Wall clock time and date at job start Mon Mar 30 2020 07:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46927 * 2 1 4 4 N 1.46894 * 109.47156 * 120.00181 * 2 1 3 5 5 C 1.46896 * 111.00096 * 73.13723 * 4 2 1 6 6 C 1.50701 * 109.47195 * 66.04431 * 5 4 2 7 7 H 1.08003 * 119.99581 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00174 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00236 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99921 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46961 * 59.99938 * 10 8 6 12 12 H 1.48496 * 109.46953 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46865 * 300.00304 * 10 8 6 14 14 C 1.46902 * 111.00195 * 309.18506 * 4 2 1 15 15 C 1.52992 * 109.47433 * 199.87495 * 14 4 2 16 16 C 1.52997 * 109.47374 * 174.79766 * 15 14 4 17 17 C 1.53001 * 109.47474 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47075 * 64.99589 * 17 16 15 19 19 C 1.53001 * 109.47075 * 179.97438 * 18 17 16 20 20 C 1.52995 * 109.47511 * 300.00307 * 19 18 17 21 21 C 1.53001 * 109.46932 * 59.99548 * 20 19 18 22 22 C 1.52993 * 109.47694 * 300.00226 * 21 20 19 23 23 H 1.08999 * 109.47403 * 300.00342 * 1 2 3 24 24 H 1.09004 * 109.47342 * 59.99378 * 1 2 3 25 25 H 1.08999 * 109.47530 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47020 * 240.00330 * 2 1 3 27 27 H 1.09001 * 109.47258 * 174.42541 * 3 2 1 28 28 H 1.08998 * 109.47175 * 294.42896 * 3 2 1 29 29 H 1.09000 * 109.47174 * 54.42744 * 3 2 1 30 30 H 1.09002 * 109.47369 * 186.04784 * 5 4 2 31 31 H 1.09000 * 109.47222 * 306.04904 * 5 4 2 32 32 H 0.96999 * 120.00269 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47116 * 79.86857 * 14 4 2 34 34 H 1.09003 * 109.47033 * 319.88022 * 14 4 2 35 35 H 1.09003 * 109.47124 * 54.79562 * 15 14 4 36 36 H 1.08998 * 109.47323 * 294.79356 * 15 14 4 37 37 H 1.09003 * 109.47162 * 59.99818 * 16 15 14 38 38 H 1.09006 * 109.47356 * 299.99994 * 16 15 14 39 39 H 1.09003 * 109.46770 * 304.99772 * 17 16 15 40 40 H 1.08997 * 109.47619 * 300.00605 * 18 17 16 41 41 H 1.09003 * 109.47173 * 60.00429 * 18 17 16 42 42 H 1.09004 * 109.47126 * 180.02562 * 19 18 17 43 43 H 1.09003 * 109.46770 * 60.00182 * 19 18 17 44 44 H 1.09002 * 109.47433 * 300.00048 * 20 19 18 45 45 H 1.08996 * 109.47290 * 179.97438 * 20 19 18 46 46 H 1.09003 * 109.47020 * 179.97438 * 21 20 19 47 47 H 1.09002 * 109.46902 * 60.00765 * 21 20 19 48 48 H 1.09002 * 109.47386 * 300.00242 * 22 21 20 49 49 H 1.08995 * 109.47565 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.8201 -2.1436 1.0878 6 6 2.6873 -2.6863 -0.0188 7 1 3.3234 -2.0199 -0.5824 8 6 2.6694 -4.0337 -0.3108 9 7 1.8952 -4.8452 0.3759 10 14 3.7449 -4.7065 -1.6820 11 1 5.1705 -4.4245 -1.3765 12 1 3.5440 -6.1735 -1.7941 13 1 3.3757 -4.0562 -2.9650 14 6 1.3782 -0.1646 2.4109 15 6 2.2256 -0.5217 3.6336 16 6 1.6280 0.1371 4.8784 17 6 2.4757 -0.2195 6.1012 18 6 3.8706 0.3908 5.9502 19 6 4.7181 0.0347 7.1732 20 6 4.0525 0.5893 8.4342 21 6 2.6576 -0.0210 8.5850 22 6 1.8100 0.3352 7.3622 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1254 1.4442 0.0998 28 1 1.7604 1.9267 -0.9356 29 1 1.5974 1.9843 0.8359 30 1 2.0912 -2.6211 2.0294 31 1 0.7736 -2.3502 0.8637 32 1 1.8829 -5.7931 0.1706 33 1 0.3854 -0.6020 2.5164 34 1 1.2912 0.9192 2.3331 35 1 3.2446 -0.1636 3.4867 36 1 2.2361 -1.6037 3.7649 37 1 0.6090 -0.2210 5.0254 38 1 1.6174 1.2192 4.7473 39 1 2.5601 -1.3033 6.1811 40 1 4.3447 -0.0040 5.0516 41 1 3.7863 1.4746 5.8702 42 1 5.7118 0.4699 7.0659 43 1 4.8025 -1.0491 7.2537 44 1 3.9681 1.6731 8.3538 45 1 4.6561 0.3352 9.3054 46 1 2.1835 0.3739 9.4836 47 1 2.7420 -1.1047 8.6655 48 1 1.7256 1.4189 7.2816 49 1 0.8165 -0.1000 7.4694 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565330461.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:07 Heat of formation + Delta-G solvation = -62.229443 kcal Electronic energy + Delta-G solvation = -21340.385853 eV Core-core repulsion = 18492.649891 eV Total energy + Delta-G solvation = -2847.735962 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.93978 -39.21405 -35.31745 -34.85845 -32.57369 -31.60100 -30.83451 -28.40914 -27.97417 -25.91073 -24.21056 -23.61342 -22.75930 -21.37862 -20.60013 -20.09631 -18.35895 -17.01204 -16.38688 -16.30465 -16.10491 -15.69417 -15.16879 -14.97824 -14.85579 -14.55856 -14.50441 -14.02768 -13.78803 -13.29440 -13.29048 -13.23783 -12.94827 -12.80897 -12.67560 -12.57916 -12.40262 -12.26172 -12.11827 -12.06536 -11.93256 -11.75950 -11.67609 -11.51851 -11.30478 -11.23189 -11.06729 -10.79043 -10.68782 -10.56908 -8.87017 -8.18417 -6.27662 1.39356 1.42673 1.50410 2.40603 3.13614 3.32365 3.79616 3.86332 3.92901 4.08176 4.17106 4.26660 4.34593 4.36536 4.42802 4.54316 4.58008 4.63028 4.67559 4.70771 4.76808 4.79511 4.80543 4.85632 4.87324 4.95765 4.99943 5.06564 5.08405 5.15964 5.19565 5.26444 5.27734 5.29262 5.30840 5.36923 5.43791 5.44772 5.48030 5.50579 5.57529 5.61898 5.68105 5.70484 6.12693 6.48411 6.77192 6.90165 7.41645 8.92348 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.004259 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.617358 B = 6572.093061 C = 7440.781382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 C -0.127 4.127 4 N -0.537 5.537 5 C 0.210 3.790 6 C -0.521 4.521 7 H 0.060 0.940 8 C 0.002 3.998 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.058 3.942 15 C -0.104 4.104 16 C -0.102 4.102 17 C -0.085 4.085 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.110 4.110 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.000 1.000 31 H -0.038 1.038 32 H 0.263 0.737 33 H 0.011 0.989 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.052 0.948 48 H 0.069 0.931 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.710 14.277 12.393 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.037 4.037 3 C -0.185 4.185 4 N -0.261 5.261 5 C 0.084 3.916 6 C -0.559 4.559 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.790 3.210 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.192 1.192 14 C -0.070 4.070 15 C -0.142 4.142 16 C -0.140 4.140 17 C -0.103 4.103 18 C -0.151 4.151 19 C -0.159 4.159 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.147 4.147 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.018 0.982 31 H -0.020 1.020 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.169 14.187 12.443 18.907 hybrid contribution -0.567 -1.421 -0.856 1.753 sum 0.602 12.766 11.587 17.251 Atomic orbital electron populations 1.22329 0.97740 1.00293 1.02511 1.21679 0.92674 0.95699 0.93610 1.21741 1.01123 0.93555 1.02043 1.62268 1.57134 1.04667 1.02043 1.19326 0.92882 0.84053 0.95333 1.21465 1.24202 0.93041 1.17186 0.92183 1.25878 0.97142 0.97307 0.99251 1.70086 1.40687 1.04383 1.42481 0.85503 0.79212 0.76986 0.79334 1.19404 1.20868 1.19221 1.22121 0.94601 0.99765 0.90504 1.21501 0.99846 0.98968 0.93919 1.21527 0.98596 1.00798 0.93041 1.21117 0.95264 0.99322 0.94611 1.21594 0.94934 1.00827 0.97734 1.21552 0.98826 1.00495 0.95012 1.21518 0.95956 1.00514 0.97289 1.21543 0.95826 1.00471 0.97890 1.21554 0.98399 1.01189 0.93601 0.91868 0.90910 0.95710 0.92206 0.92871 0.91072 0.91955 0.98189 1.02025 0.92844 0.97120 0.89577 0.91743 0.95376 0.92540 0.90666 0.93258 0.93210 0.91301 0.91590 0.93119 0.91439 0.91466 0.90940 0.92898 0.91184 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.98 8.49 71.98 0.61 -5.37 16 2 C 0.07 2.78 2.76 44.92 0.12 2.91 16 3 C -0.13 -3.73 9.11 71.98 0.66 -3.08 16 4 N -0.54 -23.56 4.35 -875.55 -3.81 -27.37 16 5 C 0.21 11.54 4.45 85.56 0.38 11.92 16 6 C -0.52 -30.30 8.32 25.60 0.21 -30.09 16 7 H 0.06 3.43 7.22 -2.91 -0.02 3.41 16 8 C 0.00 0.11 5.46 84.66 0.46 0.57 16 9 N -0.94 -57.78 13.29 21.45 0.28 -57.49 16 10 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 C 0.06 2.10 3.51 86.30 0.30 2.41 16 15 C -0.10 -3.56 5.00 30.59 0.15 -3.40 16 16 C -0.10 -2.62 4.68 30.59 0.14 -2.47 16 17 C -0.08 -2.00 2.19 -10.79 -0.02 -2.02 16 18 C -0.11 -2.55 4.96 30.59 0.15 -2.40 16 19 C -0.12 -2.40 5.92 30.59 0.18 -2.22 16 20 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 21 C -0.12 -2.05 5.92 30.59 0.18 -1.87 16 22 C -0.11 -2.09 5.20 30.59 0.16 -1.93 16 23 H 0.06 1.98 6.66 -2.39 -0.02 1.97 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 25 H 0.02 1.02 6.71 -2.39 -0.02 1.00 16 26 H 0.06 2.66 6.61 -2.39 -0.02 2.65 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.61 6.59 -2.39 -0.02 1.60 16 30 H 0.00 0.00 6.73 -2.39 -0.02 -0.01 16 31 H -0.04 -2.26 6.57 -2.39 -0.02 -2.28 16 32 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.01 0.41 7.34 -2.39 -0.02 0.39 16 34 H 0.09 2.63 6.02 -2.39 -0.01 2.62 16 35 H 0.06 2.23 6.56 -2.39 -0.02 2.21 16 36 H 0.03 1.13 6.97 -2.39 -0.02 1.11 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.31 6.56 -2.39 -0.02 1.29 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -64.35 361.39 3.24 -61.11 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.86 Total: 15.16 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 3.88 Total: -38.75 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.52 Total: -84.86 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -64.35 3.24 -61.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565330461.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.118 kcal (2) G-P(sol) polarization free energy of solvation -64.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds