Wall clock time and date at job start Mon Mar 30 2020 06:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47633 * 2 1 4 4 C 1.52998 * 109.47386 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.46782 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46761 * 174.89361 * 5 4 3 7 7 H 1.09001 * 109.46297 * 183.08400 * 6 5 4 8 8 C 1.53032 * 109.46598 * 63.10338 * 6 5 4 9 9 C 1.53120 * 109.27978 * 180.80830 * 8 6 5 10 10 C 1.53116 * 109.16158 * 57.64929 * 9 8 6 11 11 C 1.53033 * 109.28442 * 302.34872 * 10 9 8 12 12 N 1.46849 * 109.45951 * 303.04844 * 6 5 4 13 13 C 1.46900 * 111.00128 * 305.85611 * 12 6 5 14 14 C 1.53008 * 109.47256 * 167.05298 * 13 12 6 15 15 C 1.52994 * 109.47292 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47264 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99968 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00054 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00089 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99919 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47231 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47432 * 119.99945 * 20 18 16 23 23 H 1.48500 * 109.47250 * 240.00240 * 20 18 16 24 24 H 1.09003 * 109.47770 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47281 * 300.00269 * 1 2 3 26 26 H 1.09006 * 109.46800 * 60.00231 * 1 2 3 27 27 H 1.09003 * 109.47281 * 239.99731 * 2 1 3 28 28 H 1.09004 * 109.46518 * 120.00225 * 2 1 3 29 29 H 1.09003 * 109.47007 * 59.99564 * 3 2 1 30 30 H 1.09005 * 109.46859 * 300.00300 * 3 2 1 31 31 H 1.09003 * 109.47178 * 59.99945 * 4 3 2 32 32 H 1.08994 * 109.46887 * 300.00165 * 4 3 2 33 33 H 1.08999 * 109.47375 * 54.89628 * 5 4 3 34 34 H 1.08998 * 109.47589 * 294.88514 * 5 4 3 35 35 H 1.09001 * 109.50122 * 300.74658 * 8 6 5 36 36 H 1.08998 * 109.50441 * 60.82306 * 8 6 5 37 37 H 1.09001 * 109.52436 * 177.55794 * 9 8 6 38 38 H 1.09007 * 109.52028 * 297.68237 * 9 8 6 39 39 H 1.09003 * 109.50282 * 62.29336 * 10 9 8 40 40 H 1.09006 * 109.50454 * 182.40160 * 10 9 8 41 41 H 1.08992 * 109.46684 * 179.19461 * 11 10 9 42 42 H 1.09005 * 109.46268 * 299.17507 * 11 10 9 43 43 H 1.09005 * 109.47518 * 287.05331 * 13 12 6 44 44 H 1.09005 * 109.47246 * 47.05632 * 13 12 6 45 45 H 1.09005 * 109.46884 * 300.00421 * 14 13 12 46 46 H 1.09005 * 109.46721 * 60.00012 * 14 13 12 47 47 H 1.09005 * 109.47397 * 299.99981 * 15 14 13 48 48 H 1.08998 * 109.47040 * 59.99440 * 15 14 13 49 49 H 0.97001 * 120.00071 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8848 0.0000 6 6 5.6046 2.8868 0.1290 7 1 5.9632 3.9146 0.1837 8 6 6.2204 2.1960 -1.0898 9 6 7.7449 2.1824 -0.9466 10 6 8.1210 1.4705 0.3557 11 6 7.4501 2.1822 1.5327 12 7 5.9932 2.1677 1.3491 13 6 5.3088 2.7195 2.5260 14 6 5.4773 1.7636 3.7088 15 6 4.7639 2.3380 4.9343 16 6 4.9304 1.3969 6.0994 17 1 5.4895 0.4809 5.9780 18 6 4.3699 1.7057 7.3207 19 7 3.6895 2.8214 7.4686 20 14 4.5768 0.5394 8.7651 21 1 5.3780 -0.6367 8.3408 22 1 5.2750 1.2412 9.8719 23 1 3.2415 0.0862 9.2306 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9338 0.9284 -0.8891 32 1 3.9329 0.9287 0.8908 33 1 3.6436 3.4249 0.8402 34 1 3.7938 3.3710 -0.9326 35 1 5.8517 1.1722 -1.1528 36 1 5.9440 2.7386 -1.9938 37 1 8.1854 1.6530 -1.7915 38 1 8.1177 3.2065 -0.9239 39 1 7.7822 0.4352 0.3155 40 1 9.2032 1.4950 0.4845 41 1 7.7044 1.6692 2.4601 42 1 7.7997 3.2136 1.5806 43 1 5.7414 3.6880 2.7771 44 1 4.2482 2.8414 2.3056 45 1 5.0447 0.7951 3.4577 46 1 6.5379 1.6417 3.9291 47 1 5.1961 3.3067 5.1856 48 1 3.7035 2.4597 4.7136 49 1 3.2955 3.0388 8.3279 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595872569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:45 Heat of formation + Delta-G solvation = -63.248737 kcal Electronic energy + Delta-G solvation = -21423.012799 eV Core-core repulsion = 18575.232638 eV Total energy + Delta-G solvation = -2847.780162 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.57715 -36.90900 -36.33666 -34.71785 -34.05428 -32.37560 -30.67138 -28.47315 -27.16141 -25.55174 -24.05134 -23.52320 -21.94172 -21.71878 -21.49057 -19.96880 -18.47605 -17.03511 -16.72845 -16.36816 -16.15511 -15.70587 -15.37023 -15.22001 -14.78193 -14.47684 -14.35728 -14.05604 -13.94112 -13.70738 -13.48865 -13.21327 -12.96897 -12.75078 -12.66790 -12.53455 -12.44513 -12.27321 -12.11102 -11.85427 -11.71855 -11.61763 -11.53417 -11.41562 -11.32973 -11.27894 -11.04945 -10.90993 -10.78709 -10.55645 -9.14897 -8.20591 -6.31522 1.38854 1.39244 1.52923 2.40305 2.98018 3.12460 3.78678 3.90398 3.96195 4.02909 4.13534 4.17782 4.29673 4.31705 4.41013 4.46163 4.51054 4.56264 4.61149 4.70968 4.76021 4.81625 4.84651 4.88735 4.91376 5.00213 5.03182 5.05417 5.08923 5.11623 5.15317 5.21380 5.22367 5.26812 5.31621 5.32806 5.38932 5.45103 5.51445 5.54572 5.60738 5.70672 5.74775 5.85900 6.18107 6.29606 6.35582 6.85212 7.37687 8.91652 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.005079 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.078094 B = 5511.302631 C = 7192.402593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.105 4.105 5 C -0.114 4.114 6 C 0.082 3.918 7 H 0.027 0.973 8 C -0.106 4.106 9 C -0.118 4.118 10 C -0.110 4.110 11 C 0.049 3.951 12 N -0.529 5.529 13 C 0.065 3.935 14 C -0.085 4.085 15 C 0.028 3.972 16 C -0.540 4.540 17 H 0.057 0.943 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.023 0.977 43 H 0.013 0.987 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.045 0.955 47 H -0.013 1.013 48 H -0.010 1.010 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -2.418 -20.869 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.026 4.026 7 H 0.045 0.955 8 C -0.143 4.143 9 C -0.155 4.155 10 C -0.148 4.148 11 C -0.079 4.079 12 N -0.254 5.254 13 C -0.063 4.063 14 C -0.123 4.123 15 C -0.010 4.010 16 C -0.578 4.578 17 H 0.076 0.924 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.789 3.211 21 H -0.186 1.186 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.032 0.968 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.005 0.995 48 H 0.009 0.991 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.371 -2.805 -20.818 21.139 hybrid contribution 0.112 0.748 1.538 1.713 sum 2.483 -2.057 -19.280 19.548 Atomic orbital electron populations 1.21776 0.95571 1.01845 1.01707 1.21510 0.96143 0.96833 1.01683 1.21621 0.95860 0.96795 1.01330 1.21441 0.94363 0.96159 1.02258 1.21705 0.93772 0.97918 1.01727 1.21708 0.95664 0.94671 0.90531 0.95455 1.21637 0.95162 1.01549 0.96001 1.21580 0.95922 1.00490 0.97540 1.21547 0.99754 0.99752 0.93710 1.22170 0.87477 0.98573 0.99646 1.61978 1.06642 1.54778 1.01979 1.22073 0.99090 0.94976 0.90171 1.21347 0.99286 0.98206 0.93415 1.18949 0.94237 0.94850 0.92932 1.21693 1.33297 1.06524 0.96298 0.92435 1.25976 0.94731 0.97052 1.02016 1.70104 1.36337 1.25564 1.25423 0.85406 0.78151 0.78967 0.78590 1.18646 1.20247 1.20237 0.92301 0.93731 0.91876 0.91168 0.93546 0.93981 0.91158 0.91129 0.92853 0.93475 0.90028 0.91020 0.90141 0.90215 0.92453 0.91601 0.90577 0.91845 0.95891 0.96835 0.90816 0.93170 0.93614 0.99503 0.99133 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.12 -2.70 5.93 30.59 0.18 -2.52 16 3 C -0.12 -2.70 5.21 30.59 0.16 -2.54 16 4 C -0.10 -2.50 4.56 30.59 0.14 -2.36 16 5 C -0.11 -2.68 4.41 30.59 0.13 -2.54 16 6 C 0.08 2.02 2.13 44.94 0.10 2.11 16 7 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 8 C -0.11 -2.02 5.11 30.65 0.16 -1.86 16 9 C -0.12 -2.11 6.00 30.67 0.18 -1.93 16 10 C -0.11 -2.34 6.09 30.64 0.19 -2.16 16 11 C 0.05 1.37 5.30 86.32 0.46 1.83 16 12 N -0.53 -15.80 3.55 -871.07 -3.09 -18.89 16 13 C 0.06 2.38 4.41 86.31 0.38 2.76 16 14 C -0.08 -3.72 5.14 30.60 0.16 -3.56 16 15 C 0.03 1.54 4.97 29.84 0.15 1.69 16 16 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 18 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 19 N -0.93 -58.16 13.29 21.45 0.28 -57.87 16 20 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 26 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.48 6.76 -2.39 -0.02 1.46 16 32 H 0.05 1.60 7.09 -2.39 -0.02 1.58 16 33 H 0.05 1.29 6.23 -2.39 -0.01 1.28 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.43 6.59 -2.39 -0.02 1.41 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.06 1.97 6.34 -2.39 -0.02 1.95 16 42 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.01 0.52 8.09 -2.38 -0.02 0.50 16 44 H 0.07 2.74 5.50 -2.38 -0.01 2.73 16 45 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 46 H 0.05 1.98 6.53 -2.38 -0.02 1.97 16 47 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 48 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 49 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -64.27 367.20 3.86 -60.41 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.85 Total: 13.55 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 3.79 Total: -44.55 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -2.81 Total: -76.77 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -64.27 3.86 -60.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595872569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.834 kcal (2) G-P(sol) polarization free energy of solvation -64.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds