Wall clock time and date at job start Mon Mar 30 2020 07:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47131 * 55.00145 * 3 2 1 5 5 C 1.53002 * 109.46806 * 174.99609 * 3 2 1 6 6 C 1.52997 * 109.46978 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47415 * 300.00098 * 6 5 3 8 8 H 1.09002 * 109.47070 * 300.00053 * 7 6 5 9 9 N 1.46899 * 109.47394 * 180.02562 * 7 6 5 10 10 C 1.46894 * 111.00220 * 155.00114 * 9 7 6 11 11 C 1.53001 * 109.47508 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46929 * 300.00053 * 11 10 9 13 13 C 1.52998 * 109.46926 * 59.99706 * 11 10 9 14 14 C 1.52996 * 109.47238 * 179.97438 * 11 10 9 15 15 C 1.50706 * 109.46805 * 180.02562 * 14 11 10 16 16 H 1.07996 * 120.00044 * 359.97438 * 15 14 11 17 17 C 1.37882 * 119.99646 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99457 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00220 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.46963 * 90.00028 * 19 17 15 21 21 H 1.48501 * 109.47327 * 209.99904 * 19 17 15 22 22 H 1.48501 * 109.46934 * 330.00247 * 19 17 15 23 23 C 1.52997 * 109.46817 * 59.99873 * 7 6 5 24 24 C 1.52992 * 109.47482 * 300.00014 * 23 7 6 25 25 H 1.09002 * 109.46824 * 60.00417 * 1 2 3 26 26 H 1.08996 * 109.46751 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 300.00027 * 1 2 3 28 28 H 1.08991 * 109.47210 * 239.99499 * 2 1 3 29 29 H 1.09002 * 109.46824 * 119.99583 * 2 1 3 30 30 H 1.09002 * 109.47097 * 59.99871 * 5 3 2 31 31 H 1.08998 * 109.47844 * 300.00086 * 5 3 2 32 32 H 1.09000 * 109.47140 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47497 * 60.00450 * 6 5 3 34 34 H 1.00900 * 110.99934 * 278.95621 * 9 7 6 35 35 H 1.08998 * 109.47346 * 299.99916 * 10 9 7 36 36 H 1.09007 * 109.47035 * 60.00148 * 10 9 7 37 37 H 1.09001 * 109.47181 * 60.00256 * 12 11 10 38 38 H 1.09004 * 109.47029 * 179.97438 * 12 11 10 39 39 H 1.08993 * 109.47399 * 299.99677 * 12 11 10 40 40 H 1.09002 * 109.47127 * 60.00210 * 13 11 10 41 41 H 1.09001 * 109.47298 * 179.97438 * 13 11 10 42 42 H 1.08997 * 109.47299 * 300.00693 * 13 11 10 43 43 H 1.08998 * 109.47509 * 299.99978 * 14 11 10 44 44 H 1.08999 * 109.47418 * 60.00588 * 14 11 10 45 45 H 0.97002 * 119.99706 * 179.97438 * 18 17 15 46 46 H 1.09002 * 109.47153 * 60.00231 * 23 7 6 47 47 H 1.08998 * 109.47533 * 179.97438 * 23 7 6 48 48 H 1.09002 * 109.47103 * 300.00247 * 24 23 7 49 49 H 1.08996 * 109.47747 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 6 4.0748 2.8868 0.1252 7 6 3.6702 3.5703 -1.1825 8 1 4.1049 3.0309 -2.0241 9 7 4.1604 4.9551 -1.1834 10 6 4.3359 5.4506 -2.5550 11 6 4.8457 6.8926 -2.5152 12 6 3.8314 7.7720 -1.7811 13 6 6.1870 6.9392 -1.7806 14 6 5.0290 7.4085 -3.9438 15 6 5.5318 8.8287 -3.9044 16 1 5.7029 9.3148 -2.9554 17 6 5.7722 9.5077 -5.0802 18 7 6.2104 10.7472 -5.0457 19 14 5.4754 8.6671 -6.7217 20 1 4.0767 8.9111 -7.1570 21 1 6.4121 9.2155 -7.7352 22 1 5.7014 7.2064 -6.5778 23 6 2.1454 3.5684 -1.3083 24 6 1.6353 2.1260 -1.3077 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.9995 0.9053 -0.7160 31 1 3.8533 0.9571 1.0572 32 1 5.1612 2.8881 0.2144 33 1 3.6403 3.4263 0.9668 34 1 3.5446 5.5570 -0.6575 35 1 5.0581 4.8239 -3.0782 36 1 3.3801 5.4179 -3.0782 37 1 3.7012 7.4044 -0.7632 38 1 4.1948 8.7993 -1.7523 39 1 2.8758 7.7389 -2.3043 40 1 6.9096 6.3127 -2.3035 41 1 6.5504 7.9664 -1.7525 42 1 6.0568 6.5715 -0.7628 43 1 5.7518 6.7819 -4.4664 44 1 4.0737 7.3753 -4.4675 45 1 6.3799 11.2248 -5.8728 46 1 1.7107 4.1079 -0.4667 47 1 1.8570 4.0558 -2.2396 48 1 2.0700 1.5866 -2.1492 49 1 0.5490 2.1247 -1.3968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569270291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:51 Heat of formation + Delta-G solvation = -51.506648 kcal Electronic energy + Delta-G solvation = -21324.642328 eV Core-core repulsion = 18477.371342 eV Total energy + Delta-G solvation = -2847.270986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.41757 -37.43276 -34.97521 -32.60225 -31.66192 -30.77924 -28.34669 -27.32996 -26.34079 -25.05187 -23.37923 -22.65234 -21.71975 -20.59182 -20.00165 -17.80249 -16.76992 -15.94110 -15.22252 -14.70918 -14.64034 -14.32480 -13.98760 -13.88245 -13.69747 -13.40712 -13.09265 -12.78622 -12.59990 -12.30943 -12.20220 -12.13056 -11.78323 -11.66806 -11.34839 -11.22380 -11.06328 -10.95906 -10.83803 -10.83488 -10.60329 -10.47341 -10.34959 -10.22547 -10.14877 -9.78095 -9.63908 -9.23069 -8.86733 -8.47632 -8.02768 -5.98015 -3.93869 3.33319 3.41098 3.45022 4.30481 4.50172 4.50333 4.55116 4.71820 4.89691 5.01214 5.16811 5.22106 5.28537 5.35159 5.36907 5.43101 5.44304 5.55203 5.60675 5.68234 5.70547 5.72954 5.78349 5.86655 5.90601 5.96221 6.01202 6.04273 6.09655 6.13058 6.22217 6.31085 6.35329 6.36830 6.46745 6.63229 6.73726 6.83619 7.12041 7.17922 7.23070 7.36627 7.39589 7.50574 7.71803 7.88125 8.62346 9.08212 9.65308 11.15186 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033994 B = 0.003500 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.469054 B = 7997.111209 C = 8353.756198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.068 0.932 5 C -0.113 4.113 6 C -0.105 4.105 7 C 0.087 3.913 8 H 0.072 0.928 9 N -0.682 5.682 10 C 0.068 3.932 11 C -0.049 4.049 12 C -0.130 4.130 13 C -0.117 4.117 14 C -0.004 4.004 15 C -0.506 4.506 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.876 3.124 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.149 4.149 24 C -0.110 4.110 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.339 0.661 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.014 0.986 44 H 0.007 0.993 45 H 0.261 0.739 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 -20.249 10.479 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.106 4.106 4 H 0.087 0.913 5 C -0.151 4.151 6 C -0.143 4.143 7 C -0.023 4.023 8 H 0.090 0.910 9 N -0.312 5.312 10 C -0.060 4.060 11 C -0.049 4.049 12 C -0.187 4.187 13 C -0.174 4.174 14 C -0.042 4.042 15 C -0.544 4.544 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.191 1.191 23 C -0.188 4.188 24 C -0.148 4.148 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.682 -20.267 10.430 24.391 hybrid contribution -1.144 -0.163 -1.389 1.807 sum -9.825 -20.430 9.041 24.406 Atomic orbital electron populations 1.21828 0.96087 1.01318 1.01926 1.21576 0.95760 0.96625 1.01788 1.21208 0.95779 0.95490 0.98141 0.91349 1.21589 0.94871 0.97100 1.01582 1.21480 1.01188 0.94371 0.97263 1.21576 0.91983 0.90684 0.98073 0.90968 1.60651 1.53389 1.02040 1.15128 1.22141 0.98619 0.97086 0.88198 1.20416 0.95436 0.91247 0.97827 1.21776 0.98123 1.01393 0.97441 1.21605 0.95796 1.01611 0.98429 1.19629 0.95910 0.97254 0.91436 1.21149 1.42955 0.95843 0.94433 0.90425 1.25021 0.94962 0.94691 0.98967 1.69913 1.46688 1.10529 1.27474 0.86847 0.78059 0.80459 0.84295 1.20537 1.21564 1.19135 1.22283 0.97682 0.97022 1.01847 1.21560 1.00360 0.95517 0.97358 0.92479 0.93066 0.92865 0.92120 0.92183 0.92130 0.92122 0.91347 0.92233 0.84182 0.91789 0.96015 0.94590 0.91230 0.94232 0.94289 0.92205 0.93652 0.96754 0.97467 0.92920 0.92021 0.92115 0.92142 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.70 16 2 C -0.12 -0.88 5.40 -26.73 -0.14 -1.02 16 3 C -0.09 -0.73 2.19 -90.62 -0.20 -0.93 16 4 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 5 C -0.11 -0.99 5.20 -26.73 -0.14 -1.13 16 6 C -0.10 -1.09 5.53 -26.73 -0.15 -1.23 16 7 C 0.09 1.02 2.47 -67.71 -0.17 0.86 16 8 H 0.07 0.91 7.80 -51.93 -0.40 0.51 16 9 N -0.68 -9.52 5.46 -106.73 -0.58 -10.10 16 10 C 0.07 1.13 4.44 -3.83 -0.02 1.11 16 11 C -0.05 -0.95 0.60 -154.51 -0.09 -1.04 16 12 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 13 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 14 C 0.00 -0.11 3.11 -27.88 -0.09 -0.19 16 15 C -0.51 -14.08 8.20 -34.44 -0.28 -14.36 16 16 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 17 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 18 N -0.91 -27.98 13.96 55.43 0.77 -27.21 16 19 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 23 C -0.15 -1.59 5.17 -26.74 -0.14 -1.73 16 24 C -0.11 -1.00 4.96 -26.73 -0.13 -1.13 16 25 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.34 4.62 6.51 -39.29 -0.26 4.36 16 35 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 36 H 0.02 0.36 7.44 -51.93 -0.39 -0.03 16 37 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 38 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 42 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 43 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 44 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 47 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -28.91 358.64 -9.46 -38.37 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.70 Total: 0.08 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -0.69 Total: -23.84 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.19 Total: -37.31 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.91 -9.46 -38.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569270291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.137 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds