -21.06349 -19.51457 -19.08667 -18.32499 -17.14447 -16.65159 -16.49422 -15.97680 -15.71854 -15.18176 -14.94556 -14.74357 -14.39327 -14.01736 -13.88079 -13.65139 -13.20265 -13.15593 -12.79851 -12.72746 -12.63237 -12.49840 -12.30851 -12.27210 -12.21848 -12.04515 -11.94788 -11.81893 -11.73066 -11.48853 -11.37820 -11.25772 -11.07468 -10.95517 -10.81257 -10.65789 -10.50076 -9.03969 -8.13443 -6.20480 1.40795 1.41401 1.52128 2.44030 3.20514 3.33293 3.71088 3.76083 4.01382 4.19115 4.26104 4.32149 4.39314 4.40949 4.45820 4.61036 4.71529 4.78109 4.80840 4.81226 4.87440 4.89257 4.98044 5.01001 5.08496 5.11740 5.13610 5.19878 5.23246 5.24150 5.25422 5.28562 5.34395 5.45410 5.51908 5.53150 5.55245 5.60863 5.61114 5.67346 5.69472 5.88754 5.94200 6.02615 6.24963 6.40036 6.62299 6.94943 7.46955 8.99011 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.004276 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.581605 B = 6547.113949 C = 7006.358779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.078 4.078 3 C -0.144 4.144 4 C -0.079 4.079 5 H 0.071 0.929 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.115 4.115 9 C 0.082 3.918 10 H 0.027 0.973 11 N -0.660 5.660 12 C 0.079 3.921 13 C -0.052 4.052 14 C -0.105 4.105 15 C -0.121 4.121 16 C 0.040 3.960 17 C -0.513 4.513 18 H 0.066 0.934 19 C -0.004 4.004 20 N -0.939 5.939 21 Si 0.955 3.045 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.262 1.262 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.344 0.656 39 H 0.009 0.991 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.028 0.972 44 H 0.033 0.967 45 H 0.046 0.954 46 H 0.067 0.933 47 H -0.019 1.019 48 H -0.018 1.018 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 19.225 8.872 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.097 4.097 3 C -0.201 4.201 4 C -0.097 4.097 5 H 0.090 0.910 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.028 4.028 10 H 0.045 0.955 11 N -0.295 5.295 12 C -0.050 4.050 13 C -0.053 4.053 14 C -0.163 4.163 15 C -0.179 4.179 16 C 0.003 3.997 17 C -0.551 4.551 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.781 3.219 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.187 1.187 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.167 0.833 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.085 0.915 47 H -0.001 1.001 48 H 0.001 0.999 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.273 19.151 9.150 21.870 hybrid contribution 0.508 -1.484 -1.014 1.868 sum 5.780 17.667 8.136 20.291 Atomic orbital electron populations 1.22270 0.94821 1.04584 0.99959 1.20930 0.96651 0.95470 0.96611 1.21853 1.00694 0.95850 1.01742 1.21874 0.99428 0.92412 0.96026 0.91021 1.22489 1.01264 0.97147 0.94333 1.22427 1.01365 0.94839 0.97052 1.22404 0.99981 0.98243 0.94718 1.22218 0.93943 0.96155 0.90516 0.95545 1.61093 1.52450 1.10760 1.05172 1.21842 0.96998 0.88931 0.97236 1.20459 0.95779 0.95306 0.93739 1.21507 0.95244 0.99829 0.99689 1.21679 0.98552 0.99520 0.98119 1.19001 0.94078 0.91577 0.95058 1.21626 1.34352 0.92050 1.07072 0.91586 1.25916 0.97375 0.96400 1.00393 1.70108 1.48908 0.99088 1.39928 0.85584 0.78777 0.77714 0.79831 1.20090 1.21283 1.18652 0.93307 0.94357 0.88932 0.92317 0.92774 0.92921 0.92349 0.90574 0.90996 0.91061 0.91409 0.91530 0.93302 0.83283 0.97313 0.92680 0.90968 0.94532 0.95249 0.94765 0.93474 0.91467 1.00111 0.99935 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.10 71.98 0.58 -2.69 16 2 C -0.08 -1.44 2.21 -10.79 -0.02 -1.46 16 3 C -0.14 -2.24 8.98 71.98 0.65 -1.59 16 4 C -0.08 -1.46 2.71 -10.07 -0.03 -1.49 16 5 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 6 C -0.12 -1.90 5.48 31.67 0.17 -1.72 16 7 C -0.12 -2.11 6.91 31.89 0.22 -1.89 16 8 C -0.12 -2.65 5.64 31.67 0.18 -2.47 16 9 C 0.08 1.90 2.95 45.64 0.13 2.04 16 10 H 0.03 0.67 8.09 -2.39 -0.02 0.65 16 11 N -0.66 -17.48 2.29 -487.82 -1.12 -18.59 16 12 C 0.08 2.73 4.46 86.30 0.39 3.11 16 13 C -0.05 -2.09 0.60 -52.18 -0.03 -2.12 16 14 C -0.11 -3.98 8.06 71.98 0.58 -3.40 16 15 C -0.12 -4.40 7.89 71.98 0.57 -3.84 16 16 C 0.04 2.13 4.04 29.85 0.12 2.25 16 17 C -0.51 -28.65 7.65 25.60 0.20 -28.45 16 18 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 19 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 20 N -0.94 -58.05 13.29 21.44 0.28 -57.76 16 21 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 25 H 0.05 0.92 6.20 -2.38 -0.01 0.91 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 2.26 4.83 -2.39 -0.01 2.25 16 28 H 0.06 1.18 6.28 -2.39 -0.01 1.16 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.84 7.68 -2.39 -0.02 0.83 16 32 H 0.08 1.31 5.38 -2.38 -0.01 1.29 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.71 8.05 -2.39 -0.02 1.69 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.34 8.73 4.22 -89.70 -0.38 8.35 16 39 H 0.01 0.32 8.13 -2.39 -0.02 0.30 16 40 H 0.05 2.02 7.50 -2.39 -0.02 2.00 16 41 H 0.07 2.31 6.98 -2.39 -0.02 2.29 16 42 H 0.04 1.48 6.62 -2.38 -0.02 1.47 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.05 1.86 6.62 -2.38 -0.02 1.84 16 46 H 0.07 1.97 6.57 -2.38 -0.02 1.95 16 47 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 48 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 49 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -61.35 352.44 5.87 -55.48 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.51 Total: 17.55 kcal Atomic # 6 Polarization: -47.67 SS G_CDS: 4.17 Total: -43.50 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -0.83 Total: -76.35 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -61.35 5.87 -55.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554074089.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.507 kcal (2) G-P(sol) polarization free energy of solvation -61.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds