Wall clock time and date at job start Mon Mar 30 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47100 * 2 1 4 4 C 1.52998 * 109.47100 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47597 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47906 * 174.82519 * 5 4 3 7 7 H 1.08999 * 109.46038 * 305.27580 * 6 5 4 8 8 C 1.53038 * 109.45733 * 65.23792 * 6 5 4 9 9 C 1.53123 * 109.27841 * 179.19755 * 8 6 5 10 10 C 1.53113 * 109.15722 * 302.34935 * 9 8 6 11 11 C 1.53037 * 109.28354 * 57.65507 * 10 9 8 12 12 N 1.46837 * 109.46552 * 185.28974 * 6 5 4 13 13 C 1.46900 * 110.99922 * 54.14935 * 12 6 5 14 14 C 1.53004 * 109.47283 * 175.69410 * 13 12 6 15 15 C 1.53002 * 109.47065 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46970 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99815 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00009 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00051 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00012 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.47166 * 89.99624 * 20 18 16 22 22 H 1.48490 * 109.47323 * 209.99528 * 20 18 16 23 23 H 1.48499 * 109.47304 * 330.00222 * 20 18 16 24 24 H 1.09002 * 109.47284 * 60.00479 * 1 2 3 25 25 H 1.09003 * 109.47256 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47128 * 299.99956 * 1 2 3 27 27 H 1.09004 * 109.47128 * 240.00044 * 2 1 3 28 28 H 1.09003 * 109.47270 * 120.00308 * 2 1 3 29 29 H 1.08994 * 109.47155 * 59.99983 * 3 2 1 30 30 H 1.09000 * 109.47297 * 299.99511 * 3 2 1 31 31 H 1.09004 * 109.47128 * 60.00044 * 4 3 2 32 32 H 1.09003 * 109.47270 * 300.00308 * 4 3 2 33 33 H 1.09007 * 109.47115 * 54.82749 * 5 4 3 34 34 H 1.09002 * 109.47095 * 294.82953 * 5 4 3 35 35 H 1.08999 * 109.50476 * 299.13908 * 8 6 5 36 36 H 1.08994 * 109.50581 * 59.25668 * 8 6 5 37 37 H 1.09003 * 109.51712 * 62.24968 * 9 8 6 38 38 H 1.08993 * 109.52324 * 182.43690 * 9 8 6 39 39 H 1.09005 * 109.50042 * 177.59665 * 10 9 8 40 40 H 1.09000 * 109.50756 * 297.66603 * 10 9 8 41 41 H 1.08997 * 109.46017 * 180.80432 * 11 10 9 42 42 H 1.08993 * 109.46203 * 60.83105 * 11 10 9 43 43 H 1.08997 * 109.46953 * 295.68982 * 13 12 6 44 44 H 1.08997 * 109.47627 * 55.69309 * 13 12 6 45 45 H 1.08997 * 109.46776 * 299.99681 * 14 13 12 46 46 H 1.08997 * 109.46872 * 59.99437 * 14 13 12 47 47 H 1.08997 * 109.47146 * 299.99556 * 15 14 13 48 48 H 1.08997 * 109.46990 * 60.00374 * 15 14 13 49 49 H 0.96998 * 119.99806 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6045 2.8870 0.1307 7 1 5.8938 2.3200 1.0155 8 6 6.2236 2.2434 -1.1121 9 6 7.7495 2.2658 -0.9860 10 6 8.2177 3.7125 -0.8067 11 6 7.5408 4.3135 0.4273 12 7 6.0828 4.2695 0.2574 13 6 5.4033 4.9627 1.3599 14 6 6.0019 6.3605 1.5296 15 6 5.2937 7.0828 2.6775 16 6 5.8838 8.4593 2.8450 17 1 6.6842 8.7861 2.1977 18 6 5.4018 9.3014 3.8245 19 7 5.9171 10.5026 3.9710 20 14 4.0180 8.7359 4.9445 21 1 4.5910 8.0738 6.1439 22 1 3.2107 9.9091 5.3650 23 1 3.1521 7.7749 4.2150 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9287 0.8908 33 1 3.6427 3.4253 0.8396 34 1 3.7947 3.3707 -0.9331 35 1 5.8806 1.2123 -1.1971 36 1 5.9235 2.8017 -1.9988 37 1 8.0521 1.6751 -0.1213 38 1 8.1956 1.8476 -1.8882 39 1 9.2994 3.7310 -0.6736 40 1 7.9497 4.2938 -1.6889 41 1 7.8612 5.3481 0.5495 42 1 7.8209 3.7398 1.3107 43 1 4.3401 5.0477 1.1353 44 1 5.5357 4.3965 2.2818 45 1 7.0651 6.2756 1.7542 46 1 5.8695 6.9268 0.6077 47 1 4.2306 7.1678 2.4524 48 1 5.4258 6.5166 3.5995 49 1 5.5783 11.0949 4.6604 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595872557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:42 Heat of formation + Delta-G solvation = -63.195614 kcal Electronic energy + Delta-G solvation = -20959.457367 eV Core-core repulsion = 18111.679509 eV Total energy + Delta-G solvation = -2847.777858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.53061 -37.13680 -36.34491 -34.72123 -34.13349 -32.67765 -30.75284 -28.74150 -27.17679 -25.59018 -24.08723 -23.15153 -21.80945 -21.57947 -21.40301 -20.54273 -18.89580 -16.99597 -16.66266 -16.32229 -16.14891 -15.90857 -15.37364 -15.13407 -14.83461 -14.67027 -14.53171 -14.21355 -13.94291 -13.80145 -13.56968 -13.43679 -13.07702 -12.80702 -12.70409 -12.56912 -12.36038 -12.05986 -11.87464 -11.83255 -11.75733 -11.64995 -11.60483 -11.53897 -11.41875 -11.34516 -11.23017 -10.88050 -10.85799 -10.76699 -9.19411 -8.30681 -6.34974 1.34231 1.36500 1.48920 2.35253 2.92671 3.04435 3.74352 3.86325 3.96419 4.04388 4.08626 4.16031 4.21345 4.26299 4.33359 4.44183 4.47486 4.50096 4.59118 4.62981 4.66684 4.76121 4.79915 4.85811 4.90952 4.94873 4.98540 4.99501 5.04418 5.09000 5.10492 5.13160 5.16643 5.20923 5.27508 5.29492 5.35981 5.40837 5.48299 5.49755 5.54216 5.56109 5.59423 5.64942 6.17085 6.29478 6.32269 6.72978 7.29615 8.86443 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.004375 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.933975 B = 6398.406197 C = 8338.880195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.085 3.915 7 H 0.031 0.969 8 C -0.106 4.106 9 C -0.118 4.118 10 C -0.113 4.113 11 C 0.047 3.953 12 N -0.540 5.540 13 C 0.065 3.935 14 C -0.092 4.092 15 C -0.008 4.008 16 C -0.533 4.533 17 H 0.029 0.971 18 C 0.002 3.998 19 N -0.953 5.953 20 Si 0.953 3.047 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.246 1.246 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.078 0.922 44 H 0.025 0.975 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.020 0.980 48 H 0.016 0.984 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 -25.052 -10.302 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.023 4.023 7 H 0.049 0.951 8 C -0.144 4.144 9 C -0.156 4.156 10 C -0.151 4.151 11 C -0.081 4.081 12 N -0.265 5.265 13 C -0.063 4.063 14 C -0.130 4.130 15 C -0.046 4.046 16 C -0.571 4.571 17 H 0.047 0.953 18 C -0.194 4.194 19 N -0.593 5.593 20 Si 0.776 3.224 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.170 1.170 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.096 0.904 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.038 0.962 48 H 0.034 0.966 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.075 -24.662 -10.648 27.338 hybrid contribution -0.027 0.399 1.527 1.579 sum -5.102 -24.263 -9.121 26.418 Atomic orbital electron populations 1.21796 0.95807 1.01892 1.01714 1.21520 0.95968 0.96354 1.02182 1.21610 0.95237 0.97187 1.01730 1.21552 0.95384 0.95396 1.02385 1.21698 0.93593 0.97775 1.02130 1.21732 0.95287 0.87504 0.97768 0.95135 1.21644 0.95097 1.00726 0.96885 1.21585 0.95860 0.95882 1.02241 1.21574 0.99597 0.96634 0.97266 1.22198 0.87685 1.00743 0.97475 1.61997 1.05052 1.15880 1.43595 1.22090 0.99031 0.93689 0.91484 1.21397 0.98996 0.94472 0.98137 1.19478 0.96210 0.93798 0.95140 1.21496 1.19193 0.99710 1.16694 0.95256 1.26058 0.99657 0.94666 0.99043 1.70077 1.44710 1.09342 1.35218 0.85618 0.79319 0.78424 0.79058 1.19107 1.20765 1.16973 0.92722 0.92151 0.93165 0.91472 0.92117 0.92938 0.92081 0.90709 0.92265 0.92827 0.91663 0.89771 0.91671 0.92295 0.90269 0.90706 0.91760 0.91608 0.95680 0.90381 0.95654 0.93291 0.93334 0.96153 0.96603 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.66 5.93 30.59 0.18 -1.48 16 3 C -0.12 -1.92 5.21 30.59 0.16 -1.76 16 4 C -0.11 -1.80 4.84 30.59 0.15 -1.65 16 5 C -0.11 -2.44 4.43 30.59 0.14 -2.30 16 6 C 0.09 1.97 1.90 44.94 0.09 2.05 16 7 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 8 C -0.11 -1.97 5.11 30.65 0.16 -1.81 16 9 C -0.12 -2.12 6.00 30.67 0.18 -1.94 16 10 C -0.11 -2.48 6.09 30.64 0.19 -2.29 16 11 C 0.05 1.31 5.02 86.33 0.43 1.75 16 12 N -0.54 -15.67 4.60 -871.14 -4.01 -19.68 16 13 C 0.06 2.16 4.45 86.30 0.38 2.54 16 14 C -0.09 -3.81 4.64 30.60 0.14 -3.67 16 15 C -0.01 -0.41 4.04 29.85 0.12 -0.28 16 16 C -0.53 -31.92 9.66 25.60 0.25 -31.67 16 17 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 18 C 0.00 0.13 5.47 84.65 0.46 0.60 16 19 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 20 Si 0.95 45.27 27.47 68.60 1.88 47.15 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.06 6.85 -2.38 -0.02 1.04 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.30 6.11 -2.38 -0.01 1.28 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.24 6.73 -2.39 -0.02 1.22 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 2.10 5.84 -2.39 -0.01 2.09 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 43 H 0.08 2.54 6.36 -2.39 -0.02 2.52 16 44 H 0.03 0.84 8.13 -2.39 -0.02 0.82 16 45 H 0.05 2.05 6.19 -2.39 -0.01 2.04 16 46 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 48 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 49 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -65.92 365.21 2.71 -63.21 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.79 Total: 13.50 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 3.74 Total: -43.23 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -3.71 Total: -80.63 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.15 kcal Total: -65.92 2.71 -63.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595872557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.011 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds