Wall clock time and date at job start Mon Mar 30 2020 07:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46927 * 2 1 4 4 N 1.46894 * 109.47156 * 120.00181 * 2 1 3 5 5 C 1.46896 * 111.00096 * 73.13723 * 4 2 1 6 6 C 1.50701 * 109.47195 * 66.04431 * 5 4 2 7 7 H 1.08003 * 119.99581 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00174 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00236 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99921 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46961 * 59.99938 * 10 8 6 12 12 H 1.48496 * 109.46953 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46865 * 300.00304 * 10 8 6 14 14 C 1.46902 * 111.00195 * 309.18506 * 4 2 1 15 15 C 1.52992 * 109.47433 * 199.87495 * 14 4 2 16 16 C 1.52997 * 109.47374 * 174.79766 * 15 14 4 17 17 C 1.53001 * 109.47474 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47075 * 64.99589 * 17 16 15 19 19 C 1.53001 * 109.47075 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.47511 * 300.00307 * 19 18 17 21 21 C 1.53001 * 109.46932 * 59.99548 * 20 19 18 22 22 C 1.52993 * 109.47694 * 300.00226 * 21 20 19 23 23 H 1.08999 * 109.47403 * 300.00342 * 1 2 3 24 24 H 1.09004 * 109.47342 * 59.99378 * 1 2 3 25 25 H 1.08999 * 109.47530 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47020 * 240.00330 * 2 1 3 27 27 H 1.09001 * 109.47258 * 174.42541 * 3 2 1 28 28 H 1.08998 * 109.47175 * 294.42896 * 3 2 1 29 29 H 1.09000 * 109.47174 * 54.42744 * 3 2 1 30 30 H 1.09002 * 109.47369 * 186.04784 * 5 4 2 31 31 H 1.09000 * 109.47222 * 306.04904 * 5 4 2 32 32 H 0.96999 * 120.00269 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47116 * 79.86857 * 14 4 2 34 34 H 1.09003 * 109.47033 * 319.88022 * 14 4 2 35 35 H 1.09003 * 109.47124 * 54.79562 * 15 14 4 36 36 H 1.08998 * 109.47323 * 294.79356 * 15 14 4 37 37 H 1.09003 * 109.47162 * 59.99818 * 16 15 14 38 38 H 1.09006 * 109.47356 * 299.99994 * 16 15 14 39 39 H 1.09003 * 109.46770 * 304.99772 * 17 16 15 40 40 H 1.08997 * 109.47619 * 300.00605 * 18 17 16 41 41 H 1.09003 * 109.47173 * 60.00429 * 18 17 16 42 42 H 1.09004 * 109.47126 * 180.02562 * 19 18 17 43 43 H 1.09003 * 109.46770 * 60.00182 * 19 18 17 44 44 H 1.09002 * 109.47433 * 300.00048 * 20 19 18 45 45 H 1.08996 * 109.47290 * 179.97438 * 20 19 18 46 46 H 1.09003 * 109.47020 * 179.97438 * 21 20 19 47 47 H 1.09002 * 109.46902 * 60.00765 * 21 20 19 48 48 H 1.09002 * 109.47386 * 300.00242 * 22 21 20 49 49 H 1.08995 * 109.47565 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.8201 -2.1436 1.0878 6 6 2.6873 -2.6863 -0.0188 7 1 3.3234 -2.0199 -0.5824 8 6 2.6694 -4.0337 -0.3108 9 7 1.8952 -4.8452 0.3759 10 14 3.7449 -4.7065 -1.6820 11 1 5.1705 -4.4245 -1.3765 12 1 3.5440 -6.1735 -1.7941 13 1 3.3757 -4.0562 -2.9650 14 6 1.3782 -0.1646 2.4109 15 6 2.2256 -0.5217 3.6336 16 6 1.6280 0.1371 4.8784 17 6 2.4757 -0.2195 6.1012 18 6 3.8706 0.3908 5.9502 19 6 4.7181 0.0347 7.1732 20 6 4.0525 0.5893 8.4342 21 6 2.6576 -0.0210 8.5850 22 6 1.8100 0.3352 7.3622 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1254 1.4442 0.0998 28 1 1.7604 1.9267 -0.9356 29 1 1.5974 1.9843 0.8359 30 1 2.0912 -2.6211 2.0294 31 1 0.7736 -2.3502 0.8637 32 1 1.8829 -5.7931 0.1706 33 1 0.3854 -0.6020 2.5164 34 1 1.2912 0.9192 2.3331 35 1 3.2446 -0.1636 3.4867 36 1 2.2361 -1.6037 3.7649 37 1 0.6090 -0.2210 5.0254 38 1 1.6174 1.2192 4.7473 39 1 2.5601 -1.3033 6.1811 40 1 4.3447 -0.0040 5.0516 41 1 3.7863 1.4746 5.8702 42 1 5.7118 0.4699 7.0659 43 1 4.8025 -1.0491 7.2537 44 1 3.9681 1.6731 8.3538 45 1 4.6561 0.3352 9.3054 46 1 2.1835 0.3739 9.4836 47 1 2.7420 -1.1047 8.6655 48 1 1.7256 1.4189 7.2816 49 1 0.8165 -0.1000 7.4694 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565330461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:07 Heat of formation + Delta-G solvation = -47.874464 kcal Electronic energy + Delta-G solvation = -21339.763374 eV Core-core repulsion = 18492.649891 eV Total energy + Delta-G solvation = -2847.113483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.88153 -37.71825 -34.13184 -32.73956 -31.16606 -30.73554 -29.32827 -26.71119 -26.51628 -24.49620 -22.77032 -22.17906 -21.58595 -20.27802 -19.68735 -18.47496 -16.21082 -15.48923 -15.23473 -14.87724 -14.50810 -14.23285 -14.06945 -13.91044 -13.75132 -13.18123 -12.89098 -12.65916 -12.25268 -12.22521 -12.00276 -11.92728 -11.59419 -11.35308 -11.17478 -11.07765 -11.04855 -10.81439 -10.74733 -10.68200 -10.66442 -10.44829 -10.33567 -10.14608 -9.94822 -9.85637 -9.70484 -9.50561 -9.06247 -8.37500 -7.08639 -5.97580 -3.97993 3.35930 3.39909 3.42999 4.46350 4.63663 4.71121 4.77357 4.97267 5.16723 5.23841 5.37589 5.41380 5.45581 5.51861 5.53009 5.56004 5.63475 5.66825 5.78259 5.87078 5.89043 5.98200 5.99090 6.02859 6.07469 6.11418 6.13813 6.17385 6.21172 6.25739 6.32619 6.35959 6.37965 6.40291 6.47396 6.54776 6.60527 6.79202 6.86405 6.92280 6.97455 7.43071 7.50182 7.87790 8.20910 8.34385 8.66276 9.09907 9.65699 11.13206 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.004259 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.617358 B = 6572.093061 C = 7440.781382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 C -0.139 4.139 4 N -0.531 5.531 5 C 0.191 3.809 6 C -0.505 4.505 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.056 3.944 15 C -0.113 4.113 16 C -0.111 4.111 17 C -0.086 4.086 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.114 4.114 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.030 0.970 31 H -0.008 1.008 32 H 0.260 0.740 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 11.968 12.157 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 C -0.197 4.197 4 N -0.254 5.254 5 C 0.066 3.934 6 C -0.544 4.544 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.073 4.073 15 C -0.150 4.150 16 C -0.149 4.149 17 C -0.104 4.104 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.151 4.151 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.762 11.854 12.204 17.031 hybrid contribution -0.419 -0.716 -0.784 1.142 sum 0.343 11.138 11.420 15.956 Atomic orbital electron populations 1.22435 0.98971 1.01961 1.00429 1.21581 0.91572 0.93954 0.95822 1.21847 1.01554 0.96325 0.99930 1.62310 1.56101 1.07184 0.99837 1.19743 0.95154 0.80981 0.97488 1.21156 1.24001 0.92552 1.16655 0.92058 1.24966 0.95836 0.97016 0.96720 1.69947 1.39151 1.04053 1.40784 0.86616 0.81069 0.77629 0.82423 1.20218 1.21432 1.20345 1.22027 0.95266 0.98495 0.91486 1.21588 0.99902 1.00904 0.92644 1.21603 0.98778 1.00182 0.94382 1.21154 0.94840 1.00355 0.94080 1.21628 0.95252 1.00444 0.97945 1.21549 0.98462 1.00986 0.94831 1.21530 0.96171 1.00168 0.97729 1.21533 0.95647 1.00809 0.97732 1.21589 0.98446 1.00712 0.94390 0.93545 0.93490 0.92197 0.89136 0.92291 0.93519 0.93722 0.95167 0.99024 0.92994 0.96007 0.92460 0.91351 0.91861 0.92526 0.92566 0.91217 0.91168 0.92358 0.92344 0.92046 0.92286 0.92548 0.92511 0.92088 0.92275 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.49 37.16 0.32 -2.89 16 2 C 0.08 1.55 2.76 -67.72 -0.19 1.36 16 3 C -0.14 -2.22 9.11 37.16 0.34 -1.88 16 4 N -0.53 -11.37 4.35 -228.09 -0.99 -12.36 16 5 C 0.19 4.98 4.45 -4.98 -0.02 4.95 16 6 C -0.50 -14.21 8.32 -34.44 -0.29 -14.50 16 7 H 0.06 1.71 7.22 -52.48 -0.38 1.33 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.06 1.01 3.51 -3.83 -0.01 1.00 16 15 C -0.11 -1.87 5.00 -26.74 -0.13 -2.00 16 16 C -0.11 -1.47 4.68 -26.73 -0.13 -1.60 16 17 C -0.09 -1.03 2.19 -90.62 -0.20 -1.23 16 18 C -0.12 -1.34 4.96 -26.73 -0.13 -1.47 16 19 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 20 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 21 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 22 C -0.11 -1.18 5.20 -26.73 -0.14 -1.32 16 23 H 0.05 0.77 6.66 -51.93 -0.35 0.42 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.21 6.71 -51.93 -0.35 0.87 16 26 H 0.09 1.98 6.61 -51.93 -0.34 1.64 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.66 6.59 -51.93 -0.34 0.32 16 30 H 0.03 0.84 6.73 -51.93 -0.35 0.50 16 31 H -0.01 -0.22 6.57 -51.93 -0.34 -0.56 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.02 0.41 7.34 -51.93 -0.38 0.03 16 34 H 0.06 0.94 6.02 -51.93 -0.31 0.63 16 35 H 0.07 1.16 6.56 -51.93 -0.34 0.82 16 36 H 0.06 1.19 6.97 -51.93 -0.36 0.83 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.91 6.56 -51.93 -0.34 0.57 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -28.75 361.39 -10.65 -39.40 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -9.66 Total: -1.10 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -1.16 Total: -22.03 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.26 Total: -38.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.75 -10.65 -39.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565330461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.471 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds