Wall clock time and date at job start Mon Mar 30 2020 06:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47633 * 2 1 4 4 C 1.52998 * 109.47386 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.46782 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46761 * 174.89361 * 5 4 3 7 7 H 1.09001 * 109.46297 * 183.08400 * 6 5 4 8 8 C 1.53032 * 109.46598 * 63.10338 * 6 5 4 9 9 C 1.53120 * 109.27978 * 180.80830 * 8 6 5 10 10 C 1.53116 * 109.16158 * 57.64929 * 9 8 6 11 11 C 1.53033 * 109.28442 * 302.34872 * 10 9 8 12 12 N 1.46849 * 109.45951 * 303.04844 * 6 5 4 13 13 C 1.46900 * 111.00128 * 305.85611 * 12 6 5 14 14 C 1.53008 * 109.47256 * 167.05298 * 13 12 6 15 15 C 1.52994 * 109.47292 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47264 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99968 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00054 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00089 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99919 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47231 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47432 * 119.99945 * 20 18 16 23 23 H 1.48500 * 109.47250 * 240.00240 * 20 18 16 24 24 H 1.09003 * 109.47770 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47281 * 300.00269 * 1 2 3 26 26 H 1.09006 * 109.46800 * 60.00231 * 1 2 3 27 27 H 1.09003 * 109.47281 * 239.99731 * 2 1 3 28 28 H 1.09004 * 109.46518 * 120.00225 * 2 1 3 29 29 H 1.09003 * 109.47007 * 59.99564 * 3 2 1 30 30 H 1.09005 * 109.46859 * 300.00300 * 3 2 1 31 31 H 1.09003 * 109.47178 * 59.99945 * 4 3 2 32 32 H 1.08994 * 109.46887 * 300.00165 * 4 3 2 33 33 H 1.08999 * 109.47375 * 54.89628 * 5 4 3 34 34 H 1.08998 * 109.47589 * 294.88514 * 5 4 3 35 35 H 1.09001 * 109.50122 * 300.74658 * 8 6 5 36 36 H 1.08998 * 109.50441 * 60.82306 * 8 6 5 37 37 H 1.09001 * 109.52436 * 177.55794 * 9 8 6 38 38 H 1.09007 * 109.52028 * 297.68237 * 9 8 6 39 39 H 1.09003 * 109.50282 * 62.29336 * 10 9 8 40 40 H 1.09006 * 109.50454 * 182.40160 * 10 9 8 41 41 H 1.08992 * 109.46684 * 179.19461 * 11 10 9 42 42 H 1.09005 * 109.46268 * 299.17507 * 11 10 9 43 43 H 1.09005 * 109.47518 * 287.05331 * 13 12 6 44 44 H 1.09005 * 109.47246 * 47.05632 * 13 12 6 45 45 H 1.09005 * 109.46884 * 300.00421 * 14 13 12 46 46 H 1.09005 * 109.46721 * 60.00012 * 14 13 12 47 47 H 1.09005 * 109.47397 * 299.99981 * 15 14 13 48 48 H 1.08998 * 109.47040 * 59.99440 * 15 14 13 49 49 H 0.97001 * 120.00071 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8848 0.0000 6 6 5.6046 2.8868 0.1290 7 1 5.9632 3.9146 0.1837 8 6 6.2204 2.1960 -1.0898 9 6 7.7449 2.1824 -0.9466 10 6 8.1210 1.4705 0.3557 11 6 7.4501 2.1822 1.5327 12 7 5.9932 2.1677 1.3491 13 6 5.3088 2.7195 2.5260 14 6 5.4773 1.7636 3.7088 15 6 4.7639 2.3380 4.9343 16 6 4.9304 1.3969 6.0994 17 1 5.4895 0.4809 5.9780 18 6 4.3699 1.7057 7.3207 19 7 3.6895 2.8214 7.4686 20 14 4.5768 0.5394 8.7651 21 1 5.3780 -0.6367 8.3408 22 1 5.2750 1.2412 9.8719 23 1 3.2415 0.0862 9.2306 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9338 0.9284 -0.8891 32 1 3.9329 0.9287 0.8908 33 1 3.6436 3.4249 0.8402 34 1 3.7938 3.3710 -0.9326 35 1 5.8517 1.1722 -1.1528 36 1 5.9440 2.7386 -1.9938 37 1 8.1854 1.6530 -1.7915 38 1 8.1177 3.2065 -0.9239 39 1 7.7822 0.4352 0.3155 40 1 9.2032 1.4950 0.4845 41 1 7.7044 1.6692 2.4601 42 1 7.7997 3.2136 1.5806 43 1 5.7414 3.6880 2.7771 44 1 4.2482 2.8414 2.3056 45 1 5.0447 0.7951 3.4577 46 1 6.5379 1.6417 3.9291 47 1 5.1961 3.3067 5.1856 48 1 3.7035 2.4597 4.7136 49 1 3.2955 3.0388 8.3279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595872569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:46 Heat of formation + Delta-G solvation = -49.445459 kcal Electronic energy + Delta-G solvation = -21422.414244 eV Core-core repulsion = 18575.232638 eV Total energy + Delta-G solvation = -2847.181607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.46320 -35.92566 -34.69203 -33.22624 -32.74007 -30.64826 -29.71617 -26.80756 -26.02328 -24.04987 -22.98526 -22.00064 -20.96542 -20.71529 -19.79827 -18.91788 -16.29515 -15.90886 -15.42637 -15.08198 -14.49661 -14.41363 -14.31601 -14.10131 -13.52225 -13.40407 -13.02887 -12.90640 -12.78695 -12.19481 -12.11294 -11.80719 -11.63723 -11.55573 -11.30304 -11.16985 -10.93714 -10.83152 -10.79827 -10.68258 -10.55325 -10.51147 -10.36082 -10.22390 -10.03846 -9.88892 -9.46142 -9.25280 -8.98429 -8.30407 -7.90539 -5.95726 -3.97266 3.33615 3.40992 3.45600 4.17261 4.50551 4.76757 4.85042 4.92554 4.98498 5.06216 5.20565 5.24168 5.39719 5.40271 5.45781 5.47181 5.57672 5.66207 5.71915 5.77185 5.82399 5.83567 5.88685 5.95027 5.97473 6.00225 6.03112 6.04311 6.15056 6.21685 6.22316 6.26373 6.29827 6.35167 6.42515 6.47591 6.57754 6.70481 6.79378 6.92063 7.21044 7.52169 7.54450 7.74351 7.89853 8.05552 8.49411 9.10351 9.66562 11.15807 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.005079 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.078094 B = 5511.302631 C = 7192.402593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.116 4.116 6 C 0.085 3.915 7 H 0.032 0.968 8 C -0.111 4.111 9 C -0.120 4.120 10 C -0.115 4.115 11 C 0.053 3.947 12 N -0.528 5.528 13 C 0.050 3.950 14 C -0.102 4.102 15 C 0.022 3.978 16 C -0.515 4.515 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.026 0.974 43 H 0.024 0.976 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.012 0.988 48 H 0.015 0.985 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -1.427 -19.159 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.024 4.024 7 H 0.050 0.950 8 C -0.149 4.149 9 C -0.158 4.158 10 C -0.153 4.153 11 C -0.075 4.075 12 N -0.253 5.253 13 C -0.077 4.077 14 C -0.140 4.140 15 C -0.016 4.016 16 C -0.554 4.554 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.716 -1.810 -19.090 19.252 hybrid contribution 0.321 0.401 1.018 1.140 sum 2.037 -1.409 -18.072 18.241 Atomic orbital electron populations 1.21782 0.96343 1.01259 1.01606 1.21514 0.95418 0.97289 1.01949 1.21649 0.96287 0.96448 1.01496 1.21540 0.94007 0.96364 1.03068 1.21713 0.94212 0.98016 1.01398 1.21579 0.95125 0.94872 0.90807 0.94975 1.21649 0.94908 1.01733 0.96574 1.21579 0.96281 1.00238 0.97712 1.21576 0.99167 1.00329 0.94254 1.22103 0.87899 0.98545 0.98915 1.62004 1.06220 1.54720 1.02388 1.22390 0.98787 0.96511 0.89963 1.21622 1.00222 0.98074 0.94069 1.19068 0.95420 0.96051 0.91026 1.21294 1.32950 1.06015 0.95113 0.92689 1.25020 0.95364 0.95289 0.98830 1.69975 1.35614 1.23702 1.24366 0.86570 0.77815 0.81167 0.82668 1.19735 1.21093 1.21045 0.93094 0.92632 0.93184 0.92528 0.91691 0.92009 0.92883 0.92607 0.89915 0.91512 0.92330 0.90826 0.92244 0.92304 0.92691 0.91189 0.92090 0.90074 0.95604 0.95764 0.90556 0.92734 0.93683 0.96982 0.96691 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.15 0.37 -1.20 16 2 C -0.12 -1.39 5.93 -26.73 -0.16 -1.55 16 3 C -0.12 -1.42 5.21 -26.73 -0.14 -1.56 16 4 C -0.11 -1.38 4.56 -26.73 -0.12 -1.51 16 5 C -0.12 -1.42 4.41 -26.73 -0.12 -1.54 16 6 C 0.08 1.09 2.13 -67.72 -0.14 0.94 16 7 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 8 C -0.11 -1.21 5.11 -26.65 -0.14 -1.35 16 9 C -0.12 -1.26 6.00 -26.61 -0.16 -1.42 16 10 C -0.12 -1.34 6.09 -26.65 -0.16 -1.50 16 11 C 0.05 0.75 5.30 -3.83 -0.02 0.73 16 12 N -0.53 -7.89 3.55 -226.68 -0.81 -8.69 16 13 C 0.05 0.89 4.41 -3.82 -0.02 0.87 16 14 C -0.10 -2.15 5.14 -26.73 -0.14 -2.29 16 15 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 16 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 17 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 20 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.64 6.76 -51.93 -0.35 0.29 16 32 H 0.08 1.23 7.09 -51.93 -0.37 0.86 16 33 H 0.07 0.90 6.23 -51.93 -0.32 0.58 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.84 6.59 -51.93 -0.34 0.50 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.24 6.34 -51.93 -0.33 0.91 16 42 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 44 H 0.08 1.35 5.50 -51.93 -0.29 1.06 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.04 0.94 6.53 -51.93 -0.34 0.60 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -29.41 367.20 -10.96 -40.37 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -9.91 Total: -3.02 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -1.50 Total: -24.55 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.07 Total: -35.28 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.41 -10.96 -40.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595872569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.071 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds