Wall clock time and date at job start Mon Mar 30 2020 07:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47131 * 55.00145 * 3 2 1 5 5 C 1.53002 * 109.46806 * 174.99609 * 3 2 1 6 6 C 1.52997 * 109.46978 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47415 * 300.00098 * 6 5 3 8 8 H 1.09002 * 109.47070 * 300.00053 * 7 6 5 9 9 N 1.46899 * 109.47394 * 180.02562 * 7 6 5 10 10 C 1.46894 * 111.00220 * 155.00114 * 9 7 6 11 11 C 1.53001 * 109.47508 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46929 * 300.00053 * 11 10 9 13 13 C 1.52998 * 109.46926 * 59.99706 * 11 10 9 14 14 C 1.52996 * 109.47238 * 179.97438 * 11 10 9 15 15 C 1.50706 * 109.46805 * 180.02562 * 14 11 10 16 16 H 1.07996 * 120.00044 * 359.97438 * 15 14 11 17 17 C 1.37882 * 119.99646 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99457 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00220 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.46963 * 90.00028 * 19 17 15 21 21 H 1.48501 * 109.47327 * 209.99904 * 19 17 15 22 22 H 1.48501 * 109.46934 * 330.00247 * 19 17 15 23 23 C 1.52997 * 109.46817 * 59.99873 * 7 6 5 24 24 C 1.52992 * 109.47482 * 300.00014 * 23 7 6 25 25 H 1.09002 * 109.46824 * 60.00417 * 1 2 3 26 26 H 1.08996 * 109.46751 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 300.00027 * 1 2 3 28 28 H 1.08991 * 109.47210 * 239.99499 * 2 1 3 29 29 H 1.09002 * 109.46824 * 119.99583 * 2 1 3 30 30 H 1.09002 * 109.47097 * 59.99871 * 5 3 2 31 31 H 1.08998 * 109.47844 * 300.00086 * 5 3 2 32 32 H 1.09000 * 109.47140 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47497 * 60.00450 * 6 5 3 34 34 H 1.00900 * 110.99934 * 278.95621 * 9 7 6 35 35 H 1.08998 * 109.47346 * 299.99916 * 10 9 7 36 36 H 1.09007 * 109.47035 * 60.00148 * 10 9 7 37 37 H 1.09001 * 109.47181 * 60.00256 * 12 11 10 38 38 H 1.09004 * 109.47029 * 179.97438 * 12 11 10 39 39 H 1.08993 * 109.47399 * 299.99677 * 12 11 10 40 40 H 1.09002 * 109.47127 * 60.00210 * 13 11 10 41 41 H 1.09001 * 109.47298 * 179.97438 * 13 11 10 42 42 H 1.08997 * 109.47299 * 300.00693 * 13 11 10 43 43 H 1.08998 * 109.47509 * 299.99978 * 14 11 10 44 44 H 1.08999 * 109.47418 * 60.00588 * 14 11 10 45 45 H 0.97002 * 119.99706 * 179.97438 * 18 17 15 46 46 H 1.09002 * 109.47153 * 60.00231 * 23 7 6 47 47 H 1.08998 * 109.47533 * 179.97438 * 23 7 6 48 48 H 1.09002 * 109.47103 * 300.00247 * 24 23 7 49 49 H 1.08996 * 109.47747 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 6 4.0748 2.8868 0.1252 7 6 3.6702 3.5703 -1.1825 8 1 4.1049 3.0309 -2.0241 9 7 4.1604 4.9551 -1.1834 10 6 4.3359 5.4506 -2.5550 11 6 4.8457 6.8926 -2.5152 12 6 3.8314 7.7720 -1.7811 13 6 6.1870 6.9392 -1.7806 14 6 5.0290 7.4085 -3.9438 15 6 5.5318 8.8287 -3.9044 16 1 5.7029 9.3148 -2.9554 17 6 5.7722 9.5077 -5.0802 18 7 6.2104 10.7472 -5.0457 19 14 5.4754 8.6671 -6.7217 20 1 4.0767 8.9111 -7.1570 21 1 6.4121 9.2155 -7.7352 22 1 5.7014 7.2064 -6.5778 23 6 2.1454 3.5684 -1.3083 24 6 1.6353 2.1260 -1.3077 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.9995 0.9053 -0.7160 31 1 3.8533 0.9571 1.0572 32 1 5.1612 2.8881 0.2144 33 1 3.6403 3.4263 0.9668 34 1 3.5446 5.5570 -0.6575 35 1 5.0581 4.8239 -3.0782 36 1 3.3801 5.4179 -3.0782 37 1 3.7012 7.4044 -0.7632 38 1 4.1948 8.7993 -1.7523 39 1 2.8758 7.7389 -2.3043 40 1 6.9096 6.3127 -2.3035 41 1 6.5504 7.9664 -1.7525 42 1 6.0568 6.5715 -0.7628 43 1 5.7518 6.7819 -4.4664 44 1 4.0737 7.3753 -4.4675 45 1 6.3799 11.2248 -5.8728 46 1 1.7107 4.1079 -0.4667 47 1 1.8570 4.0558 -2.2396 48 1 2.0700 1.5866 -2.1492 49 1 0.5490 2.1247 -1.3968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569270291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:50 Heat of formation + Delta-G solvation = -66.533610 kcal Electronic energy + Delta-G solvation = -21325.293946 eV Core-core repulsion = 18477.371342 eV Total energy + Delta-G solvation = -2847.922604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31529 -38.79913 -36.06031 -34.45651 -32.82974 -31.57231 -29.82726 -28.67985 -27.92116 -26.40688 -24.38132 -23.74501 -23.03297 -21.40148 -20.76322 -19.38846 -18.87065 -16.94653 -16.45932 -15.96562 -15.67390 -15.52792 -15.29627 -14.96999 -14.91064 -14.48089 -14.29327 -14.11939 -13.93865 -13.61801 -13.46086 -13.05404 -12.93725 -12.80518 -12.67798 -12.42402 -12.37596 -12.22023 -12.09002 -11.99544 -11.96368 -11.72372 -11.58341 -11.38548 -11.32106 -11.12133 -10.92302 -10.90461 -10.70461 -10.70253 -9.14816 -8.22200 -6.22342 1.34593 1.36779 1.47931 2.39008 3.12732 3.27606 3.77913 3.82741 3.97876 4.10398 4.17135 4.21140 4.31922 4.34150 4.47500 4.49624 4.59962 4.63679 4.67682 4.71992 4.75557 4.83047 4.85981 4.90875 4.97769 5.04941 5.06896 5.08462 5.16896 5.18759 5.22250 5.26463 5.28476 5.32811 5.36304 5.40850 5.42781 5.44757 5.53177 5.58788 5.62900 5.65623 5.76443 5.82261 6.22933 6.42430 6.60125 6.84954 7.40078 8.94105 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033994 B = 0.003500 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.469054 B = 7997.111209 C = 8353.756198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.084 4.084 4 H 0.068 0.932 5 C -0.109 4.109 6 C -0.100 4.100 7 C 0.088 3.912 8 H 0.064 0.936 9 N -0.683 5.683 10 C 0.082 3.918 11 C -0.049 4.049 12 C -0.123 4.123 13 C -0.108 4.108 14 C -0.003 4.003 15 C -0.503 4.503 16 H 0.045 0.955 17 C 0.000 4.000 18 N -0.955 5.955 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.251 1.251 23 C -0.144 4.144 24 C -0.107 4.107 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.342 0.658 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.036 0.964 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.011 0.989 44 H 0.010 0.990 45 H 0.262 0.738 46 H 0.064 0.936 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.683 -22.933 10.798 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.102 4.102 4 H 0.086 0.914 5 C -0.147 4.147 6 C -0.138 4.138 7 C -0.022 4.022 8 H 0.083 0.917 9 N -0.314 5.314 10 C -0.047 4.047 11 C -0.049 4.049 12 C -0.180 4.180 13 C -0.165 4.165 14 C -0.041 4.041 15 C -0.541 4.541 16 H 0.063 0.937 17 C -0.195 4.195 18 N -0.597 5.597 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.174 1.174 23 C -0.183 4.183 24 C -0.145 4.145 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.162 0.838 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.030 0.970 44 H 0.028 0.972 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.962 -22.975 10.766 27.258 hybrid contribution -0.732 0.698 -1.391 1.720 sum -10.694 -22.277 9.375 26.429 Atomic orbital electron populations 1.21827 0.95764 1.01743 1.01831 1.21551 0.96021 0.95868 1.02079 1.21169 0.95400 0.96089 0.97550 0.91374 1.21560 0.95124 0.95916 1.02126 1.21424 1.00681 0.95326 0.96354 1.21614 0.92719 0.89174 0.98643 0.91733 1.60610 1.54098 1.03198 1.13444 1.21848 0.98430 0.94637 0.89784 1.20355 0.95867 0.93437 0.95246 1.21682 0.97734 0.99337 0.99278 1.21503 0.95714 0.99581 0.99741 1.19596 0.95447 0.94628 0.94409 1.21432 1.41846 0.97723 0.93105 0.93722 1.25926 0.95101 0.95315 1.03175 1.70066 1.48697 1.12375 1.28535 0.85798 0.78258 0.80066 0.79344 1.19546 1.21389 1.17429 1.22211 0.96728 0.98061 1.01340 1.21537 1.00685 0.94453 0.97797 0.92756 0.92443 0.92770 0.92169 0.91575 0.92232 0.91064 0.92206 0.92060 0.83796 0.92132 0.95726 0.91567 0.94535 0.93797 0.94514 0.95352 0.91488 0.97028 0.97152 0.92886 0.91700 0.93267 0.92381 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 71.98 0.70 -1.08 16 2 C -0.12 -1.43 5.40 30.60 0.17 -1.26 16 3 C -0.08 -1.17 2.19 -10.79 -0.02 -1.20 16 4 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 5 C -0.11 -1.63 5.20 30.59 0.16 -1.48 16 6 C -0.10 -1.84 5.53 30.59 0.17 -1.67 16 7 C 0.09 1.89 2.47 44.92 0.11 2.00 16 8 H 0.06 1.50 7.80 -2.39 -0.02 1.48 16 9 N -0.68 -17.57 5.46 -491.58 -2.68 -20.25 16 10 C 0.08 2.57 4.44 86.30 0.38 2.95 16 11 C -0.05 -1.85 0.60 -52.18 -0.03 -1.88 16 12 C -0.12 -4.47 7.89 71.98 0.57 -3.91 16 13 C -0.11 -4.17 8.06 71.98 0.58 -3.59 16 14 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 15 C -0.50 -28.62 8.20 25.60 0.21 -28.41 16 16 H 0.04 2.78 5.92 -2.91 -0.02 2.76 16 17 C 0.00 0.03 5.47 84.66 0.46 0.49 16 18 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 19 Si 0.94 45.24 27.47 68.60 1.88 47.13 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 23 C -0.14 -2.76 5.17 30.59 0.16 -2.60 16 24 C -0.11 -1.70 4.96 30.59 0.15 -1.55 16 25 H 0.05 0.65 6.56 -2.39 -0.02 0.63 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.34 8.44 6.51 -89.69 -0.58 7.86 16 35 H 0.06 1.94 8.05 -2.39 -0.02 1.93 16 36 H 0.02 0.76 7.44 -2.38 -0.02 0.74 16 37 H 0.07 1.98 6.57 -2.39 -0.02 1.96 16 38 H 0.04 1.55 6.62 -2.38 -0.02 1.54 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.03 1.24 6.62 -2.39 -0.02 1.22 16 42 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 43 H 0.01 0.54 7.20 -2.39 -0.02 0.53 16 44 H 0.01 0.47 7.57 -2.39 -0.02 0.46 16 45 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 46 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 47 H 0.05 1.06 7.45 -2.39 -0.02 1.04 16 48 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.07 1.00 6.56 -2.39 -0.02 0.99 16 Total: -1.00 -62.73 358.64 3.59 -59.14 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.23 Total: 17.54 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 3.85 Total: -43.24 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.38 Total: -80.57 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Total: -62.73 3.59 -59.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569270291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.396 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds